Wall clock time and date at job start Tue Mar 31 2020 05:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42899 * 109.47339 * 2 1 4 4 C 1.35898 * 117.00124 * 180.02562 * 3 2 1 5 5 C 1.38732 * 120.05444 * 359.71654 * 4 3 2 6 6 C 1.38149 * 119.94271 * 179.70606 * 5 4 3 7 7 C 1.38261 * 120.05534 * 0.59588 * 6 5 4 8 8 S 1.76200 * 119.94577 * 179.70106 * 7 6 5 9 9 O 1.42095 * 106.39967 * 23.52235 * 8 7 6 10 10 O 1.42098 * 106.39884 * 156.44063 * 8 7 6 11 11 N 1.65593 * 107.22005 * 269.98057 * 8 7 6 12 12 C 1.36934 * 119.99980 * 89.99761 * 11 8 7 13 13 H 1.08003 * 120.00437 * 326.59472 * 12 11 8 14 14 C 1.38812 * 120.00258 * 146.59521 * 12 11 8 15 15 N 1.31622 * 119.99712 * 336.21058 * 14 12 11 16 16 Si 1.86802 * 120.00310 * 156.20479 * 14 12 11 17 17 H 1.48498 * 109.47058 * 90.00192 * 16 14 12 18 18 H 1.48501 * 109.47209 * 210.00134 * 16 14 12 19 19 H 1.48494 * 109.47162 * 330.00186 * 16 14 12 20 20 C 1.46501 * 119.99969 * 270.00079 * 11 8 7 21 21 C 1.50696 * 109.47336 * 96.18270 * 20 11 8 22 22 O 1.20831 * 120.00037 * 359.97438 * 21 20 11 23 23 O 1.34230 * 120.00341 * 180.02562 * 21 20 11 24 24 C 1.38269 * 120.11164 * 359.68212 * 7 6 5 25 25 C 1.38145 * 120.05587 * 0.02562 * 24 7 6 26 26 H 1.08997 * 109.47231 * 300.00178 * 1 2 3 27 27 H 1.09001 * 109.47119 * 60.00033 * 1 2 3 28 28 H 1.08996 * 109.47569 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46963 * 239.99359 * 2 1 3 30 30 H 1.09001 * 109.47119 * 119.99967 * 2 1 3 31 31 H 1.08007 * 120.03077 * 0.02562 * 5 4 3 32 32 H 1.08001 * 119.96984 * 180.27717 * 6 5 4 33 33 H 0.97000 * 119.99854 * 180.02562 * 15 14 12 34 34 H 1.09003 * 109.47233 * 216.17614 * 20 11 8 35 35 H 1.08990 * 109.47251 * 336.17764 * 20 11 8 36 36 H 0.96700 * 116.99791 * 180.02562 * 23 21 20 37 37 H 1.08002 * 119.97260 * 180.02562 * 24 7 6 38 38 H 1.07998 * 120.03288 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.1998 0.4259 0.0049 6 6 5.5690 0.6095 -0.0018 7 6 6.0963 1.8876 -0.0015 8 16 7.8431 2.1185 -0.0021 9 8 8.4043 0.9322 -0.5469 10 8 8.0769 3.4100 -0.5465 11 7 8.3296 2.1825 1.5795 12 6 8.6861 1.0333 2.2332 13 1 8.1916 0.1025 1.9978 14 6 9.6831 1.0647 3.1986 15 7 10.5904 2.0180 3.1768 16 14 9.7371 -0.2459 4.5285 17 1 10.5663 -1.3874 4.0652 18 1 10.3294 0.3267 5.7641 19 1 8.3587 -0.7190 4.8136 20 6 8.3786 3.4687 2.2792 21 6 7.1070 3.6622 3.0644 22 8 6.2476 2.8131 3.0414 23 8 6.9284 4.7782 3.7885 24 6 5.2551 2.9850 -0.0011 25 6 3.8852 2.8067 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.7884 -0.5728 0.0091 32 1 6.2281 -0.2461 -0.0021 33 1 11.2873 2.0398 3.8512 34 1 9.2306 3.4802 2.9591 35 1 8.4830 4.2740 1.5523 36 1 6.0968 4.8571 4.2755 37 1 5.6694 3.9824 -0.0012 38 1 3.2285 3.6641 0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586144930.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:05 Heat of formation + Delta-G solvation = -161.266454 kcal Electronic energy + Delta-G solvation = -26972.737175 eV Core-core repulsion = 22908.542944 eV Total energy + Delta-G solvation = -4064.194231 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.07916 -39.38467 -37.41393 -36.27982 -35.89881 -34.95771 -34.81499 -32.17848 -31.47938 -30.81343 -29.53739 -27.65705 -24.24208 -24.22513 -22.67741 -21.71828 -20.99197 -18.71704 -18.38442 -17.69762 -17.36351 -16.63042 -16.55147 -16.25224 -15.93754 -15.45620 -14.89157 -14.67991 -14.52477 -14.36314 -13.74852 -13.51139 -13.41410 -13.29599 -12.98890 -12.64527 -12.44430 -12.20736 -11.86563 -11.84839 -11.54549 -11.27826 -11.15658 -10.99705 -10.93256 -10.87913 -10.80715 -10.76214 -10.55855 -10.32535 -10.23500 -9.81073 -9.22489 -8.84710 -8.35559 -7.90992 -6.37404 -4.05774 1.15669 1.47887 1.54501 3.05179 3.05368 3.17766 3.25864 3.32776 3.59479 3.77608 4.17491 4.43824 4.65210 4.68765 4.69614 4.90562 4.93188 5.01693 5.02766 5.24172 5.30697 5.48565 5.52876 5.63371 5.78050 5.81442 6.00834 6.06656 6.11644 6.19418 6.38873 6.48059 6.67323 6.83993 7.07629 7.19462 7.37709 7.56054 8.26930 8.69881 8.85664 9.25324 10.66990 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.013623 B = 0.004603 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.798918 B = 6081.227358 C = 6255.580025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 O -0.316 6.316 4 C 0.170 3.830 5 C -0.231 4.231 6 C 0.028 3.972 7 C -0.684 4.684 8 S 2.661 3.339 9 O -0.960 6.960 10 O -0.992 6.992 11 N -0.824 5.824 12 C -0.290 4.290 13 H 0.094 0.906 14 C 0.039 3.961 15 N -0.865 5.865 16 Si 0.914 3.086 17 H -0.275 1.275 18 H -0.282 1.282 19 H -0.270 1.270 20 C 0.119 3.881 21 C 0.448 3.552 22 O -0.503 6.503 23 O -0.529 6.529 24 C 0.020 3.980 25 C -0.174 4.174 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.130 0.870 32 H 0.141 0.859 33 H 0.270 0.730 34 H 0.158 0.842 35 H 0.106 0.894 36 H 0.393 0.607 37 H 0.137 0.863 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.789 0.203 -1.990 13.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.230 6.230 4 C 0.124 3.876 5 C -0.250 4.250 6 C 0.009 3.991 7 C -0.769 4.769 8 S 2.756 3.244 9 O -0.951 6.951 10 O -0.982 6.982 11 N -0.654 5.654 12 C -0.423 4.423 13 H 0.112 0.888 14 C -0.167 4.167 15 N -0.505 5.505 16 Si 0.741 3.259 17 H -0.201 1.201 18 H -0.207 1.207 19 H -0.195 1.195 20 C -0.011 4.011 21 C 0.287 3.713 22 O -0.390 6.390 23 O -0.339 6.339 24 C 0.001 3.999 25 C -0.193 4.193 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.148 0.852 32 H 0.159 0.841 33 H 0.081 0.919 34 H 0.174 0.826 35 H 0.124 0.876 36 H 0.249 0.751 37 H 0.155 0.845 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.193 0.178 -2.952 13.521 hybrid contribution -1.251 -0.911 1.537 2.181 sum -14.444 -0.733 -1.415 14.532 Atomic orbital electron populations 1.21770 0.92735 1.02823 1.03469 1.22826 0.95813 0.81994 1.01781 1.86055 1.19327 1.29514 1.88091 1.19135 0.81811 0.94441 0.92220 1.21247 0.94441 0.97915 1.11443 1.20673 0.94627 0.95872 0.87970 1.31166 1.28110 0.99296 1.18355 1.03354 0.73639 0.73142 0.74230 1.93472 1.75478 1.48851 1.77259 1.93442 1.84685 1.41681 1.78427 1.52355 1.77347 1.10846 1.24842 1.19001 1.16876 0.87116 1.19285 0.88824 1.25260 0.93307 0.98060 1.00102 1.69863 1.12067 1.34220 1.34315 0.86131 0.78727 0.80768 0.80322 1.20054 1.20733 1.19450 1.21058 0.94413 0.87170 0.98484 1.25396 0.90473 0.77966 0.77432 1.90661 1.44264 1.42614 1.61417 1.84633 1.44948 1.43882 1.60478 1.20592 0.92150 0.97857 0.89288 1.20382 0.95165 0.94684 1.09082 0.91514 0.91566 0.90359 0.91829 0.91713 0.85178 0.84141 0.91936 0.82608 0.87594 0.75057 0.84528 0.85034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.76 16 2 C 0.05 0.52 5.46 37.16 0.20 0.72 16 3 O -0.32 -4.37 10.14 -19.42 -0.20 -4.56 16 4 C 0.17 2.69 6.69 -39.22 -0.26 2.43 16 5 C -0.23 -3.66 9.04 -39.43 -0.36 -4.02 16 6 C 0.03 0.51 9.51 -39.61 -0.38 0.13 16 7 C -0.68 -13.61 5.79 -39.56 -0.23 -13.84 16 8 S 2.66 60.53 5.65 -107.50 -0.61 59.92 16 9 O -0.96 -23.97 16.49 -57.17 -0.94 -24.92 16 10 O -0.99 -22.99 15.82 -57.17 -0.90 -23.90 16 11 N -0.82 -19.74 2.39 -61.09 -0.15 -19.89 16 12 C -0.29 -7.43 8.71 -15.06 -0.13 -7.57 16 13 H 0.09 2.36 7.93 -52.48 -0.42 1.95 16 14 C 0.04 0.98 4.99 -17.43 -0.09 0.89 16 15 N -0.87 -22.20 11.26 55.49 0.62 -21.58 16 16 Si 0.91 20.00 29.62 -169.99 -5.03 14.96 16 17 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 20 C 0.12 2.59 5.89 -5.19 -0.03 2.56 16 21 C 0.45 9.00 8.36 36.00 0.30 9.30 16 22 O -0.50 -11.10 16.80 -18.75 -0.32 -11.42 16 23 O -0.53 -8.55 13.42 -39.26 -0.53 -9.08 16 24 C 0.02 0.37 9.44 -39.60 -0.37 -0.01 16 25 C -0.17 -2.81 9.99 -39.43 -0.39 -3.21 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.58 7.67 -51.93 -0.40 0.18 16 30 H 0.06 0.63 7.65 -51.93 -0.40 0.23 16 31 H 0.13 1.65 6.30 -52.48 -0.33 1.32 16 32 H 0.14 2.48 7.61 -52.49 -0.40 2.08 16 33 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 34 H 0.16 3.64 5.31 -51.93 -0.28 3.36 16 35 H 0.11 2.13 6.89 -51.93 -0.36 1.77 16 36 H 0.39 4.51 9.10 45.56 0.41 4.92 16 37 H 0.14 2.27 7.61 -52.49 -0.40 1.87 16 38 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 343.94 15.07 5.18 5.18 Total: -1.00 -32.36 343.94 -7.61 -39.97 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -3.39 Total: 8.67 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -1.36 Total: -13.36 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.48 Total: -41.46 kcal Atomic # 8 Polarization: -70.99 SS G_CDS: -2.89 Total: -73.88 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.96 kcal Atomic # 16 Polarization: 60.53 SS G_CDS: -0.61 Total: 59.92 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.36 -7.61 -39.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586144930.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.301 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds