Wall clock time and date at job start Tue Mar 31 2020 04:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47519 * 2 1 4 4 C 1.34782 * 120.00097 * 180.02562 * 3 2 1 5 5 O 1.21587 * 119.99585 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99864 * 180.02562 * 4 3 2 7 7 C 1.47423 * 125.64935 * 0.02562 * 6 4 3 8 8 C 1.54909 * 104.83351 * 155.83866 * 7 6 4 9 9 C 1.55158 * 101.61642 * 36.99324 * 8 7 6 10 10 H 1.08999 * 110.72042 * 82.87870 * 9 8 7 11 11 N 1.46899 * 110.72159 * 206.15780 * 9 8 7 12 12 C 1.46907 * 110.99756 * 204.99946 * 11 9 8 13 13 C 1.52994 * 109.46806 * 179.97438 * 12 11 9 14 14 H 1.09000 * 109.47392 * 59.99698 * 13 12 11 15 15 O 1.42902 * 109.47390 * 299.99485 * 13 12 11 16 16 C 1.53003 * 109.46716 * 180.02562 * 13 12 11 17 17 N 1.46905 * 109.46904 * 185.00080 * 16 13 12 18 18 C 1.46901 * 111.00175 * 66.04274 * 17 16 13 19 19 C 1.46901 * 110.99833 * 189.99942 * 17 16 13 20 20 C 1.50699 * 109.46856 * 170.00100 * 19 17 16 21 21 H 1.08006 * 120.00464 * 359.97438 * 20 19 17 22 22 C 1.37878 * 120.00076 * 179.97438 * 20 19 17 23 23 N 1.31515 * 119.99916 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00387 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47030 * 59.99834 * 24 22 20 26 26 H 1.48495 * 109.47514 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47476 * 300.00141 * 24 22 20 28 28 C 1.47016 * 125.64624 * 179.97438 * 6 4 3 29 29 H 1.09001 * 109.47248 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46475 * 300.00202 * 1 2 3 31 31 H 1.08999 * 109.46738 * 59.99815 * 1 2 3 32 32 H 1.09006 * 109.46975 * 239.99942 * 2 1 3 33 33 H 1.09001 * 109.47236 * 120.00037 * 2 1 3 34 34 H 0.96998 * 120.00087 * 359.97438 * 3 2 1 35 35 H 1.09000 * 110.36544 * 37.00287 * 7 6 4 36 36 H 1.09002 * 110.37016 * 274.68213 * 7 6 4 37 37 H 1.09002 * 111.00594 * 155.08642 * 8 7 6 38 38 H 1.09002 * 111.00655 * 278.89906 * 8 7 6 39 39 H 1.00897 * 111.00083 * 81.04139 * 11 9 8 40 40 H 1.09002 * 109.46639 * 299.99672 * 12 11 9 41 41 H 1.08999 * 109.46929 * 59.99215 * 12 11 9 42 42 H 0.96700 * 114.00134 * 300.00901 * 15 13 12 43 43 H 1.08997 * 109.47135 * 304.99349 * 16 13 12 44 44 H 1.08995 * 109.47464 * 65.00110 * 16 13 12 45 45 H 1.09001 * 109.46911 * 60.00293 * 18 17 16 46 46 H 1.09000 * 109.47140 * 179.97438 * 18 17 16 47 47 H 1.09003 * 109.47322 * 300.00267 * 18 17 16 48 48 H 1.09005 * 109.47065 * 289.99422 * 19 17 16 49 49 H 1.08990 * 109.47417 * 50.00098 * 19 17 16 50 50 H 0.97003 * 120.00405 * 180.02562 * 23 22 20 51 51 H 1.09000 * 109.88531 * 300.50046 * 28 6 4 52 52 H 1.08996 * 109.88671 * 61.51859 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3436 1.6274 -0.0005 5 8 4.1335 0.7031 -0.0005 6 7 3.7928 2.8980 0.0000 7 6 2.9498 4.1075 0.0017 8 6 3.8445 5.2136 0.6146 9 6 5.2349 4.8508 0.0295 10 1 5.3467 5.2535 -0.9772 11 7 6.3100 5.3336 0.9064 12 6 7.5518 5.5439 0.1502 13 6 8.6453 6.0461 1.0950 14 1 8.8171 5.3070 1.8775 15 8 8.2337 7.2798 1.6871 16 6 9.9385 6.2656 0.3072 17 7 11.0191 6.6323 1.2323 18 6 11.3430 5.5172 2.1321 19 6 12.2106 7.0802 0.4990 20 6 13.2012 7.6757 1.4660 21 1 12.9688 7.7177 2.5199 22 6 14.4043 8.1670 1.0053 23 7 14.6876 8.1154 -0.2779 24 14 15.6320 8.9058 2.2038 25 1 16.0226 7.8821 3.2062 26 1 16.8364 9.3585 1.4625 27 1 15.0126 10.0647 2.8955 28 6 5.2048 3.3075 0.0001 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.3882 2.1185 -0.0004 35 1 2.0640 3.9515 0.6174 36 1 2.6635 4.3718 -1.0163 37 1 3.5266 6.2019 0.2824 38 1 3.8506 5.1529 1.7029 39 1 6.4591 4.7006 1.6779 40 1 7.8655 4.6029 -0.3018 41 1 7.3800 6.2833 -0.6320 42 1 8.0626 7.9850 1.0481 43 1 10.2049 5.3479 -0.2170 44 1 9.7916 7.0677 -0.4161 45 1 11.6632 4.6571 1.5440 46 1 12.1462 5.8155 2.8059 47 1 10.4602 5.2513 2.7136 48 1 12.6653 6.2299 -0.0094 49 1 11.9235 7.8320 -0.2361 50 1 15.5342 8.4607 -0.6021 51 1 5.7059 2.9108 0.8830 52 1 5.6970 2.9418 -0.9010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569715725.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:49 Heat of formation + Delta-G solvation = -66.797807 kcal Electronic energy + Delta-G solvation = -27997.198939 eV Core-core repulsion = 24031.859002 eV Total energy + Delta-G solvation = -3965.339937 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.67389 -38.76877 -37.82631 -35.72156 -35.59859 -34.59768 -32.50254 -31.68298 -30.43692 -29.74641 -28.08720 -26.99713 -25.68809 -24.21706 -23.26398 -22.95429 -21.56873 -20.97132 -20.43279 -20.12028 -18.53587 -17.12086 -16.50650 -16.41873 -16.22908 -15.72420 -15.61172 -15.19959 -14.93354 -14.63883 -14.54081 -14.31352 -14.23602 -13.70430 -13.50869 -13.40267 -13.16394 -12.86295 -12.79462 -12.72581 -12.35769 -12.26594 -11.96407 -11.91174 -11.89051 -11.74752 -11.30620 -11.22070 -11.07848 -10.87423 -10.75302 -10.65476 -10.51998 -10.26746 -9.96653 -9.56536 -9.55905 -9.09897 -8.95622 -8.60961 -8.41387 -7.18163 -6.00773 -4.01791 2.18029 2.85466 3.35984 3.39449 3.43101 3.50612 3.78284 4.16307 4.20231 4.44708 4.49514 4.60614 4.66709 4.73098 4.79518 4.83700 4.84977 4.93634 5.03101 5.14660 5.29652 5.31173 5.35290 5.38659 5.41346 5.44067 5.49216 5.54749 5.61378 5.62822 5.68590 5.73652 5.82713 6.06697 6.06876 6.20047 6.31301 6.41236 6.58808 6.75022 6.78173 7.09446 7.28659 7.34304 7.55550 7.82028 8.05836 8.15354 8.22537 8.22665 8.57312 9.05896 9.62339 11.10136 Molecular weight = 328.23amu Principal moments of inertia in cm(-1) A = 0.033438 B = 0.001668 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.176459 B =16786.589010 C =17147.140902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.132 3.868 3 N -0.746 5.746 4 C 0.719 3.281 5 O -0.588 6.588 6 N -0.634 5.634 7 C 0.097 3.903 8 C -0.118 4.118 9 C 0.077 3.923 10 H 0.094 0.906 11 N -0.662 5.662 12 C 0.023 3.977 13 C 0.116 3.884 14 H 0.093 0.907 15 O -0.536 6.536 16 C 0.025 3.975 17 N -0.529 5.529 18 C 0.036 3.964 19 C 0.193 3.807 20 C -0.506 4.506 21 H 0.063 0.937 22 C 0.054 3.946 23 N -0.901 5.901 24 Si 0.899 3.101 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.276 1.276 28 C 0.099 3.901 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.395 0.605 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.345 0.655 40 H 0.039 0.961 41 H 0.078 0.922 42 H 0.368 0.632 43 H 0.027 0.973 44 H 0.070 0.930 45 H 0.008 0.992 46 H 0.075 0.925 47 H 0.046 0.954 48 H -0.011 1.011 49 H 0.028 0.972 50 H 0.261 0.739 51 H 0.067 0.933 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.097 -10.841 -1.759 32.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.008 3.992 3 N -0.403 5.403 4 C 0.421 3.579 5 O -0.466 6.466 6 N -0.373 5.373 7 C -0.026 4.026 8 C -0.157 4.157 9 C -0.035 4.035 10 H 0.112 0.888 11 N -0.292 5.292 12 C -0.107 4.107 13 C 0.056 3.944 14 H 0.111 0.889 15 O -0.339 6.339 16 C -0.105 4.105 17 N -0.253 5.253 18 C -0.113 4.113 19 C 0.068 3.932 20 C -0.545 4.545 21 H 0.082 0.918 22 C -0.147 4.147 23 N -0.540 5.540 24 Si 0.727 3.273 25 H -0.203 1.203 26 H -0.214 1.214 27 H -0.201 1.201 28 C -0.027 4.027 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.230 0.770 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.165 0.835 40 H 0.057 0.943 41 H 0.096 0.904 42 H 0.214 0.786 43 H 0.045 0.955 44 H 0.089 0.911 45 H 0.026 0.974 46 H 0.093 0.907 47 H 0.065 0.935 48 H 0.007 0.993 49 H 0.046 0.954 50 H 0.071 0.929 51 H 0.085 0.915 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -30.654 -10.874 -1.088 32.544 hybrid contribution 0.978 -0.642 -0.810 1.423 sum -29.676 -11.516 -1.898 31.889 Atomic orbital electron populations 1.22011 0.94352 1.03357 1.02504 1.21168 0.93863 0.81701 1.02460 1.45187 1.05203 1.09161 1.80764 1.15457 0.82656 0.81816 0.77973 1.90950 1.55057 1.42484 1.58112 1.47469 1.07816 1.03745 1.78252 1.22367 0.94495 0.84884 1.00874 1.22770 0.93263 0.97972 1.01648 1.22700 0.92564 0.90586 0.97612 0.88768 1.60494 1.06196 1.51991 1.10550 1.22829 0.90256 1.00482 0.97113 1.21879 0.90255 0.87492 0.94807 0.88948 1.86594 1.89499 1.21011 1.36820 1.22724 0.93175 0.99387 0.95226 1.62028 1.09593 1.33712 1.19974 1.22260 1.00206 0.91729 0.97075 1.19738 0.85515 0.94520 0.93449 1.21139 1.00146 1.38754 0.94439 0.91837 1.24991 0.98235 0.96190 0.95238 1.69951 1.23966 1.47065 1.13060 0.86542 0.80273 0.79635 0.80846 1.20302 1.21406 1.20116 1.22683 0.81604 0.96046 1.02319 0.90565 0.91964 0.91980 0.91604 0.91583 0.77038 0.90932 0.91311 0.89257 0.89856 0.83498 0.94300 0.90398 0.78556 0.95531 0.91105 0.97368 0.90658 0.93516 0.99337 0.95357 0.92921 0.91459 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.53 10.03 37.16 0.37 -0.16 16 2 C 0.13 0.85 6.39 -4.04 -0.03 0.83 16 3 N -0.75 -5.49 5.52 -65.22 -0.36 -5.85 16 4 C 0.72 8.02 8.49 -86.92 -0.74 7.29 16 5 O -0.59 -9.24 16.67 5.29 0.09 -9.15 16 6 N -0.63 -5.66 3.33 -176.21 -0.59 -6.25 16 7 C 0.10 0.52 6.57 -2.53 -0.02 0.50 16 8 C -0.12 -0.70 6.77 -24.58 -0.17 -0.87 16 9 C 0.08 0.59 3.28 -65.85 -0.22 0.37 16 10 H 0.09 0.69 7.83 -51.93 -0.41 0.28 16 11 N -0.66 -6.18 6.25 -104.76 -0.65 -6.84 16 12 C 0.02 0.24 5.21 -3.82 -0.02 0.22 16 13 C 0.12 1.60 3.13 -26.73 -0.08 1.52 16 14 H 0.09 1.34 6.34 -51.93 -0.33 1.01 16 15 O -0.54 -8.16 13.15 -35.23 -0.46 -8.63 16 16 C 0.02 0.42 4.59 -3.82 -0.02 0.40 16 17 N -0.53 -11.47 4.70 -244.37 -1.15 -12.62 16 18 C 0.04 0.72 9.15 60.07 0.55 1.26 16 19 C 0.19 5.07 4.72 -4.98 -0.02 5.05 16 20 C -0.51 -14.43 8.46 -34.44 -0.29 -14.72 16 21 H 0.06 1.80 7.12 -52.48 -0.37 1.43 16 22 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 23 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 24 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 28 C 0.10 0.92 6.59 -3.04 -0.02 0.90 16 29 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.40 1.81 6.95 -40.82 -0.28 1.53 16 35 H 0.07 0.27 7.30 -51.93 -0.38 -0.11 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.35 3.31 8.05 -39.29 -0.32 2.99 16 40 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 42 H 0.37 4.64 9.04 45.56 0.41 5.05 16 43 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 44 H 0.07 1.19 7.93 -51.93 -0.41 0.78 16 45 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 46 H 0.07 1.62 6.76 -51.93 -0.35 1.27 16 47 H 0.05 0.81 6.37 -51.93 -0.33 0.48 16 48 H -0.01 -0.31 8.12 -51.93 -0.42 -0.74 16 49 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 50 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 51 H 0.07 0.70 7.49 -51.93 -0.39 0.31 16 52 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 413.92 15.07 6.24 6.24 Total: -1.00 -35.27 413.92 -10.58 -45.86 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -8.62 Total: 2.52 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -0.79 Total: 4.05 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -2.01 Total: -57.77 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.38 Total: -17.78 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.27 -10.58 -45.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569715725.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.941 kcal (2) G-P(sol) polarization free energy of solvation -35.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds