Wall clock time and date at job start Tue Mar 31 2020 04:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47084 * 2 1 4 4 C 1.34784 * 119.99864 * 180.02562 * 3 2 1 5 5 O 1.21588 * 119.99858 * 359.72927 * 4 3 2 6 6 N 1.34777 * 119.99964 * 179.73002 * 4 3 2 7 7 C 1.47416 * 125.64897 * 359.68525 * 6 4 3 8 8 C 1.55137 * 104.72276 * 155.82015 * 7 6 4 9 9 C 1.55156 * 101.47987 * 37.29940 * 8 7 6 10 10 H 1.08998 * 110.72469 * 82.69764 * 9 8 7 11 11 N 1.46897 * 110.71780 * 205.96979 * 9 8 7 12 12 C 1.46905 * 111.00057 * 199.97685 * 11 9 8 13 13 C 1.53006 * 109.47055 * 179.97438 * 12 11 9 14 14 H 1.09005 * 109.46821 * 304.99866 * 13 12 11 15 15 O 1.42894 * 109.46971 * 64.99951 * 13 12 11 16 16 C 1.52995 * 109.46915 * 185.00230 * 13 12 11 17 17 N 1.46899 * 109.47046 * 179.97438 * 16 13 12 18 18 C 1.46899 * 111.00088 * 293.95112 * 17 16 13 19 19 C 1.46903 * 110.99972 * 169.99742 * 17 16 13 20 20 C 1.50704 * 109.47189 * 190.00086 * 19 17 16 21 21 H 1.08000 * 119.99470 * 359.97438 * 20 19 17 22 22 C 1.37876 * 120.00032 * 180.02562 * 20 19 17 23 23 N 1.31512 * 120.00159 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99867 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46926 * 60.00004 * 24 22 20 26 26 H 1.48497 * 109.47234 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47105 * 300.00213 * 24 22 20 28 28 C 1.47016 * 125.64640 * 180.02562 * 6 4 3 29 29 H 1.08993 * 109.47372 * 59.99485 * 1 2 3 30 30 H 1.09003 * 109.47139 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46593 * 299.99743 * 1 2 3 32 32 H 1.09007 * 109.46593 * 240.00257 * 2 1 3 33 33 H 1.09006 * 109.47216 * 120.00716 * 2 1 3 34 34 H 0.97000 * 120.00740 * 359.72857 * 3 2 1 35 35 H 1.08995 * 110.37138 * 274.75477 * 7 6 4 36 36 H 1.09006 * 110.36727 * 37.07716 * 7 6 4 37 37 H 1.08991 * 111.19029 * 279.19681 * 8 7 6 38 38 H 1.08998 * 110.93692 * 155.29041 * 8 7 6 39 39 H 1.00907 * 111.00121 * 323.93018 * 11 9 8 40 40 H 1.08994 * 109.47252 * 299.99727 * 12 11 9 41 41 H 1.08997 * 109.46805 * 59.99972 * 12 11 9 42 42 H 0.96696 * 114.00159 * 60.00295 * 15 13 12 43 43 H 1.09005 * 109.47079 * 299.99478 * 16 13 12 44 44 H 1.09003 * 109.47488 * 59.99927 * 16 13 12 45 45 H 1.09003 * 109.47136 * 59.99754 * 18 17 16 46 46 H 1.08995 * 109.47234 * 180.02562 * 18 17 16 47 47 H 1.08998 * 109.47097 * 300.00125 * 18 17 16 48 48 H 1.08995 * 109.47297 * 309.99681 * 19 17 16 49 49 H 1.09001 * 109.47253 * 70.00020 * 19 17 16 50 50 H 0.96996 * 120.00024 * 180.02562 * 23 22 20 51 51 H 1.09008 * 109.88126 * 300.43124 * 28 6 4 52 52 H 1.08997 * 109.88761 * 61.44248 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3435 1.6274 -0.0005 5 8 4.1335 0.7032 0.0040 6 7 3.7927 2.8981 -0.0060 7 6 2.9498 4.1074 -0.0184 8 6 3.8437 5.2175 0.5942 9 6 5.2343 4.8505 0.0120 10 1 5.3467 5.2467 -0.9972 11 7 6.3091 5.3387 0.8863 12 6 7.5807 5.4305 0.1564 13 6 8.6732 5.9420 1.0976 14 1 8.3576 6.8863 1.5413 15 8 8.8991 4.9818 2.1315 16 6 9.9666 6.1561 0.3089 17 7 11.0153 6.6478 1.2124 18 6 10.6887 7.9876 1.7184 19 6 12.3267 6.6403 0.5503 20 6 13.4047 6.9120 1.5677 21 1 13.1419 7.0744 2.6026 22 6 14.7263 6.9543 1.1772 23 7 15.0462 6.7580 -0.0833 24 14 16.0625 7.2917 2.4382 25 1 16.0314 6.2397 3.4859 26 1 17.3880 7.2853 1.7687 27 1 15.8302 8.6189 3.0624 28 6 5.2047 3.3076 -0.0078 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5140 0.8900 34 1 1.3881 2.1185 -0.0040 35 1 2.6690 4.3638 -1.0399 36 1 2.0605 3.9563 0.5937 37 1 3.8492 5.1629 1.6828 38 1 3.5265 6.2039 0.2560 39 1 6.0643 6.2263 1.2991 40 1 7.8561 4.4449 -0.2189 41 1 7.4703 6.1201 -0.6804 42 1 9.1832 4.1157 1.8087 43 1 10.2822 5.2118 -0.1348 44 1 9.7942 6.8886 -0.4797 45 1 9.7462 7.9499 2.2647 46 1 11.4817 8.3278 2.3843 47 1 10.5960 8.6795 0.8813 48 1 12.4968 5.6661 0.0921 49 1 12.3498 7.4125 -0.2186 50 1 15.9760 6.7874 -0.3579 51 1 5.7054 2.9161 0.8778 52 1 5.6973 2.9364 -0.9064 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569715724.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:47 Heat of formation + Delta-G solvation = -66.068143 kcal Electronic energy + Delta-G solvation = -28037.794032 eV Core-core repulsion = 24072.485735 eV Total energy + Delta-G solvation = -3965.308297 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.226 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.58731 -38.70692 -37.79519 -35.70398 -35.53842 -34.58765 -32.49260 -31.65835 -30.42788 -29.65193 -28.11789 -27.01805 -25.75332 -24.23180 -23.25742 -22.88606 -21.41603 -20.96067 -20.27458 -20.05040 -18.49754 -17.20619 -16.52401 -16.36437 -16.13403 -15.83957 -15.51192 -15.07005 -14.86644 -14.59868 -14.55413 -14.30838 -14.20612 -13.91014 -13.51268 -13.36973 -13.29204 -12.90010 -12.70265 -12.64511 -12.28087 -12.18384 -11.91639 -11.89735 -11.85656 -11.58310 -11.32546 -11.19514 -11.08546 -10.86583 -10.73023 -10.64070 -10.44132 -10.27315 -9.94991 -9.54460 -9.49551 -9.09092 -8.82679 -8.66149 -8.40970 -7.17569 -6.00295 -4.01311 2.24323 2.93633 3.36342 3.39867 3.43624 3.56517 3.78471 4.04459 4.20909 4.44706 4.53803 4.63049 4.65591 4.75808 4.82683 4.85848 4.88650 5.01735 5.02603 5.17639 5.28107 5.34989 5.35543 5.37882 5.46995 5.51309 5.52388 5.57887 5.59967 5.65870 5.68932 5.78161 5.93385 6.06961 6.12773 6.20925 6.30567 6.41586 6.66741 6.77423 6.78048 7.11160 7.29366 7.34383 7.62842 7.82589 8.07509 8.17690 8.23632 8.30558 8.57868 9.06449 9.62841 11.10633 Molecular weight = 328.23amu Principal moments of inertia in cm(-1) A = 0.028545 B = 0.001712 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.679190 B =16348.903428 C =16842.766544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.132 3.868 3 N -0.747 5.747 4 C 0.720 3.280 5 O -0.585 6.585 6 N -0.635 5.635 7 C 0.102 3.898 8 C -0.133 4.133 9 C 0.074 3.926 10 H 0.060 0.940 11 N -0.667 5.667 12 C 0.025 3.975 13 C 0.118 3.882 14 H 0.091 0.909 15 O -0.536 6.536 16 C 0.024 3.976 17 N -0.528 5.528 18 C 0.037 3.963 19 C 0.193 3.807 20 C -0.506 4.506 21 H 0.064 0.936 22 C 0.054 3.946 23 N -0.901 5.901 24 Si 0.899 3.101 25 H -0.276 1.276 26 H -0.288 1.288 27 H -0.278 1.278 28 C 0.135 3.865 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.394 0.606 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.346 0.654 40 H 0.077 0.923 41 H 0.038 0.962 42 H 0.370 0.630 43 H 0.070 0.930 44 H 0.026 0.974 45 H 0.046 0.954 46 H 0.074 0.926 47 H 0.007 0.993 48 H 0.028 0.972 49 H -0.012 1.012 50 H 0.261 0.739 51 H 0.083 0.917 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.627 -5.206 -2.619 33.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.008 3.992 3 N -0.404 5.404 4 C 0.422 3.578 5 O -0.463 6.463 6 N -0.374 5.374 7 C -0.022 4.022 8 C -0.171 4.171 9 C -0.037 4.037 10 H 0.078 0.922 11 N -0.299 5.299 12 C -0.105 4.105 13 C 0.057 3.943 14 H 0.109 0.891 15 O -0.339 6.339 16 C -0.106 4.106 17 N -0.252 5.252 18 C -0.111 4.111 19 C 0.068 3.932 20 C -0.545 4.545 21 H 0.082 0.918 22 C -0.147 4.147 23 N -0.540 5.540 24 Si 0.727 3.273 25 H -0.201 1.201 26 H -0.214 1.214 27 H -0.203 1.203 28 C 0.011 3.989 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.228 0.772 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.166 0.834 40 H 0.096 0.904 41 H 0.056 0.944 42 H 0.216 0.784 43 H 0.089 0.911 44 H 0.044 0.956 45 H 0.065 0.935 46 H 0.093 0.907 47 H 0.025 0.975 48 H 0.047 0.953 49 H 0.006 0.994 50 H 0.071 0.929 51 H 0.102 0.898 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -31.901 -6.452 -1.694 32.591 hybrid contribution 0.442 1.516 -1.266 2.024 sum -31.459 -4.936 -2.960 31.981 Atomic orbital electron populations 1.22010 0.94435 1.03325 1.02438 1.21162 0.93780 0.81743 1.02500 1.45186 1.05227 1.09095 1.80940 1.15412 0.82599 0.81776 0.78012 1.90957 1.54985 1.42397 1.57925 1.47492 1.08073 1.03585 1.78268 1.22272 0.94361 0.84913 1.00607 1.22982 0.93842 0.98135 1.02166 1.22523 0.91031 0.94540 0.95579 0.92185 1.60284 1.01499 1.34674 1.33449 1.22835 0.90359 1.01586 0.95725 1.21837 0.91537 0.92684 0.88193 0.89105 1.86580 1.89914 1.24021 1.33400 1.22729 0.93172 1.00416 0.94292 1.62009 1.02703 1.23529 1.36969 1.22241 1.00515 0.89585 0.98793 1.19743 0.83715 0.96340 0.93442 1.21138 0.90522 1.47720 0.95090 0.91828 1.24991 0.98750 0.95552 0.95366 1.69948 1.18197 1.50393 1.15501 0.86542 0.80581 0.78847 0.81328 1.20100 1.21410 1.20316 1.21805 0.80624 0.93584 1.02898 0.92042 0.90588 0.91997 0.91616 0.91524 0.77160 0.91392 0.90908 0.89197 0.89770 0.83427 0.90408 0.94407 0.78381 0.91128 0.95604 0.93496 0.90712 0.97489 0.95349 0.99373 0.92922 0.89846 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.57 10.03 37.16 0.37 -0.20 16 2 C 0.13 0.89 6.39 -4.04 -0.03 0.87 16 3 N -0.75 -5.74 5.52 -65.22 -0.36 -6.10 16 4 C 0.72 8.38 8.49 -86.91 -0.74 7.64 16 5 O -0.59 -9.52 16.67 5.29 0.09 -9.43 16 6 N -0.64 -6.03 3.32 -176.10 -0.59 -6.61 16 7 C 0.10 0.56 6.59 -2.41 -0.02 0.55 16 8 C -0.13 -0.74 6.53 -24.46 -0.16 -0.90 16 9 C 0.07 0.58 3.23 -65.88 -0.21 0.37 16 10 H 0.06 0.45 7.90 -51.93 -0.41 0.04 16 11 N -0.67 -6.29 6.24 -104.79 -0.65 -6.94 16 12 C 0.02 0.27 5.18 -3.82 -0.02 0.25 16 13 C 0.12 1.63 3.02 -26.73 -0.08 1.55 16 14 H 0.09 1.27 6.55 -51.93 -0.34 0.93 16 15 O -0.54 -8.49 13.15 -35.23 -0.46 -8.96 16 16 C 0.02 0.41 4.62 -3.83 -0.02 0.39 16 17 N -0.53 -11.45 4.62 -244.37 -1.13 -12.57 16 18 C 0.04 0.74 9.14 60.06 0.55 1.28 16 19 C 0.19 5.08 4.72 -4.97 -0.02 5.05 16 20 C -0.51 -14.46 8.46 -34.44 -0.29 -14.75 16 21 H 0.06 1.81 7.12 -52.49 -0.37 1.43 16 22 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 23 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 24 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.13 1.39 6.55 -3.07 -0.02 1.37 16 29 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.39 1.90 6.95 -40.82 -0.28 1.62 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.27 7.29 -51.93 -0.38 -0.10 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.35 2.94 8.50 -39.29 -0.33 2.61 16 40 H 0.08 0.85 8.13 -51.93 -0.42 0.43 16 41 H 0.04 0.38 8.09 -51.93 -0.42 -0.04 16 42 H 0.37 5.07 9.04 45.56 0.41 5.48 16 43 H 0.07 1.21 7.93 -51.93 -0.41 0.80 16 44 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 45 H 0.05 0.80 6.47 -51.93 -0.34 0.47 16 46 H 0.07 1.60 6.76 -51.93 -0.35 1.25 16 47 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 48 H 0.03 0.80 7.93 -51.93 -0.41 0.38 16 49 H -0.01 -0.32 8.12 -51.93 -0.42 -0.75 16 50 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 51 H 0.08 1.06 8.03 -51.92 -0.42 0.64 16 52 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 414.74 15.07 6.25 6.25 Total: -1.00 -35.55 414.74 -10.60 -46.15 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -8.68 Total: 2.62 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -0.78 Total: 4.94 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -1.99 Total: -58.52 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.38 Total: -18.38 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -35.55 -10.60 -46.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569715724.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.914 kcal (2) G-P(sol) polarization free energy of solvation -35.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds