Wall clock time and date at job start Tue Mar 31 2020 05:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86799 * 119.99797 * 2 1 4 4 H 1.48504 * 109.46847 * 269.99365 * 3 2 1 5 5 H 1.48493 * 109.47469 * 29.99754 * 3 2 1 6 6 H 1.48502 * 109.46807 * 150.00039 * 3 2 1 7 7 C 1.39894 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00001 * 163.33171 * 7 2 1 9 9 C 1.41150 * 120.00031 * 343.32449 * 7 2 1 10 10 C 1.40865 * 120.15107 * 156.31248 * 9 7 2 11 11 C 1.36469 * 119.83872 * 179.97438 * 10 9 7 12 12 Cl 1.73608 * 119.91895 * 180.02562 * 11 10 9 13 13 C 1.39564 * 120.16043 * 0.02562 * 11 10 9 14 14 N 1.39292 * 119.84396 * 180.02562 * 13 11 10 15 15 C 1.34778 * 120.00280 * 137.50136 * 14 13 11 16 16 O 1.21282 * 119.99915 * 356.45639 * 15 14 13 17 17 C 1.50706 * 120.00371 * 176.45292 * 15 14 13 18 18 H 1.08994 * 110.35087 * 302.85743 * 17 15 14 19 19 C 1.54952 * 110.30563 * 65.00163 * 17 15 14 20 20 C 1.55300 * 100.97731 * 155.34211 * 19 17 15 21 21 C 1.54439 * 102.22815 * 325.91587 * 20 19 17 22 22 O 1.43235 * 107.60658 * 21.29894 * 21 20 19 23 23 C 1.39558 * 120.31026 * 0.26724 * 13 11 10 24 24 Cl 1.73604 * 119.92440 * 179.72907 * 23 13 11 25 25 C 1.36481 * 120.15709 * 359.45138 * 23 13 11 26 26 H 0.96999 * 120.00036 * 0.02562 * 1 2 3 27 27 H 1.08004 * 120.08098 * 0.02562 * 10 9 7 28 28 H 0.97001 * 120.00419 * 317.49678 * 14 13 11 29 29 H 1.08998 * 111.11839 * 273.28073 * 19 17 15 30 30 H 1.08997 * 111.12522 * 37.39410 * 19 17 15 31 31 H 1.09000 * 110.85370 * 84.07501 * 20 19 17 32 32 H 1.08999 * 110.84503 * 207.69540 * 20 19 17 33 33 H 1.08999 * 109.78845 * 261.79953 * 21 20 19 34 34 H 1.08995 * 109.92567 * 140.87979 * 21 20 19 35 35 H 1.07998 * 120.08251 * 180.26841 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4904 2.0463 -1.4001 5 1 1.4402 2.6527 0.6999 6 1 3.5403 1.4402 0.7000 7 6 2.0083 -1.2115 0.0005 8 1 3.0543 -1.2314 -0.2677 9 6 1.3470 -2.4081 0.3518 10 6 1.8396 -3.6478 -0.1006 11 6 1.1955 -4.8007 0.2433 12 17 1.8012 -6.3298 -0.3126 13 6 0.0512 -4.7536 1.0408 14 7 -0.6007 -5.9345 1.3883 15 6 -1.0505 -6.1109 2.6466 16 8 -0.8315 -5.2697 3.4924 17 6 -1.8257 -7.3533 3.0025 18 1 -2.7039 -7.4481 2.3640 19 6 -0.9245 -8.6065 2.8673 20 6 -1.6322 -9.5863 3.8425 21 6 -2.1473 -8.6353 4.9450 22 8 -2.2154 -7.3189 4.3846 23 6 -0.4460 -3.5285 1.4876 24 17 -1.8742 -3.4809 2.4733 25 6 0.1913 -2.3680 1.1561 26 1 -0.4850 0.8400 -0.0004 27 1 2.7253 -3.6858 -0.7175 28 1 -0.7311 -6.6299 0.7248 29 1 -0.9363 -8.9905 1.8473 30 1 0.0939 -8.3951 3.1931 31 1 -2.4616 -10.0932 3.3493 32 1 -0.9235 -10.3068 4.2507 33 1 -1.4586 -8.6424 5.7898 34 1 -3.1382 -8.9492 5.2732 35 1 -0.1920 -1.4209 1.5061 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585125365.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:17 Heat of formation + Delta-G solvation = -63.298248 kcal Electronic energy + Delta-G solvation = -23386.628215 eV Core-core repulsion = 19629.514568 eV Total energy + Delta-G solvation = -3757.113647 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 329.037 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.17614 -38.78078 -37.34692 -35.84560 -35.25859 -34.48170 -33.19687 -32.18082 -30.20245 -29.37135 -28.78411 -25.46480 -23.49889 -21.82859 -21.71226 -21.24574 -19.64638 -17.75494 -17.57857 -17.09812 -16.19048 -15.62565 -15.31069 -14.84228 -14.68097 -14.61452 -14.01133 -13.43678 -13.25066 -13.17198 -13.04707 -12.67756 -12.15711 -12.07000 -11.82860 -11.61945 -11.51400 -11.35431 -11.29361 -11.09106 -10.97769 -10.56228 -10.28247 -10.25455 -9.98474 -9.81358 -9.78086 -9.35447 -9.09129 -8.56229 -7.55347 -7.33487 -7.00307 -4.60991 2.27172 2.51873 2.78047 2.92746 2.97846 3.03087 3.22729 3.32241 3.48704 3.76347 4.06852 4.28132 4.31529 4.65856 4.81957 5.01760 5.04800 5.28107 5.32397 5.48035 5.53560 5.64679 5.70248 5.93286 6.18464 6.41714 6.64205 6.72473 6.86935 6.89653 6.95545 7.29806 7.56300 7.59174 7.78524 8.04438 8.21448 8.51651 8.54887 8.83006 9.90308 Molecular weight = 329.04amu Principal moments of inertia in cm(-1) A = 0.019103 B = 0.003953 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.385932 B = 7080.945882 C = 8250.565868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.072 3.928 3 Si 0.916 3.084 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.439 4.439 8 H 0.087 0.913 9 C 0.121 3.879 10 C -0.208 4.208 11 C 0.009 3.991 12 Cl -0.110 7.110 13 C 0.007 3.993 14 N -0.650 5.650 15 C 0.488 3.512 16 O -0.484 6.484 17 C 0.071 3.929 18 H 0.091 0.909 19 C -0.146 4.146 20 C -0.153 4.153 21 C 0.048 3.952 22 O -0.352 6.352 23 C 0.019 3.981 24 Cl -0.078 7.078 25 C -0.151 4.151 26 H 0.288 0.712 27 H 0.114 0.886 28 H 0.396 0.604 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.751 -12.806 1.652 13.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.148 4.148 3 Si 0.739 3.261 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.467 4.467 8 H 0.105 0.895 9 C 0.117 3.883 10 C -0.229 4.229 11 C -0.019 4.019 12 Cl -0.081 7.081 13 C -0.088 4.088 14 N -0.297 5.297 15 C 0.273 3.727 16 O -0.355 6.355 17 C 0.009 3.991 18 H 0.109 0.891 19 C -0.184 4.184 20 C -0.191 4.191 21 C -0.029 4.029 22 O -0.270 6.270 23 C -0.009 4.009 24 Cl -0.049 7.049 25 C -0.171 4.171 26 H 0.099 0.901 27 H 0.132 0.868 28 H 0.230 0.770 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.987 -11.987 2.469 12.598 hybrid contribution 0.162 -0.010 -0.513 0.538 sum -2.825 -11.997 1.956 12.479 Atomic orbital electron populations 1.69799 1.07723 1.30164 1.32264 1.26035 0.94879 1.01904 0.92016 0.86171 0.80646 0.79808 0.79468 1.19195 1.19774 1.18131 1.19597 0.97987 0.90602 1.38559 0.89458 1.17382 0.90674 0.91709 0.88523 1.20572 1.03921 0.90640 1.07771 1.19992 0.94612 0.85198 1.02096 1.98263 1.87671 1.33160 1.89034 1.16285 0.97197 0.84327 1.10945 1.42624 1.58193 1.18120 1.10748 1.20188 0.81896 0.87806 0.82812 1.90838 1.54507 1.42159 1.48045 1.22744 0.97008 0.93750 0.85559 0.89128 1.23254 1.00197 0.93770 1.01182 1.23127 1.00828 0.98434 0.96712 1.23189 1.00903 0.82412 0.96374 1.88553 1.88182 1.27693 1.22580 1.20182 0.90512 0.93160 0.97093 1.98292 1.38790 1.98630 1.69202 1.21088 0.98636 0.96269 1.01127 0.90110 0.86811 0.76977 0.89126 0.89579 0.90289 0.89750 0.91213 0.91260 0.84237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.67 10.82 55.55 0.60 -18.07 16 2 C 0.07 1.67 5.17 -17.34 -0.09 1.58 16 3 Si 0.92 17.35 29.59 -169.99 -5.03 12.32 16 4 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 6 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 7 C -0.44 -10.68 9.05 -37.86 -0.34 -11.02 16 8 H 0.09 2.00 7.90 -52.48 -0.41 1.59 16 9 C 0.12 3.00 5.59 -106.81 -0.60 2.40 16 10 C -0.21 -4.72 9.50 -39.23 -0.37 -5.09 16 11 C 0.01 0.20 6.30 -39.73 -0.25 -0.05 16 12 Cl -0.11 -1.87 28.07 -51.86 -1.46 -3.33 16 13 C 0.01 0.16 6.11 -83.48 -0.51 -0.35 16 14 N -0.65 -11.66 4.79 -9.68 -0.05 -11.71 16 15 C 0.49 9.05 5.93 -10.98 -0.07 8.99 16 16 O -0.48 -11.12 12.61 -13.80 -0.17 -11.29 16 17 C 0.07 1.00 3.87 -26.85 -0.10 0.89 16 18 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 19 C -0.15 -1.54 6.54 -24.48 -0.16 -1.70 16 20 C -0.15 -1.29 7.02 -24.76 -0.17 -1.46 16 21 C 0.05 0.52 7.80 37.91 0.30 0.82 16 22 O -0.35 -5.56 10.60 -54.58 -0.58 -6.14 16 23 C 0.02 0.46 5.80 -39.72 -0.23 0.23 16 24 Cl -0.08 -1.76 24.09 -51.86 -1.25 -3.01 16 25 C -0.15 -3.79 8.41 -39.22 -0.33 -4.12 16 26 H 0.29 6.29 8.30 -40.82 -0.34 5.95 16 27 H 0.11 2.40 8.06 -52.48 -0.42 1.98 16 28 H 0.40 5.82 8.32 -40.82 -0.34 5.48 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.09 1.02 8.05 -51.93 -0.42 0.60 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.14 3.66 6.04 -52.49 -0.32 3.35 16 LS Contribution 324.48 15.07 4.89 4.89 Total: -1.00 -28.68 324.48 -9.56 -38.23 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -3.58 Total: 6.99 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -2.93 Total: -8.88 kcal Atomic # 7 Polarization: -30.33 SS G_CDS: 0.55 Total: -29.78 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.75 Total: -17.43 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Atomic # 17 Polarization: -3.63 SS G_CDS: -2.70 Total: -6.34 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.68 -9.56 -38.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585125365.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.067 kcal (2) G-P(sol) polarization free energy of solvation -28.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds