Wall clock time and date at job start Tue Mar 31 2020 04:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.46823 * 2 1 4 4 C 1.34783 * 119.99761 * 179.97438 * 3 2 1 5 5 O 1.21589 * 119.99943 * 0.02562 * 4 3 2 6 6 N 1.34772 * 119.99859 * 179.97438 * 4 3 2 7 7 C 1.47417 * 125.65177 * 0.04285 * 6 4 3 8 8 C 1.55122 * 104.94678 * 203.96981 * 7 6 4 9 9 C 1.55163 * 101.48361 * 323.22001 * 8 7 6 10 10 H 1.08995 * 110.72143 * 276.83393 * 9 8 7 11 11 N 1.46896 * 110.71889 * 153.73515 * 9 8 7 12 12 C 1.46900 * 110.99933 * 157.44381 * 11 9 8 13 13 C 1.52999 * 109.46919 * 179.97438 * 12 11 9 14 14 H 1.09009 * 109.47061 * 60.00356 * 13 12 11 15 15 O 1.42898 * 109.47703 * 300.00121 * 13 12 11 16 16 C 1.53001 * 109.47093 * 179.97438 * 13 12 11 17 17 N 1.46903 * 109.47263 * 182.16360 * 16 13 12 18 18 C 1.46904 * 110.99653 * 199.76708 * 17 16 13 19 19 C 1.46892 * 111.00060 * 75.81239 * 17 16 13 20 20 C 1.50704 * 109.47187 * 189.99692 * 19 17 16 21 21 H 1.08004 * 119.99642 * 0.02562 * 20 19 17 22 22 C 1.37873 * 120.00093 * 179.97438 * 20 19 17 23 23 N 1.31514 * 120.00193 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99746 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47072 * 180.02562 * 24 22 20 26 26 H 1.48502 * 109.46843 * 299.99959 * 24 22 20 27 27 H 1.48500 * 109.47057 * 60.00221 * 24 22 20 28 28 C 1.47024 * 125.64755 * 180.02562 * 6 4 3 29 29 H 1.09003 * 109.47084 * 299.99922 * 1 2 3 30 30 H 1.09000 * 109.46824 * 59.99923 * 1 2 3 31 31 H 1.09007 * 109.46965 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47531 * 239.99869 * 2 1 3 33 33 H 1.09000 * 109.46824 * 120.00077 * 2 1 3 34 34 H 0.96992 * 120.00298 * 0.02562 * 3 2 1 35 35 H 1.09005 * 110.36848 * 322.93004 * 7 6 4 36 36 H 1.08998 * 110.36701 * 85.14030 * 7 6 4 37 37 H 1.08999 * 111.16585 * 205.13147 * 8 7 6 38 38 H 1.08993 * 110.93765 * 81.21439 * 8 7 6 39 39 H 1.00907 * 110.99970 * 281.39653 * 11 9 8 40 40 H 1.09003 * 109.47236 * 60.00242 * 12 11 9 41 41 H 1.08998 * 109.47014 * 299.99695 * 12 11 9 42 42 H 0.96701 * 113.99249 * 300.00084 * 15 13 12 43 43 H 1.09000 * 109.46974 * 62.16075 * 16 13 12 44 44 H 1.09004 * 109.46983 * 302.15883 * 16 13 12 45 45 H 1.09000 * 109.47467 * 291.00851 * 18 17 16 46 46 H 1.09005 * 109.47255 * 51.00992 * 18 17 16 47 47 H 1.09003 * 109.46956 * 171.01041 * 18 17 16 48 48 H 1.09001 * 109.47233 * 70.00162 * 19 17 16 49 49 H 1.08997 * 109.47255 * 310.00019 * 19 17 16 50 50 H 0.96995 * 119.99647 * 359.97438 * 23 22 20 51 51 H 1.09006 * 109.88174 * 59.55756 * 28 6 4 52 52 H 1.08998 * 110.00972 * 298.47130 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1335 0.7034 0.0005 6 7 3.7926 2.8982 0.0000 7 6 2.9496 4.1075 -0.0002 8 6 3.8442 5.2187 -0.6097 9 6 5.2342 4.8505 -0.0268 10 1 5.3488 5.2518 0.9801 11 7 6.3097 5.3344 -0.9025 12 6 7.5675 5.4839 -0.1584 13 6 8.6614 5.9878 -1.1019 14 1 8.3678 6.9523 -1.5165 15 8 8.8447 5.0489 -2.1635 16 6 9.9712 6.1441 -0.3267 17 7 11.0084 6.6770 -1.2202 18 6 12.3508 6.4100 -0.6865 19 6 10.8121 8.1133 -1.4570 20 6 11.7333 8.5715 -2.5582 21 1 12.3978 7.8660 -3.0347 22 6 11.7269 9.8910 -2.9580 23 7 10.9173 10.7499 -2.3780 24 14 12.8684 10.4586 -4.3234 25 1 12.6700 11.9107 -4.5628 26 1 14.2775 10.2110 -3.9256 27 1 12.5654 9.7055 -5.5669 28 6 5.2046 3.3078 -0.0001 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.3880 2.1185 0.0004 35 1 2.0636 3.9523 -0.6160 36 1 2.6619 4.3696 1.0179 37 1 3.5288 6.2064 -0.2735 38 1 3.8493 5.1614 -1.6981 39 1 6.4303 4.7251 -1.6978 40 1 7.8614 4.5194 0.2558 41 1 7.4275 6.1998 0.6515 42 1 9.1076 4.1668 -1.8672 43 1 10.2851 5.1728 0.0558 44 1 9.8209 6.8313 0.5059 45 1 12.5116 7.0098 0.2093 46 1 12.4388 5.3527 -0.4365 47 1 13.0981 6.6695 -1.4364 48 1 11.0343 8.6658 -0.5441 49 1 9.7779 8.2953 -1.7492 50 1 10.3244 10.4550 -1.6693 51 1 5.7054 2.9119 -0.8836 52 1 5.6988 2.9432 0.9005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569715727.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:53 Heat of formation + Delta-G solvation = -71.621540 kcal Electronic energy + Delta-G solvation = -28278.477612 eV Core-core repulsion = 24312.928502 eV Total energy + Delta-G solvation = -3965.549110 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.226 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.64567 -38.77611 -37.84696 -35.86567 -35.59346 -34.55915 -32.67229 -31.65890 -30.41808 -29.80119 -28.00985 -26.89809 -25.43163 -24.03121 -23.13885 -22.93916 -21.64298 -21.13622 -20.40422 -20.28282 -18.51082 -17.11693 -16.82921 -16.39256 -16.34639 -15.81385 -15.64125 -15.16979 -14.80154 -14.63524 -14.51434 -14.19216 -14.11729 -13.62908 -13.47619 -13.41573 -13.22328 -12.84653 -12.80888 -12.63091 -12.47859 -12.29859 -11.97501 -11.93872 -11.80513 -11.63844 -11.30582 -11.20348 -11.16835 -11.03750 -10.86631 -10.61892 -10.50104 -10.15331 -10.00037 -9.63789 -9.54445 -8.92841 -8.60908 -8.57542 -8.32560 -7.28566 -6.32266 -4.00093 2.20662 2.87486 3.47931 3.51358 3.53459 3.69219 3.82701 4.19874 4.24959 4.51351 4.55264 4.62390 4.66479 4.73374 4.80467 4.86099 4.87627 4.93866 5.06738 5.19591 5.28341 5.32433 5.37026 5.42762 5.44623 5.45019 5.51485 5.52778 5.62058 5.65129 5.70947 5.77126 5.85936 5.94846 6.01196 6.08862 6.26401 6.43404 6.61542 6.65091 6.81658 7.01069 7.10102 7.21240 7.57851 7.79540 7.98854 8.05520 8.24628 8.35688 8.63498 8.91981 9.69931 11.07033 Molecular weight = 328.23amu Principal moments of inertia in cm(-1) A = 0.026045 B = 0.001845 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.807538 B =15170.589914 C =15604.322296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.132 3.868 3 N -0.746 5.746 4 C 0.720 3.280 5 O -0.589 6.589 6 N -0.633 5.633 7 C 0.098 3.902 8 C -0.119 4.119 9 C 0.077 3.923 10 H 0.094 0.906 11 N -0.667 5.667 12 C 0.027 3.973 13 C 0.116 3.884 14 H 0.109 0.891 15 O -0.541 6.541 16 C 0.024 3.976 17 N -0.524 5.524 18 C 0.042 3.958 19 C 0.183 3.817 20 C -0.585 4.585 21 H 0.056 0.944 22 C 0.013 3.987 23 N -0.915 5.915 24 Si 1.072 2.928 25 H -0.283 1.283 26 H -0.289 1.289 27 H -0.287 1.287 28 C 0.099 3.901 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.396 0.604 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.353 0.647 40 H 0.032 0.968 41 H 0.080 0.920 42 H 0.360 0.640 43 H 0.061 0.939 44 H 0.032 0.968 45 H 0.010 0.990 46 H 0.043 0.957 47 H 0.073 0.927 48 H -0.022 1.022 49 H 0.022 0.978 50 H 0.265 0.735 51 H 0.068 0.932 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.528 -17.412 8.586 28.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.008 3.992 3 N -0.403 5.403 4 C 0.421 3.579 5 O -0.467 6.467 6 N -0.372 5.372 7 C -0.026 4.026 8 C -0.158 4.158 9 C -0.035 4.035 10 H 0.112 0.888 11 N -0.299 5.299 12 C -0.103 4.103 13 C 0.056 3.944 14 H 0.127 0.873 15 O -0.343 6.343 16 C -0.106 4.106 17 N -0.248 5.248 18 C -0.107 4.107 19 C 0.057 3.943 20 C -0.624 4.624 21 H 0.075 0.925 22 C -0.190 4.190 23 N -0.552 5.552 24 Si 0.901 3.099 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.213 1.213 28 C -0.026 4.026 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.230 0.770 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.174 0.826 40 H 0.050 0.950 41 H 0.099 0.901 42 H 0.205 0.795 43 H 0.079 0.921 44 H 0.050 0.950 45 H 0.029 0.971 46 H 0.062 0.938 47 H 0.092 0.908 48 H -0.005 1.005 49 H 0.040 0.960 50 H 0.076 0.924 51 H 0.086 0.914 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.870 -15.925 6.934 27.152 hybrid contribution -0.341 -1.957 2.358 3.083 sum -21.211 -17.882 9.292 29.257 Atomic orbital electron populations 1.22014 0.94355 1.03345 1.02522 1.21165 0.93865 0.81710 1.02436 1.45187 1.05216 1.09163 1.80759 1.15451 0.82651 0.81806 0.77954 1.90943 1.55056 1.42497 1.58193 1.47465 1.07836 1.03744 1.78190 1.22390 0.94469 0.84854 1.00875 1.22817 0.93219 0.97992 1.01756 1.22691 0.92552 0.90538 0.97687 0.88801 1.60459 1.05250 1.54514 1.09659 1.22756 0.90250 1.00016 0.97276 1.21962 0.91054 0.93964 0.87393 0.87299 1.86706 1.90967 1.22820 1.33828 1.22714 0.94079 0.99311 0.94476 1.61945 1.00490 1.19099 1.43264 1.22195 0.92320 0.97951 0.98200 1.19886 0.97430 0.81522 0.95425 1.21964 1.23557 0.96546 1.20306 0.92539 1.25842 0.99028 0.93108 1.01040 1.70801 1.22520 1.37153 1.24723 0.83492 0.75087 0.76036 0.75315 1.20888 1.21566 1.21337 1.22676 0.81600 0.96103 1.02241 0.91988 0.91942 0.90573 0.91576 0.91633 0.77020 0.90900 0.91329 0.89132 0.89796 0.82635 0.94980 0.90137 0.79463 0.92082 0.95024 0.97101 0.93786 0.90786 1.00492 0.95993 0.92447 0.91378 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.58 10.03 37.16 0.37 -0.21 16 2 C 0.13 0.89 6.39 -4.04 -0.03 0.86 16 3 N -0.75 -5.78 5.52 -65.22 -0.36 -6.14 16 4 C 0.72 8.30 8.49 -86.92 -0.74 7.56 16 5 O -0.59 -9.37 16.67 5.29 0.09 -9.28 16 6 N -0.63 -6.02 3.33 -176.11 -0.59 -6.60 16 7 C 0.10 0.60 6.58 -2.42 -0.02 0.58 16 8 C -0.12 -0.85 6.79 -24.46 -0.17 -1.02 16 9 C 0.08 0.67 3.25 -65.88 -0.21 0.45 16 10 H 0.09 0.78 7.86 -51.93 -0.41 0.37 16 11 N -0.67 -7.32 6.37 -104.79 -0.67 -7.99 16 12 C 0.03 0.31 5.26 -3.82 -0.02 0.29 16 13 C 0.12 1.83 3.31 -26.73 -0.09 1.74 16 14 H 0.11 2.10 6.73 -51.92 -0.35 1.75 16 15 O -0.54 -8.75 12.58 -35.23 -0.44 -9.19 16 16 C 0.02 0.41 4.65 -3.82 -0.02 0.39 16 17 N -0.52 -11.42 4.59 -244.36 -1.12 -12.54 16 18 C 0.04 0.83 9.31 60.07 0.56 1.39 16 19 C 0.18 4.79 3.86 -4.98 -0.02 4.77 16 20 C -0.59 -16.99 8.58 -34.44 -0.30 -17.28 16 21 H 0.06 1.65 7.10 -52.48 -0.37 1.28 16 22 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 23 N -0.92 -28.23 13.65 55.43 0.76 -27.48 16 24 Si 1.07 25.83 29.90 -169.99 -5.08 20.75 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 28 C 0.10 0.98 6.57 -3.06 -0.02 0.96 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.40 2.00 6.95 -40.82 -0.28 1.71 16 35 H 0.07 0.33 7.30 -51.93 -0.38 -0.05 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.35 4.04 7.49 -39.29 -0.29 3.75 16 40 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 42 H 0.36 4.43 9.05 45.56 0.41 4.84 16 43 H 0.06 0.89 7.75 -51.93 -0.40 0.49 16 44 H 0.03 0.54 8.00 -51.93 -0.42 0.13 16 45 H 0.01 0.21 8.08 -51.93 -0.42 -0.21 16 46 H 0.04 0.73 7.85 -51.93 -0.41 0.32 16 47 H 0.07 1.58 7.01 -51.93 -0.36 1.21 16 48 H -0.02 -0.62 7.94 -51.93 -0.41 -1.03 16 49 H 0.02 0.61 6.47 -51.93 -0.34 0.27 16 50 H 0.27 8.15 7.22 -40.82 -0.29 7.86 16 51 H 0.07 0.75 7.53 -51.93 -0.39 0.36 16 52 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 412.28 15.07 6.21 6.21 Total: -1.00 -36.28 412.28 -10.55 -46.83 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -8.56 Total: 4.64 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -0.79 Total: 0.79 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -1.98 Total: -60.74 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.36 Total: -18.47 kcal Atomic # 14 Polarization: 25.83 SS G_CDS: -5.08 Total: 20.75 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -36.28 -10.55 -46.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569715727.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.791 kcal (2) G-P(sol) polarization free energy of solvation -36.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds