Wall clock time and date at job start Tue Mar 31 2020 04:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 119.99817 * 2 1 4 4 C 1.53007 * 109.47284 * 270.00134 * 3 2 1 5 5 H 1.08998 * 109.46674 * 59.99635 * 4 3 2 6 6 O 1.42898 * 109.46891 * 300.00068 * 4 3 2 7 7 C 1.52997 * 109.47128 * 180.02562 * 4 3 2 8 8 N 1.46908 * 109.46719 * 184.99648 * 7 4 3 9 9 C 1.47024 * 110.99261 * 66.32173 * 8 7 4 10 10 C 1.53103 * 109.24985 * 182.34870 * 9 8 7 11 11 O 1.43012 * 109.29295 * 303.21723 * 10 9 8 12 12 C 1.43011 * 113.74271 * 58.65008 * 11 10 9 13 13 C 1.47018 * 110.99661 * 189.99712 * 8 7 4 14 14 C 1.34774 * 120.00102 * 180.02562 * 2 1 3 15 15 O 1.21279 * 120.00070 * 179.97438 * 14 2 1 16 16 C 1.50702 * 120.00037 * 359.97438 * 14 2 1 17 17 C 1.53008 * 109.46863 * 179.97438 * 16 14 2 18 18 C 1.53005 * 109.46747 * 180.02562 * 17 16 14 19 19 C 1.52994 * 109.46765 * 180.02562 * 18 17 16 20 20 C 1.50702 * 109.46882 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99980 * 0.02562 * 20 19 18 22 22 C 1.37881 * 120.00046 * 179.97438 * 20 19 18 23 23 N 1.31521 * 119.99862 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00303 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47122 * 89.99901 * 24 22 20 26 26 H 1.48497 * 109.47167 * 210.00192 * 24 22 20 27 27 H 1.48503 * 109.46680 * 330.00354 * 24 22 20 28 28 H 1.09000 * 109.47356 * 90.00450 * 1 2 3 29 29 H 1.09008 * 109.47279 * 209.99622 * 1 2 3 30 30 H 1.08996 * 109.47615 * 329.99693 * 1 2 3 31 31 H 1.08998 * 109.47133 * 149.99994 * 3 2 1 32 32 H 1.09006 * 109.47406 * 29.99635 * 3 2 1 33 33 H 0.96701 * 113.99894 * 300.00253 * 6 4 3 34 34 H 1.09001 * 109.47059 * 65.00273 * 7 4 3 35 35 H 1.08995 * 109.46804 * 304.99511 * 7 4 3 36 36 H 1.08998 * 109.47369 * 62.43595 * 9 8 7 37 37 H 1.08998 * 109.54483 * 302.29802 * 9 8 7 38 38 H 1.09002 * 109.50635 * 183.25881 * 10 9 8 39 39 H 1.09003 * 109.50698 * 63.17493 * 10 9 8 40 40 H 1.08997 * 109.50806 * 61.26171 * 12 11 10 41 41 H 1.08997 * 109.50924 * 181.35636 * 12 11 10 42 42 H 1.08994 * 109.50209 * 57.67478 * 13 8 7 43 43 H 1.08997 * 109.50514 * 297.54292 * 13 8 7 44 44 H 1.08998 * 109.47315 * 300.00161 * 16 14 2 45 45 H 1.09002 * 109.47058 * 60.00609 * 16 14 2 46 46 H 1.08998 * 109.47318 * 300.00199 * 17 16 14 47 47 H 1.09002 * 109.46754 * 60.00462 * 17 16 14 48 48 H 1.09003 * 109.46869 * 300.00116 * 18 17 16 49 49 H 1.08996 * 109.46966 * 60.00254 * 18 17 16 50 50 H 1.08998 * 109.47198 * 300.00050 * 19 18 17 51 51 H 1.09004 * 109.47583 * 60.00182 * 19 18 17 52 52 H 0.97003 * 119.99739 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7105 -1.4426 5 1 1.4999 1.8407 -1.9563 6 8 3.2247 0.7146 -2.1162 7 6 3.2179 3.0352 -1.4425 8 7 3.3582 3.5196 -2.8223 9 6 2.0503 3.8779 -3.3903 10 6 2.2356 4.3205 -4.8442 11 8 3.1639 5.4073 -4.8926 12 6 4.4483 5.0921 -4.3483 13 6 4.2857 4.6583 -2.8891 14 6 2.1388 -1.1672 -0.0005 15 8 3.3516 -1.1672 -0.0010 16 6 1.3854 -2.4723 -0.0005 17 6 2.3797 -3.6352 -0.0018 18 6 1.6147 -4.9603 -0.0025 19 6 2.6090 -6.1231 -0.0031 20 6 1.8555 -7.4282 -0.0031 21 1 0.7755 -7.4282 -0.0031 22 6 2.5449 -8.6223 -0.0042 23 7 3.8601 -8.6222 -0.0047 24 14 1.6111 -10.2401 -0.0049 25 1 1.3630 -10.6678 -1.4051 26 1 2.4139 -11.2754 0.6942 27 1 0.3137 -10.0629 0.6957 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3634 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 3.1498 1.1384 0.5138 32 1 1.6083 2.0284 0.5138 33 1 4.0872 0.5461 -1.7126 34 1 4.2062 2.8837 -1.0084 35 1 2.6708 3.7708 -0.8530 36 1 1.6151 4.6942 -2.8139 37 1 1.3881 3.0129 -3.3549 38 1 1.2771 4.6421 -5.2517 39 1 2.6199 3.4871 -5.4323 40 1 4.8973 4.2809 -4.9213 41 1 5.0904 5.9715 -4.3977 42 1 5.2547 4.3624 -2.4871 43 1 3.8865 5.4876 -2.3051 44 1 0.7590 -2.5303 0.8896 45 1 0.7584 -2.5299 -0.8903 46 1 3.0057 -3.5770 -0.8922 47 1 3.0070 -3.5778 0.8878 48 1 0.9884 -5.0186 0.8878 49 1 0.9877 -5.0174 -0.8922 50 1 3.2356 -6.0649 -0.8931 51 1 3.2357 -6.0658 0.8869 52 1 4.3452 -9.4623 -0.0051 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588660307.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:10 Heat of formation + Delta-G solvation = -140.457569 kcal Electronic energy + Delta-G solvation = -28380.438161 eV Core-core repulsion = 24379.611345 eV Total energy + Delta-G solvation = -4000.826815 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.30997 -39.79254 -37.77966 -35.76878 -35.15786 -34.83490 -32.60706 -31.68489 -31.10582 -29.70696 -28.23128 -26.77440 -25.79457 -24.55028 -24.31235 -22.28542 -21.60478 -20.81491 -19.98021 -19.13047 -17.40666 -16.97354 -16.66601 -16.41489 -16.23138 -16.10510 -15.89623 -15.58152 -15.50931 -15.16656 -14.80795 -14.42574 -14.28408 -14.20910 -13.57328 -13.30009 -13.14767 -12.90345 -12.68372 -12.56326 -12.43862 -12.17137 -11.98895 -11.88931 -11.78713 -11.59056 -11.50438 -11.20246 -11.00053 -10.95373 -10.49624 -10.48083 -10.45808 -10.35794 -10.06322 -9.70346 -9.56825 -9.18180 -8.94629 -8.82388 -8.70169 -8.27624 -5.92490 -3.94820 2.70509 2.87208 3.26135 3.35870 3.41717 3.44914 3.45700 4.22444 4.28072 4.43284 4.49451 4.50917 4.57944 4.66553 4.70947 4.78377 4.80224 4.86738 4.91427 4.99235 5.09332 5.16172 5.17281 5.20754 5.28074 5.32353 5.36854 5.40128 5.42232 5.42717 5.48075 5.52781 5.71706 5.91325 6.19194 6.26140 6.37006 6.46466 6.48075 6.60053 6.70538 6.89181 7.06257 7.22867 7.30720 7.65019 7.77402 7.94000 8.09313 8.27490 8.51135 9.12902 9.68553 11.18809 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.022340 B = 0.001776 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.078730 B =15764.246586 C =16176.668923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.620 5.620 3 C 0.083 3.917 4 C 0.098 3.902 5 H 0.094 0.906 6 O -0.538 6.538 7 C 0.025 3.975 8 N -0.525 5.525 9 C 0.016 3.984 10 C 0.064 3.936 11 O -0.388 6.388 12 C 0.063 3.937 13 C 0.018 3.982 14 C 0.522 3.478 15 O -0.532 6.532 16 C -0.136 4.136 17 C -0.102 4.102 18 C -0.110 4.110 19 C 0.020 3.980 20 C -0.520 4.520 21 H 0.054 0.946 22 C 0.054 3.946 23 N -0.895 5.895 24 Si 0.891 3.109 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.275 1.275 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.378 0.622 34 H 0.082 0.918 35 H 0.042 0.958 36 H 0.040 0.960 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.041 0.959 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.045 0.955 49 H 0.046 0.954 50 H 0.016 0.984 51 H 0.015 0.985 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.332 32.383 -3.577 33.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.354 5.354 3 C -0.041 4.041 4 C 0.036 3.964 5 H 0.112 0.888 6 O -0.343 6.343 7 C -0.104 4.104 8 N -0.250 5.250 9 C -0.112 4.112 10 C -0.013 4.013 11 O -0.306 6.306 12 C -0.014 4.014 13 C -0.111 4.111 14 C 0.312 3.688 15 O -0.408 6.408 16 C -0.176 4.176 17 C -0.140 4.140 18 C -0.148 4.148 19 C -0.017 4.017 20 C -0.558 4.558 21 H 0.072 0.928 22 C -0.146 4.146 23 N -0.535 5.535 24 Si 0.719 3.281 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.200 1.200 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.227 0.773 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.116 0.884 42 H 0.105 0.895 43 H 0.059 0.941 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.064 0.936 49 H 0.065 0.935 50 H 0.034 0.966 51 H 0.034 0.966 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.896 32.036 -4.313 32.694 hybrid contribution -0.430 -0.385 1.080 1.225 sum -5.326 31.651 -3.233 32.258 Atomic orbital electron populations 1.21811 0.79505 1.03244 1.01922 1.47757 1.06771 1.05612 1.75278 1.22111 0.98844 0.86005 0.97166 1.22271 0.95030 0.86521 0.92572 0.88777 1.86589 1.33448 1.58295 1.56017 1.22840 1.01601 0.96989 0.88980 1.62092 1.10411 1.32997 1.19526 1.22847 0.91459 1.00314 0.96590 1.22665 0.93579 0.90093 0.95010 1.87978 1.22845 1.37457 1.82327 1.22663 0.85354 1.01131 0.92209 1.22806 0.97826 0.92222 0.98196 1.20989 0.88184 0.85233 0.74434 1.90635 1.14192 1.87204 1.48735 1.21807 1.00086 0.92130 1.03581 1.21449 0.97015 0.92673 1.02888 1.21647 0.99070 0.94080 0.99981 1.19095 0.94069 0.91264 0.97304 1.21290 0.92973 0.91221 1.50307 0.92775 1.25049 0.94849 0.99217 0.95513 1.69980 1.06028 1.26461 1.50988 0.86610 0.79803 0.83621 0.78035 1.20720 1.21275 1.19953 0.92641 0.90426 0.91437 0.89512 0.90242 0.77347 0.89933 0.93938 0.94138 0.89312 0.88429 0.91926 0.92004 0.88441 0.89503 0.94101 0.89425 0.89246 0.91736 0.91943 0.93584 0.93508 0.96569 0.96616 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 10.28 59.84 0.62 1.16 16 2 N -0.62 -6.32 2.83 -181.57 -0.51 -6.84 16 3 C 0.08 0.69 5.19 -4.04 -0.02 0.67 16 4 C 0.10 0.83 3.20 -26.73 -0.09 0.74 16 5 H 0.09 0.80 6.30 -51.93 -0.33 0.47 16 6 O -0.54 -6.56 12.09 -44.03 -0.53 -7.09 16 7 C 0.02 0.17 4.59 -3.82 -0.02 0.16 16 8 N -0.53 -4.22 4.67 -234.29 -1.09 -5.32 16 9 C 0.02 0.12 5.44 -3.70 -0.02 0.10 16 10 C 0.06 0.47 7.01 37.21 0.26 0.74 16 11 O -0.39 -3.49 10.83 -35.23 -0.38 -3.87 16 12 C 0.06 0.45 7.01 37.21 0.26 0.71 16 13 C 0.02 0.12 5.65 -3.71 -0.02 0.10 16 14 C 0.52 7.32 7.18 -10.99 -0.08 7.24 16 15 O -0.53 -9.18 14.35 -3.24 -0.05 -9.23 16 16 C -0.14 -1.88 4.25 -27.88 -0.12 -2.00 16 17 C -0.10 -1.87 4.50 -26.72 -0.12 -1.99 16 18 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 19 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 20 C -0.52 -15.14 9.11 -34.44 -0.31 -15.46 16 21 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 22 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 23 N -0.90 -27.75 13.29 55.43 0.74 -27.01 16 24 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.51 6.44 -51.92 -0.33 0.18 16 30 H 0.07 0.32 7.89 -51.93 -0.41 -0.09 16 31 H 0.09 0.84 7.42 -51.93 -0.39 0.45 16 32 H 0.08 0.46 7.89 -51.93 -0.41 0.05 16 33 H 0.38 4.42 8.45 45.56 0.38 4.81 16 34 H 0.08 0.56 8.04 -51.93 -0.42 0.15 16 35 H 0.04 0.25 8.12 -51.93 -0.42 -0.17 16 36 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.09 0.63 6.29 -51.93 -0.33 0.31 16 38 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.52 8.09 -51.93 -0.42 0.10 16 43 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.09 1.04 7.40 -51.93 -0.38 0.66 16 45 H 0.09 1.12 8.11 -51.93 -0.42 0.70 16 46 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 47 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 48 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 50 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 52 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 410.18 15.07 6.18 6.18 Total: -1.00 -35.52 410.18 -9.61 -45.13 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -8.91 Total: -0.64 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -0.03 Total: -8.38 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: -0.87 Total: -39.17 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.96 Total: -20.19 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.52 -9.61 -45.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588660307.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.331 kcal (2) G-P(sol) polarization free energy of solvation -35.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds