Wall clock time and date at job start Tue Mar 31 2020 04:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86807 * 119.99845 * 2 1 4 4 H 1.48499 * 109.47067 * 240.00112 * 3 2 1 5 5 H 1.48501 * 109.46758 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47216 * 119.99914 * 3 2 1 7 7 C 1.40145 * 120.00362 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99766 * 179.97438 * 7 2 1 9 9 C 1.41716 * 119.99679 * 0.02562 * 7 2 1 10 10 O 1.21785 * 120.00218 * 351.77190 * 9 7 2 11 11 N 1.34778 * 119.99697 * 171.77847 * 9 7 2 12 12 C 1.47280 * 121.13830 * 354.01777 * 11 9 7 13 13 C 1.53531 * 107.61294 * 222.13266 * 12 11 9 14 14 O 1.42961 * 108.79276 * 301.81870 * 13 12 11 15 15 C 1.35854 * 117.72685 * 49.33861 * 14 13 12 16 16 C 1.38667 * 119.66250 * 160.01351 * 15 14 13 17 17 C 1.38405 * 120.05004 * 179.62888 * 16 15 14 18 18 F 1.35103 * 119.85777 * 179.97438 * 17 16 15 19 19 C 1.38750 * 120.27883 * 0.02562 * 17 16 15 20 20 Br 1.89106 * 119.97153 * 180.02562 * 19 17 16 21 21 C 1.38169 * 120.05854 * 0.32151 * 19 17 16 22 22 C 1.38836 * 119.87727 * 359.47991 * 21 19 17 23 23 H 0.96994 * 120.00251 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.83201 * 341.66145 * 12 11 9 25 25 H 1.09005 * 109.83134 * 102.60517 * 12 11 9 26 26 H 1.08991 * 109.58408 * 61.61267 * 13 12 11 27 27 H 1.09003 * 109.58410 * 182.03139 * 13 12 11 28 28 H 1.08000 * 119.97355 * 359.65336 * 16 15 14 29 29 H 1.07994 * 120.06088 * 179.72402 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 3.0940 1.6965 -1.2125 5 1 1.2751 2.7465 -0.0006 6 1 3.0939 1.6965 1.2125 7 6 2.0070 -1.2136 -0.0005 8 1 3.0871 -1.2135 -0.0010 9 6 1.2985 -2.4409 -0.0016 10 8 0.0900 -2.4465 0.1488 11 7 1.9621 -3.6020 -0.1691 12 6 3.4011 -3.6184 -0.4825 13 6 3.6300 -4.6895 -1.5584 14 8 3.1707 -5.9483 -1.0602 15 6 1.9297 -5.9954 -0.5094 16 6 1.2751 -7.2125 -0.3957 17 6 0.0138 -7.2707 0.1711 18 9 -0.6207 -8.4586 0.2795 19 6 -0.6022 -6.1143 0.6275 20 35 -2.3254 -6.2040 1.4012 21 6 0.0398 -4.8963 0.5117 22 6 1.3068 -4.8332 -0.0524 23 1 -0.4850 0.8400 -0.0004 24 1 3.7084 -2.6433 -0.8603 25 1 3.9718 -3.8656 0.4127 26 1 3.0738 -4.4279 -2.4585 27 1 4.6934 -4.7540 -1.7893 28 1 1.7500 -8.1157 -0.7494 29 1 -0.4415 -3.9955 0.8628 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585087641.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:28 Heat of formation + Delta-G solvation = -72.460948 kcal Electronic energy + Delta-G solvation = -20125.622202 eV Core-core repulsion = 16589.514075 eV Total energy + Delta-G solvation = -3536.108127 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 328.985 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.56904 -40.65560 -37.77960 -36.99448 -34.31797 -32.90827 -31.73375 -30.16004 -29.22639 -27.75144 -26.30062 -23.81593 -23.00864 -21.18859 -19.66696 -18.13259 -17.42357 -16.54092 -16.41771 -15.71013 -15.52460 -15.35255 -14.73026 -14.54103 -14.22911 -14.08772 -13.44596 -13.10940 -12.77150 -12.67508 -12.03875 -11.90132 -11.51980 -11.37904 -11.29278 -11.08819 -10.83110 -10.62175 -10.49339 -9.99036 -9.90234 -9.40919 -9.06349 -8.19720 -7.79831 -7.03871 -6.57665 -5.13103 1.35763 1.55903 1.95624 2.94211 3.00663 3.02801 3.27304 3.70700 3.79229 3.96849 4.22474 4.65164 4.81663 5.02982 5.20663 5.32782 5.40176 5.46284 5.66135 5.83092 5.91324 6.04641 6.08452 6.40506 6.71758 6.84378 7.04459 7.19549 7.51199 7.77577 7.92055 8.58918 8.88855 10.11401 10.31180 Molecular weight = 328.98amu Principal moments of inertia in cm(-1) A = 0.015736 B = 0.005172 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.981459 B = 5412.602036 C = 7112.664316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.088 3.912 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.533 4.533 8 H 0.076 0.924 9 C 0.547 3.453 10 O -0.555 6.555 11 N -0.571 5.571 12 C 0.076 3.924 13 C 0.044 3.956 14 O -0.312 6.312 15 C 0.099 3.901 16 C -0.155 4.155 17 C 0.100 3.900 18 F -0.133 7.133 19 C -0.129 4.129 20 Br -0.044 7.044 21 C -0.076 4.076 22 C 0.124 3.876 23 H 0.277 0.723 24 H 0.115 0.885 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.116 0.884 28 H 0.144 0.856 29 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.438 -8.584 -0.583 9.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.136 4.136 3 Si 0.738 3.262 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.568 4.568 8 H 0.094 0.906 9 C 0.360 3.640 10 O -0.439 6.439 11 N -0.296 5.296 12 C -0.048 4.048 13 C -0.032 4.032 14 O -0.226 6.226 15 C 0.050 3.950 16 C -0.175 4.175 17 C 0.077 3.923 18 F -0.112 7.112 19 C -0.210 4.210 20 Br 0.041 6.959 21 C -0.098 4.098 22 C 0.023 3.977 23 H 0.088 0.912 24 H 0.133 0.867 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.134 0.866 28 H 0.162 0.838 29 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 2.111 -8.528 -0.241 8.789 hybrid contribution 0.838 0.760 -0.274 1.164 sum 2.949 -7.769 -0.515 8.326 Atomic orbital electron populations 1.69949 1.07343 1.28574 1.30949 1.25789 0.94722 1.00805 0.92317 0.86292 0.79901 0.80150 0.79810 1.18934 1.20150 1.18858 1.20045 0.94430 0.89543 1.52758 0.90576 1.17131 0.87072 0.81376 0.78443 1.90477 1.14183 1.84246 1.54966 1.46461 1.08634 1.03947 1.70510 1.22458 0.82772 1.01368 0.98225 1.23383 1.00839 0.82419 0.96532 1.85950 1.28516 1.33957 1.74136 1.18251 0.86559 0.92464 0.97776 1.19915 0.93458 0.97450 1.06718 1.16783 0.91599 0.80103 1.03857 1.91481 1.81465 1.43921 1.94321 1.21691 0.94856 0.94992 1.09423 1.96613 1.18513 1.98977 1.81833 1.22077 0.93432 0.98033 0.96245 1.18190 0.94144 0.86437 0.98895 0.91152 0.86729 0.91048 0.91274 0.86594 0.83777 0.79061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -19.99 11.76 55.56 0.65 -19.34 15 2 C 0.09 2.18 5.49 -17.35 -0.10 2.09 15 3 Si 0.91 17.89 29.56 -169.99 -5.02 12.87 15 4 H -0.26 -4.99 7.11 56.52 0.40 -4.59 15 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 15 6 H -0.26 -5.07 7.11 56.52 0.40 -4.66 15 7 C -0.53 -13.28 8.50 -37.54 -0.32 -13.60 15 8 H 0.08 1.67 6.09 -52.48 -0.32 1.35 15 9 C 0.55 14.18 7.34 -14.93 -0.11 14.07 15 10 O -0.55 -16.12 11.77 5.11 0.06 -16.06 15 11 N -0.57 -12.37 3.00 -115.51 -0.35 -12.71 15 12 C 0.08 1.24 6.29 -3.34 -0.02 1.22 15 13 C 0.04 0.61 7.18 37.43 0.27 0.88 15 14 O -0.31 -5.04 10.33 -19.28 -0.20 -5.24 15 15 C 0.10 1.79 6.52 -38.93 -0.25 1.54 15 16 C -0.15 -2.57 9.95 -39.36 -0.39 -2.97 15 17 C 0.10 1.76 7.27 -39.33 -0.29 1.48 15 18 F -0.13 -2.24 16.72 2.25 0.04 -2.20 15 19 C -0.13 -2.48 6.23 -39.42 -0.25 -2.72 15 20 Br -0.04 -0.77 33.27 -68.01 -2.26 -3.04 15 21 C -0.08 -1.64 8.67 -39.39 -0.34 -1.98 15 22 C 0.12 2.60 6.33 -83.44 -0.53 2.07 15 23 H 0.28 6.78 8.29 -40.82 -0.34 6.44 15 24 H 0.11 1.79 6.03 -51.93 -0.31 1.48 15 25 H 0.07 1.09 8.14 -51.93 -0.42 0.66 15 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 27 H 0.12 1.12 8.14 -51.93 -0.42 0.70 15 28 H 0.14 2.01 8.06 -52.49 -0.42 1.58 15 29 H 0.19 4.75 5.14 -52.63 -0.27 4.48 15 LS Contribution 275.54 15.07 4.15 4.15 Total: -1.00 -29.45 275.54 -6.98 -36.43 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -1.73 Total: 3.06 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -2.32 Total: 2.08 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: 0.31 Total: -32.05 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.14 Total: -21.30 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.02 Total: 12.87 kcal Atomic # 35 Polarization: -0.77 SS G_CDS: -2.26 Total: -3.04 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.45 -6.98 -36.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585087641.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.029 kcal (2) G-P(sol) polarization free energy of solvation -29.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds