Wall clock time and date at job start Tue Mar 31 2020 04:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46737 * 2 1 4 4 C 1.34782 * 119.99591 * 180.02562 * 3 2 1 5 5 O 1.21588 * 120.00125 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99605 * 180.02562 * 4 3 2 7 7 C 1.47020 * 125.65068 * 359.96546 * 6 4 3 8 8 C 1.54322 * 107.27286 * 178.98194 * 7 6 4 9 9 C 1.55162 * 102.94100 * 337.80829 * 8 7 6 10 10 H 1.09007 * 111.00194 * 277.38996 * 9 8 7 11 11 N 1.46894 * 111.00456 * 153.57663 * 9 8 7 12 12 C 1.46908 * 111.00064 * 158.17709 * 11 9 8 13 13 C 1.53001 * 109.46997 * 180.02562 * 12 11 9 14 14 H 1.08999 * 109.47304 * 305.00183 * 13 12 11 15 15 O 1.42893 * 109.47331 * 65.00536 * 13 12 11 16 16 C 1.53003 * 109.46641 * 185.00224 * 13 12 11 17 17 N 1.46899 * 109.46917 * 177.28360 * 16 13 12 18 18 C 1.46896 * 111.00056 * 160.25582 * 17 16 13 19 19 C 1.46898 * 111.00008 * 284.21047 * 17 16 13 20 20 C 1.50704 * 109.47043 * 170.00036 * 19 17 16 21 21 H 1.07996 * 120.00265 * 0.02562 * 20 19 17 22 22 C 1.37883 * 119.99759 * 179.97438 * 20 19 17 23 23 N 1.31509 * 120.00054 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99579 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.46907 * 269.99695 * 24 22 20 26 26 H 1.48499 * 109.47646 * 29.99706 * 24 22 20 27 27 H 1.48498 * 109.47015 * 149.99839 * 24 22 20 28 28 C 1.47467 * 125.62642 * 179.97438 * 6 4 3 29 29 H 1.08998 * 109.47421 * 59.99948 * 1 2 3 30 30 H 1.09004 * 109.47294 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46908 * 299.99560 * 1 2 3 32 32 H 1.08996 * 109.46622 * 240.00284 * 2 1 3 33 33 H 1.08998 * 109.47421 * 120.00052 * 2 1 3 34 34 H 0.96997 * 119.99981 * 0.02562 * 3 2 1 35 35 H 1.09004 * 109.88258 * 59.56552 * 7 6 4 36 36 H 1.09000 * 110.01247 * 298.46893 * 7 6 4 37 37 H 1.09001 * 110.72054 * 219.44903 * 8 7 6 38 38 H 1.09000 * 110.87866 * 96.23818 * 8 7 6 39 39 H 1.00896 * 111.00705 * 282.13101 * 11 9 8 40 40 H 1.08997 * 109.46484 * 59.99998 * 12 11 9 41 41 H 1.08997 * 109.46983 * 299.99956 * 12 11 9 42 42 H 0.96702 * 114.00184 * 59.99741 * 15 13 12 43 43 H 1.09001 * 109.47328 * 57.28667 * 16 13 12 44 44 H 1.09001 * 109.47134 * 297.28457 * 16 13 12 45 45 H 1.09002 * 109.47252 * 189.21719 * 18 17 16 46 46 H 1.09003 * 109.47398 * 309.21634 * 18 17 16 47 47 H 1.09001 * 109.47318 * 69.21340 * 18 17 16 48 48 H 1.09001 * 109.47556 * 49.99874 * 19 17 16 49 49 H 1.09000 * 109.47047 * 289.99784 * 19 17 16 50 50 H 0.97000 * 120.00100 * 0.02562 * 23 22 20 51 51 H 1.09005 * 110.35327 * 85.24835 * 28 6 4 52 52 H 1.08994 * 110.40419 * 322.90972 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6276 -0.0005 5 8 4.1335 0.7034 -0.0005 6 7 3.7926 2.8982 0.0000 7 6 2.9518 4.1043 0.0004 8 6 3.8984 5.3228 0.0271 9 6 5.2088 4.7320 0.6114 10 1 5.1671 4.6898 1.6998 11 7 6.3784 5.4985 0.1614 12 6 7.5166 5.3038 1.0696 13 6 8.7127 6.1163 0.5696 14 1 8.9298 5.8452 -0.4636 15 8 8.4056 7.5100 0.6419 16 6 9.9331 5.8171 1.4426 17 7 11.0974 6.5470 0.9233 18 6 12.1396 6.6749 1.9505 19 6 11.6264 5.9023 -0.2860 20 6 12.6527 6.8010 -0.9264 21 1 12.8887 7.7555 -0.4796 22 6 13.2912 6.4043 -2.0824 23 7 13.0049 5.2414 -2.6257 24 14 14.5637 7.5180 -2.8757 25 1 13.8953 8.4185 -3.8493 26 1 15.2324 8.3308 -1.8280 27 1 15.5752 6.6903 -3.5807 28 6 5.2090 3.3086 0.0001 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.3879 2.1185 0.0004 35 1 2.3138 4.1111 0.8842 36 1 2.3380 4.1314 -0.8999 37 1 3.5038 6.1035 0.6775 38 1 4.0641 5.7081 -0.9789 39 1 6.6266 5.2567 -0.7862 40 1 7.7814 4.2469 1.0987 41 1 7.2439 5.6379 2.0706 42 1 8.2016 7.8221 1.5341 43 1 10.1383 4.7467 1.4257 44 1 9.7335 6.1328 2.4666 45 1 12.9157 7.3544 1.5982 46 1 11.7003 7.0690 2.8669 47 1 12.5764 5.6961 2.1488 48 1 10.8121 5.7227 -0.9880 49 1 12.0911 4.9533 -0.0182 50 1 12.3443 4.6629 -2.2135 51 1 5.5966 3.3333 -1.0184 52 1 5.8008 2.6314 0.6158 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569715726.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:51 Heat of formation + Delta-G solvation = -71.591008 kcal Electronic energy + Delta-G solvation = -28301.056430 eV Core-core repulsion = 24335.508644 eV Total energy + Delta-G solvation = -3965.547786 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.226 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.61447 -38.71380 -37.82023 -35.81691 -35.56492 -34.58892 -32.67439 -31.67635 -30.39288 -29.73657 -27.99254 -26.90739 -25.41737 -24.01599 -23.14318 -22.87550 -21.75474 -21.10719 -20.39030 -20.26769 -18.47515 -16.98729 -16.84724 -16.50240 -16.28695 -15.69188 -15.49060 -15.17779 -14.87751 -14.58346 -14.51925 -14.12016 -13.95969 -13.74604 -13.56591 -13.40063 -13.20419 -12.91898 -12.85086 -12.79235 -12.32350 -12.21129 -11.94094 -11.86883 -11.84692 -11.63306 -11.30171 -11.19483 -11.13023 -11.02667 -10.86176 -10.60807 -10.47475 -10.15521 -10.03595 -9.53710 -9.51134 -8.90725 -8.62291 -8.55334 -8.33144 -7.28899 -6.33303 -4.01293 2.22627 2.90013 3.47783 3.51246 3.54298 3.66970 3.83507 4.27105 4.28572 4.52994 4.55253 4.62008 4.64966 4.73125 4.78951 4.86596 4.87938 4.98152 5.12756 5.19812 5.30683 5.34810 5.41492 5.44700 5.46076 5.49083 5.53364 5.53872 5.62094 5.63207 5.68175 5.75235 5.86024 5.95351 6.01263 6.11347 6.26619 6.38754 6.64408 6.65427 6.80158 6.99291 7.08603 7.14970 7.60741 7.79545 7.99021 8.16577 8.27292 8.34716 8.63151 8.90851 9.68822 11.05903 Molecular weight = 328.23amu Principal moments of inertia in cm(-1) A = 0.017820 B = 0.001982 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.901781 B =14122.436862 C =14760.926518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.132 3.868 3 N -0.746 5.746 4 C 0.719 3.281 5 O -0.588 6.588 6 N -0.634 5.634 7 C 0.099 3.901 8 C -0.118 4.118 9 C 0.077 3.923 10 H 0.092 0.908 11 N -0.662 5.662 12 C 0.026 3.974 13 C 0.119 3.881 14 H 0.099 0.901 15 O -0.531 6.531 16 C 0.023 3.977 17 N -0.524 5.524 18 C 0.042 3.958 19 C 0.183 3.817 20 C -0.585 4.585 21 H 0.057 0.943 22 C 0.012 3.988 23 N -0.916 5.916 24 Si 1.076 2.924 25 H -0.287 1.287 26 H -0.289 1.289 27 H -0.286 1.286 28 C 0.095 3.905 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.396 0.604 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.348 0.652 40 H 0.039 0.961 41 H 0.075 0.925 42 H 0.361 0.639 43 H 0.030 0.970 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.044 0.956 47 H 0.010 0.990 48 H 0.020 0.980 49 H -0.022 1.022 50 H 0.265 0.735 51 H 0.068 0.932 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.008 -4.487 9.301 28.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.008 3.992 3 N -0.403 5.403 4 C 0.421 3.579 5 O -0.465 6.465 6 N -0.373 5.373 7 C -0.025 4.025 8 C -0.156 4.156 9 C -0.035 4.035 10 H 0.111 0.889 11 N -0.292 5.292 12 C -0.104 4.104 13 C 0.059 3.941 14 H 0.116 0.884 15 O -0.333 6.333 16 C -0.107 4.107 17 N -0.248 5.248 18 C -0.107 4.107 19 C 0.057 3.943 20 C -0.623 4.623 21 H 0.076 0.924 22 C -0.191 4.191 23 N -0.553 5.553 24 Si 0.904 3.096 25 H -0.214 1.214 26 H -0.215 1.215 27 H -0.212 1.212 28 C -0.031 4.031 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.229 0.771 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.168 0.832 40 H 0.057 0.943 41 H 0.093 0.907 42 H 0.206 0.794 43 H 0.048 0.952 44 H 0.081 0.919 45 H 0.092 0.908 46 H 0.063 0.937 47 H 0.029 0.971 48 H 0.038 0.962 49 H -0.005 1.005 50 H 0.076 0.924 51 H 0.086 0.914 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -25.630 -4.128 7.543 27.034 hybrid contribution -1.011 -1.678 1.897 2.726 sum -26.642 -5.806 9.439 28.854 Atomic orbital electron populations 1.22011 0.94368 1.03334 1.02489 1.21168 0.93848 0.81728 1.02470 1.45174 1.05206 1.09138 1.80745 1.15470 0.82644 0.81831 0.77953 1.90953 1.55030 1.42435 1.58127 1.47457 1.07920 1.03663 1.78239 1.22060 0.94322 0.84775 1.01307 1.22607 0.93815 0.96016 1.03198 1.22800 0.91640 0.89289 0.99788 0.88943 1.60463 1.04904 1.57566 1.06299 1.22801 0.91662 0.98921 0.97026 1.21838 0.89826 0.81781 1.00671 0.88360 1.86690 1.91354 1.22743 1.32562 1.22734 0.93700 0.96454 0.97778 1.61941 1.05972 1.50863 1.05979 1.22194 0.95404 0.99565 0.93496 1.19886 0.94717 0.92749 0.86929 1.21990 1.23244 1.05315 1.11770 0.92437 1.25859 0.99981 0.98388 0.94861 1.70773 1.33112 1.09833 1.41543 0.83446 0.75663 0.74809 0.75674 1.21391 1.21488 1.21175 1.22972 0.81667 0.97016 1.01406 0.91962 0.90578 0.92004 0.91569 0.91610 0.77055 0.91662 0.91531 0.89468 0.89694 0.83237 0.94293 0.90690 0.79373 0.95211 0.91907 0.90785 0.93735 0.97109 0.96188 1.00486 0.92445 0.91353 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.62 10.03 37.16 0.37 -0.25 16 2 C 0.13 0.94 6.39 -4.04 -0.03 0.91 16 3 N -0.75 -6.05 5.52 -65.22 -0.36 -6.41 16 4 C 0.72 8.67 8.49 -86.92 -0.74 7.93 16 5 O -0.59 -9.77 16.60 5.29 0.09 -9.68 16 6 N -0.63 -6.31 3.33 -176.21 -0.59 -6.89 16 7 C 0.10 0.63 6.15 -3.07 -0.02 0.61 16 8 C -0.12 -0.82 6.65 -24.89 -0.17 -0.98 16 9 C 0.08 0.68 3.34 -65.56 -0.22 0.46 16 10 H 0.09 0.81 7.87 -51.93 -0.41 0.40 16 11 N -0.66 -7.15 6.34 -104.46 -0.66 -7.81 16 12 C 0.03 0.30 5.20 -3.82 -0.02 0.28 16 13 C 0.12 1.87 3.22 -26.73 -0.09 1.78 16 14 H 0.10 1.84 6.72 -51.93 -0.35 1.49 16 15 O -0.53 -8.80 13.20 -35.23 -0.47 -9.26 16 16 C 0.02 0.40 4.65 -3.82 -0.02 0.38 16 17 N -0.52 -11.40 4.60 -244.37 -1.12 -12.53 16 18 C 0.04 0.83 9.31 60.06 0.56 1.39 16 19 C 0.18 4.79 3.86 -4.97 -0.02 4.77 16 20 C -0.58 -16.96 8.58 -34.44 -0.30 -17.26 16 21 H 0.06 1.68 7.10 -52.49 -0.37 1.31 16 22 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 23 N -0.92 -28.34 13.65 55.43 0.76 -27.59 16 24 Si 1.08 25.93 29.90 -169.99 -5.08 20.85 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 C 0.09 1.00 6.52 -2.51 -0.02 0.98 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.20 8.14 -51.92 -0.42 -0.22 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.40 2.11 7.46 -40.82 -0.30 1.81 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.35 3.96 8.24 -39.29 -0.32 3.64 16 40 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 42 H 0.36 4.57 9.05 45.56 0.41 4.98 16 43 H 0.03 0.52 8.00 -51.93 -0.42 0.10 16 44 H 0.06 0.91 7.75 -51.93 -0.40 0.51 16 45 H 0.07 1.58 7.01 -51.93 -0.36 1.21 16 46 H 0.04 0.73 7.85 -51.93 -0.41 0.32 16 47 H 0.01 0.21 8.07 -51.93 -0.42 -0.21 16 48 H 0.02 0.55 6.46 -51.93 -0.34 0.22 16 49 H -0.02 -0.62 7.94 -51.93 -0.41 -1.03 16 50 H 0.27 8.18 7.22 -40.82 -0.29 7.89 16 51 H 0.07 0.76 7.77 -51.93 -0.40 0.35 16 52 H 0.08 0.94 8.04 -51.93 -0.42 0.52 16 LS Contribution 414.36 15.07 6.24 6.24 Total: -1.00 -36.51 414.36 -10.64 -47.15 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -8.66 Total: 4.66 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -0.79 Total: 1.27 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: -1.97 Total: -61.23 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.38 Total: -18.94 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -5.08 Total: 20.85 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -36.51 -10.64 -47.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569715726.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.442 kcal (2) G-P(sol) polarization free energy of solvation -36.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds