Wall clock time and date at job start Tue Mar 31 2020 04:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46493 * 120.00355 * 2 1 4 4 C 1.53007 * 109.47139 * 270.00246 * 3 2 1 5 5 H 1.09009 * 109.46359 * 304.99556 * 4 3 2 6 6 O 1.42897 * 109.47057 * 64.99407 * 4 3 2 7 7 C 1.52999 * 109.46950 * 184.99942 * 4 3 2 8 8 N 1.46905 * 109.46778 * 176.97735 * 7 4 3 9 9 C 1.47016 * 110.99717 * 160.56926 * 8 7 4 10 10 C 1.53100 * 109.25640 * 182.35253 * 9 8 7 11 11 O 1.43015 * 109.29012 * 303.21663 * 10 9 8 12 12 C 1.43019 * 113.74123 * 58.64926 * 11 10 9 13 13 C 1.47017 * 110.99960 * 284.24709 * 8 7 4 14 14 C 1.34781 * 119.99592 * 179.97438 * 2 1 3 15 15 O 1.21284 * 119.99685 * 179.97438 * 14 2 1 16 16 C 1.50691 * 120.00312 * 0.02562 * 14 2 1 17 17 C 1.53007 * 109.47499 * 179.97438 * 16 14 2 18 18 C 1.52994 * 109.47508 * 180.02562 * 17 16 14 19 19 C 1.53001 * 109.47350 * 180.02562 * 18 17 16 20 20 C 1.50691 * 109.47341 * 179.97438 * 19 18 17 21 21 H 1.08004 * 119.99851 * 359.97438 * 20 19 18 22 22 C 1.37881 * 120.00240 * 179.97438 * 20 19 18 23 23 N 1.31513 * 120.00036 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99732 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47058 * 89.99747 * 24 22 20 26 26 H 1.48497 * 109.46862 * 209.99843 * 24 22 20 27 27 H 1.48496 * 109.47279 * 330.00102 * 24 22 20 28 28 H 1.08998 * 109.46886 * 90.00153 * 1 2 3 29 29 H 1.09005 * 109.47192 * 209.99968 * 1 2 3 30 30 H 1.08997 * 109.46927 * 330.00401 * 1 2 3 31 31 H 1.09000 * 109.47746 * 149.99858 * 3 2 1 32 32 H 1.09004 * 109.47193 * 29.99774 * 3 2 1 33 33 H 0.96696 * 113.99871 * 60.00671 * 6 4 3 34 34 H 1.08999 * 109.47300 * 56.97869 * 7 4 3 35 35 H 1.08994 * 109.47079 * 296.97403 * 7 4 3 36 36 H 1.08997 * 109.47067 * 62.43657 * 9 8 7 37 37 H 1.09009 * 109.54426 * 302.30515 * 9 8 7 38 38 H 1.08996 * 109.50655 * 183.26289 * 10 9 8 39 39 H 1.08998 * 109.50666 * 63.16837 * 10 9 8 40 40 H 1.08998 * 109.50163 * 61.26150 * 12 11 10 41 41 H 1.08997 * 109.50388 * 181.35461 * 12 11 10 42 42 H 1.09002 * 109.50242 * 57.67697 * 13 8 7 43 43 H 1.08990 * 109.50613 * 297.54667 * 13 8 7 44 44 H 1.08998 * 109.47191 * 299.99766 * 16 14 2 45 45 H 1.09001 * 109.47754 * 60.00063 * 16 14 2 46 46 H 1.08998 * 109.46841 * 300.00142 * 17 16 14 47 47 H 1.09003 * 109.46499 * 59.99960 * 17 16 14 48 48 H 1.09004 * 109.46695 * 299.99888 * 18 17 16 49 49 H 1.08998 * 109.47115 * 60.00009 * 18 17 16 50 50 H 1.08998 * 109.46690 * 299.99881 * 19 18 17 51 51 H 1.08996 * 109.47167 * 59.99258 * 19 18 17 52 52 H 0.97000 * 119.99790 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4525 1.7103 -1.4426 5 1 2.9643 0.9129 -1.9815 6 8 1.2061 1.9934 -2.0814 7 6 3.3239 2.9680 -1.4443 8 7 3.6287 3.3504 -2.8296 9 6 4.0498 4.7569 -2.9073 10 6 4.3002 5.1288 -4.3712 11 8 5.2742 4.2398 -4.9245 12 6 4.8954 2.8620 -4.8660 13 6 4.6520 2.4668 -3.4071 14 6 2.1388 -1.1673 0.0005 15 8 3.3517 -1.1673 0.0001 16 6 1.3854 -2.4723 0.0005 17 6 2.3796 -3.6354 0.0005 18 6 1.6146 -4.9603 -0.0001 19 6 2.6087 -6.1233 0.0005 20 6 1.8553 -7.4283 0.0005 21 1 0.7752 -7.4283 0.0005 22 6 2.5446 -8.6224 0.0005 23 7 1.8870 -9.7613 0.0010 24 14 4.4126 -8.6225 0.0012 25 1 4.9071 -8.6227 1.4015 26 1 4.9078 -9.8348 -0.6988 27 1 4.9079 -7.4098 -0.6983 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 3.1500 1.1383 0.5138 32 1 1.6085 2.0284 0.5138 33 1 0.6956 2.6948 -1.6543 34 1 4.2525 2.7674 -0.9101 35 1 2.7898 3.7807 -0.9522 36 1 4.9672 4.8936 -2.3349 37 1 3.2663 5.3951 -2.4985 38 1 4.6681 6.1532 -4.4286 39 1 3.3697 5.0442 -4.9325 40 1 3.9819 2.7110 -5.4413 41 1 5.6934 2.2471 -5.2820 42 1 4.3078 1.4335 -3.3625 43 1 5.5794 2.5668 -2.8433 44 1 0.7584 -2.5299 0.8903 45 1 0.7590 -2.5303 -0.8897 46 1 3.0062 -3.5776 -0.8894 47 1 3.0062 -3.5776 0.8906 48 1 0.9876 -5.0182 0.8897 49 1 0.9882 -5.0178 -0.8903 50 1 3.2360 -6.0655 -0.8890 51 1 3.2348 -6.0656 0.8909 52 1 2.3720 -10.6014 0.0007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588660311.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:12 Heat of formation + Delta-G solvation = -138.517808 kcal Electronic energy + Delta-G solvation = -28405.021857 eV Core-core repulsion = 24404.279156 eV Total energy + Delta-G solvation = -4000.742701 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.34884 -39.84165 -37.98750 -35.86471 -35.19435 -35.00547 -32.61175 -31.68359 -31.28920 -30.06604 -28.32443 -26.77718 -25.99547 -24.55339 -24.36824 -22.21626 -21.62456 -20.84144 -20.02325 -19.17871 -17.41639 -17.11584 -16.68463 -16.53929 -16.45913 -16.37218 -15.94705 -15.66015 -15.47615 -15.27384 -14.86782 -14.39604 -14.26645 -14.14212 -13.68523 -13.43977 -13.15538 -12.96788 -12.76324 -12.60276 -12.40909 -12.36599 -12.18747 -11.90880 -11.82696 -11.78804 -11.71364 -11.29240 -11.10200 -11.00827 -10.72549 -10.71334 -10.51987 -10.09154 -9.93338 -9.79767 -9.63347 -9.40674 -9.10608 -8.88230 -8.72847 -8.48270 -5.99458 -3.96764 2.58636 2.77104 3.24086 3.35969 3.42954 3.46666 3.49154 4.07810 4.23805 4.42439 4.49655 4.49931 4.51046 4.64010 4.71643 4.73509 4.79277 4.86866 4.91290 4.93986 5.08831 5.11125 5.17363 5.20875 5.24187 5.31437 5.32905 5.35073 5.39904 5.43491 5.51363 5.54660 5.65089 5.80833 6.04568 6.14580 6.24833 6.42133 6.44787 6.46586 6.69744 6.71696 6.82911 7.00367 7.19105 7.36568 7.39571 7.52375 7.86012 8.12917 8.59601 9.05600 9.63955 11.14021 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.015819 B = 0.002023 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.553032 B =13836.154920 C =15042.187953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.616 5.616 3 C 0.085 3.915 4 C 0.099 3.901 5 H 0.102 0.898 6 O -0.541 6.541 7 C 0.025 3.975 8 N -0.525 5.525 9 C 0.018 3.982 10 C 0.064 3.936 11 O -0.387 6.387 12 C 0.064 3.936 13 C 0.016 3.984 14 C 0.514 3.486 15 O -0.539 6.539 16 C -0.137 4.137 17 C -0.106 4.106 18 C -0.102 4.102 19 C -0.015 4.015 20 C -0.519 4.519 21 H 0.071 0.929 22 C 0.064 3.936 23 N -0.906 5.906 24 Si 0.880 3.120 25 H -0.278 1.278 26 H -0.288 1.288 27 H -0.265 1.265 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.366 0.634 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.041 0.959 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.043 0.957 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.052 0.948 49 H 0.053 0.947 50 H 0.015 0.985 51 H 0.011 0.989 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.745 35.093 -3.655 35.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.350 5.350 3 C -0.039 4.039 4 C 0.038 3.962 5 H 0.120 0.880 6 O -0.345 6.345 7 C -0.104 4.104 8 N -0.250 5.250 9 C -0.111 4.111 10 C -0.013 4.013 11 O -0.305 6.305 12 C -0.013 4.013 13 C -0.113 4.113 14 C 0.303 3.697 15 O -0.415 6.415 16 C -0.177 4.177 17 C -0.144 4.144 18 C -0.140 4.140 19 C -0.053 4.053 20 C -0.557 4.557 21 H 0.089 0.911 22 C -0.137 4.137 23 N -0.545 5.545 24 Si 0.707 3.293 25 H -0.203 1.203 26 H -0.215 1.215 27 H -0.189 1.189 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.212 0.788 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.117 0.883 42 H 0.107 0.893 43 H 0.062 0.938 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.071 0.929 49 H 0.072 0.928 50 H 0.034 0.966 51 H 0.029 0.971 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.125 34.423 -4.411 34.705 hybrid contribution 1.168 0.338 1.141 1.667 sum 1.043 34.761 -3.270 34.930 Atomic orbital electron populations 1.21827 0.78979 1.02898 1.02463 1.47774 1.07211 1.05393 1.74629 1.22095 0.98841 0.85993 0.97002 1.22327 0.84955 0.95836 0.93045 0.88040 1.86676 1.31780 1.59201 1.56827 1.22806 0.99805 0.98586 0.89229 1.62103 1.42043 1.02257 1.18638 1.22816 0.99958 0.90026 0.98256 1.22647 0.92882 0.93766 0.92026 1.87991 1.44259 1.16610 1.81678 1.22675 1.01238 0.82426 0.94929 1.22859 0.93601 0.98323 0.96467 1.21126 0.88189 0.85546 0.74812 1.90683 1.14214 1.87409 1.49222 1.21800 1.00019 0.91793 1.04052 1.21490 0.97153 0.92961 1.02798 1.21475 0.98651 0.92954 1.00929 1.19574 0.95319 0.94095 0.96289 1.21185 0.95031 0.89013 1.50455 0.91105 1.25048 0.98402 0.95566 0.94645 1.69922 1.35704 0.97384 1.51504 0.86770 0.86356 0.77642 0.78509 1.20344 1.21459 1.18911 0.91831 0.90738 0.91531 0.89166 0.90397 0.78822 0.93288 0.90337 0.94057 0.89665 0.88522 0.92137 0.91993 0.88252 0.89277 0.93827 0.89031 0.88930 0.91859 0.91882 0.92890 0.92813 0.96631 0.97091 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.55 9.89 59.85 0.59 1.14 16 2 N -0.62 -6.05 2.84 -181.57 -0.52 -6.56 16 3 C 0.08 0.68 5.11 -4.04 -0.02 0.66 16 4 C 0.10 0.82 3.29 -26.73 -0.09 0.73 16 5 H 0.10 1.17 6.80 -51.92 -0.35 0.81 16 6 O -0.54 -4.41 12.81 -35.23 -0.45 -4.86 16 7 C 0.02 0.17 4.65 -3.82 -0.02 0.15 16 8 N -0.53 -4.15 4.58 -234.30 -1.07 -5.22 16 9 C 0.02 0.11 5.60 -3.71 -0.02 0.09 16 10 C 0.06 0.44 7.01 37.21 0.26 0.70 16 11 O -0.39 -3.64 10.83 -35.23 -0.38 -4.02 16 12 C 0.06 0.53 7.01 37.21 0.26 0.79 16 13 C 0.02 0.13 5.47 -3.71 -0.02 0.11 16 14 C 0.51 6.95 7.67 -10.99 -0.08 6.86 16 15 O -0.54 -9.24 15.56 5.55 0.09 -9.16 16 16 C -0.14 -1.78 4.25 -27.88 -0.12 -1.90 16 17 C -0.11 -1.81 4.50 -26.73 -0.12 -1.93 16 18 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16 19 C -0.02 -0.38 4.04 -27.89 -0.11 -0.49 16 20 C -0.52 -15.18 9.66 -34.44 -0.33 -15.52 16 21 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 22 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 23 N -0.91 -28.50 13.96 55.43 0.77 -27.72 16 24 Si 0.88 22.50 27.47 -169.99 -4.67 17.83 16 25 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.48 6.44 -51.93 -0.33 0.14 16 30 H 0.07 0.30 7.89 -51.93 -0.41 -0.11 16 31 H 0.09 0.86 7.42 -51.93 -0.39 0.48 16 32 H 0.08 0.39 7.89 -51.93 -0.41 -0.02 16 33 H 0.37 1.61 9.04 45.56 0.41 2.02 16 34 H 0.05 0.36 7.99 -51.93 -0.41 -0.05 16 35 H 0.08 0.38 7.86 -51.93 -0.41 -0.03 16 36 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.09 0.41 8.02 -51.92 -0.42 0.00 16 38 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 0.83 6.77 -51.93 -0.35 0.48 16 43 H 0.04 0.39 8.13 -51.93 -0.42 -0.03 16 44 H 0.09 1.02 7.40 -51.93 -0.38 0.64 16 45 H 0.09 1.08 8.11 -51.93 -0.42 0.66 16 46 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 47 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 48 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 50 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 51 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 52 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 409.74 15.07 6.17 6.17 Total: -1.00 -36.16 409.74 -8.99 -45.15 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -8.88 Total: -2.64 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: -0.06 Total: -8.95 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: -0.81 Total: -39.51 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.75 Total: -18.04 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.67 Total: 17.83 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.16 -8.99 -45.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588660311.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.373 kcal (2) G-P(sol) polarization free energy of solvation -36.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds