Wall clock time and date at job start Tue Mar 31 2020 04:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.46986 * 300.00240 * 5 3 2 7 7 C 1.53005 * 109.47219 * 180.02562 * 6 5 3 8 8 C 1.52994 * 109.46906 * 59.99762 * 7 6 5 9 9 N 1.46895 * 109.47341 * 60.00474 * 8 7 6 10 10 C 1.46896 * 111.00211 * 84.99840 * 9 8 7 11 11 C 1.53001 * 109.46890 * 180.02562 * 10 9 8 12 12 H 1.08999 * 109.47582 * 304.99559 * 11 10 9 13 13 O 1.42897 * 109.47321 * 64.99855 * 11 10 9 14 14 C 1.53002 * 109.46879 * 184.99861 * 11 10 9 15 15 N 1.46900 * 109.47225 * 179.97438 * 14 11 10 16 16 C 1.46901 * 110.99870 * 293.95186 * 15 14 11 17 17 C 1.46897 * 110.99948 * 170.00049 * 15 14 11 18 18 C 1.50709 * 109.46941 * 189.99770 * 17 15 14 19 19 H 1.07997 * 119.99966 * 0.02562 * 18 17 15 20 20 C 1.37877 * 119.99586 * 179.97438 * 18 17 15 21 21 N 1.31521 * 119.99480 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00557 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.46969 * 89.99540 * 22 20 18 24 24 H 1.48499 * 109.47429 * 210.00039 * 22 20 18 25 25 H 1.48499 * 109.46921 * 329.99967 * 22 20 18 26 26 C 1.52998 * 109.47366 * 299.99803 * 8 7 6 27 27 C 1.52992 * 109.47257 * 180.02562 * 5 3 2 28 28 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 30 30 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 31 31 H 1.08997 * 109.47392 * 59.99712 * 5 3 2 32 32 H 1.09005 * 109.46932 * 299.99942 * 6 5 3 33 33 H 1.08998 * 109.47453 * 59.99968 * 6 5 3 34 34 H 1.09000 * 109.46608 * 299.99989 * 7 6 5 35 35 H 1.08999 * 109.46783 * 179.97438 * 7 6 5 36 36 H 1.09005 * 109.46734 * 180.02562 * 8 7 6 37 37 H 1.00909 * 110.99847 * 208.95392 * 9 8 7 38 38 H 1.08995 * 109.47053 * 299.99923 * 10 9 8 39 39 H 1.08994 * 109.47319 * 60.00203 * 10 9 8 40 40 H 0.96704 * 113.99671 * 60.00183 * 13 11 10 41 41 H 1.09002 * 109.47151 * 299.99837 * 14 11 10 42 42 H 1.09000 * 109.47456 * 59.99948 * 14 11 10 43 43 H 1.09002 * 109.46956 * 60.00559 * 16 15 14 44 44 H 1.08999 * 109.46836 * 179.97438 * 16 15 14 45 45 H 1.08996 * 109.47501 * 300.00318 * 16 15 14 46 46 H 1.08992 * 109.47271 * 309.99812 * 17 15 14 47 47 H 1.09004 * 109.47402 * 70.00138 * 17 15 14 48 48 H 0.97001 * 119.99459 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.47603 * 300.00663 * 26 8 7 50 50 H 1.08998 * 109.47444 * 180.02562 * 26 8 7 51 51 H 1.09004 * 109.47330 * 299.99977 * 27 5 3 52 52 H 1.09005 * 109.47124 * 59.99773 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1128 0.5816 1.2502 7 6 5.6408 0.6622 1.2512 8 6 6.0740 2.1295 1.2514 9 7 5.5478 2.7953 2.4504 10 6 6.4425 2.5965 3.5984 11 6 5.8621 3.3022 4.8256 12 1 5.6832 4.3514 4.5907 13 8 4.6297 2.6798 5.1945 14 6 6.8522 3.2014 5.9877 15 7 6.2952 3.8794 7.1658 16 6 6.1751 5.3250 6.9334 17 6 7.1018 3.6038 8.3621 18 6 6.3753 4.1043 9.5840 19 1 5.4107 4.5791 9.4820 20 6 6.9417 3.9549 10.8322 21 7 6.3075 4.3912 11.8986 22 14 8.6098 3.1329 11.0087 23 1 9.6793 4.1593 10.9196 24 1 8.6881 2.4494 12.3247 25 1 8.7882 2.1366 9.9221 26 6 5.5275 2.8229 0.0018 27 6 4.0001 2.7421 0.0011 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.9564 0.7806 -0.8891 32 1 3.7227 1.0759 2.1399 33 1 3.8038 -0.4637 1.2503 34 1 6.0312 0.1682 0.3614 35 1 6.0300 0.1686 2.1416 36 1 7.1625 2.1870 1.2516 37 1 5.3916 3.7775 2.2796 38 1 6.5381 1.5304 3.8041 39 1 7.4240 3.0119 3.3703 40 1 4.7137 1.7426 5.4174 41 1 7.0311 2.1521 6.2227 42 1 7.7922 3.6761 5.7063 43 1 5.5160 5.5028 6.0837 44 1 5.7599 5.8023 7.8210 45 1 7.1598 5.7423 6.7230 46 1 7.2650 2.5299 8.4509 47 1 8.0627 4.1115 8.2775 48 1 6.7061 4.2864 12.7766 49 1 5.9179 2.3289 -0.8880 50 1 5.8365 3.8681 0.0017 51 1 3.6107 3.2365 -0.8889 52 1 3.6100 3.2360 0.8911 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591736412.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:19 Heat of formation + Delta-G solvation = -140.447244 kcal Electronic energy + Delta-G solvation = -28968.395145 eV Core-core repulsion = 24967.568777 eV Total energy + Delta-G solvation = -4000.826368 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.95776 -39.24495 -37.95881 -36.70255 -35.67392 -34.29018 -32.44838 -31.26883 -30.85990 -29.18056 -27.93471 -27.47069 -25.73957 -23.87543 -23.38887 -22.85115 -21.16311 -20.88393 -20.14186 -19.36130 -17.79440 -17.03673 -16.93701 -16.67324 -16.40481 -16.02500 -15.34753 -15.24417 -14.89809 -14.67041 -14.26234 -14.20007 -13.94171 -13.71980 -13.62782 -13.17798 -13.06853 -12.76541 -12.64209 -12.52675 -12.35799 -12.20967 -12.13868 -11.95658 -11.59448 -11.35594 -11.30457 -11.19791 -11.06074 -10.97787 -10.77541 -10.70662 -10.68784 -10.48942 -10.31833 -10.22053 -9.89883 -9.49674 -9.19981 -8.57035 -8.50679 -7.33232 -6.03827 -4.00864 1.98959 2.47020 3.27232 3.34966 3.36259 3.83878 4.24655 4.35464 4.41982 4.48368 4.63723 4.77378 4.79043 4.82583 4.86110 4.91350 4.94580 5.05700 5.10412 5.11702 5.22753 5.24105 5.26480 5.30999 5.36613 5.46003 5.53106 5.58082 5.62254 5.70890 5.74716 5.89178 5.93982 5.94729 6.03040 6.12114 6.15163 6.20761 6.23555 6.33131 6.70426 6.84221 6.86415 6.99830 7.21455 7.52157 7.60202 7.91007 8.01374 8.15926 8.67719 9.06226 9.57664 11.09414 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.018917 B = 0.002185 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.775362 B =12811.912728 C =13370.879066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.465 3.535 4 O -0.506 6.506 5 C -0.073 4.073 6 C -0.103 4.103 7 C -0.103 4.103 8 C 0.082 3.918 9 N -0.670 5.670 10 C 0.027 3.973 11 C 0.118 3.882 12 H 0.092 0.908 13 O -0.533 6.533 14 C 0.021 3.979 15 N -0.519 5.519 16 C 0.035 3.965 17 C 0.162 3.838 18 C -0.507 4.507 19 H 0.082 0.918 20 C 0.067 3.933 21 N -0.900 5.900 22 Si 0.876 3.124 23 H -0.278 1.278 24 H -0.285 1.285 25 H -0.268 1.268 26 C -0.119 4.119 27 C -0.099 4.099 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.044 0.956 37 H 0.342 0.658 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.368 0.632 41 H 0.069 0.931 42 H 0.026 0.974 43 H 0.050 0.950 44 H 0.080 0.920 45 H 0.008 0.992 46 H 0.026 0.974 47 H -0.019 1.019 48 H 0.263 0.737 49 H 0.069 0.931 50 H 0.067 0.933 51 H 0.065 0.935 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.420 -9.116 -29.362 30.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.308 3.692 4 O -0.393 6.393 5 C -0.092 4.092 6 C -0.141 4.141 7 C -0.141 4.141 8 C -0.028 4.028 9 N -0.303 5.303 10 C -0.103 4.103 11 C 0.058 3.942 12 H 0.110 0.890 13 O -0.336 6.336 14 C -0.109 4.109 15 N -0.242 5.242 16 C -0.113 4.113 17 C 0.036 3.964 18 C -0.545 4.545 19 H 0.100 0.900 20 C -0.135 4.135 21 N -0.539 5.539 22 Si 0.704 3.296 23 H -0.204 1.204 24 H -0.211 1.211 25 H -0.193 1.193 26 C -0.157 4.157 27 C -0.137 4.137 28 H 0.118 0.882 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.161 0.839 38 H 0.093 0.907 39 H 0.052 0.948 40 H 0.214 0.786 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.069 0.931 44 H 0.099 0.901 45 H 0.026 0.974 46 H 0.044 0.956 47 H -0.001 1.001 48 H 0.073 0.927 49 H 0.088 0.912 50 H 0.086 0.914 51 H 0.084 0.916 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.758 -8.912 -29.013 30.583 hybrid contribution 2.621 -0.014 -0.045 2.621 sum -1.137 -8.926 -29.058 30.419 Atomic orbital electron populations 1.23261 0.76472 1.03629 1.02583 1.86507 1.23343 1.33719 1.84121 1.23927 0.92204 0.81202 0.71907 1.90671 1.67239 1.36388 1.44966 1.21081 0.86413 0.99718 1.02009 1.21416 0.95788 1.00084 0.96771 1.21499 0.95485 0.95372 1.01763 1.21564 0.96553 0.94895 0.89772 1.60402 1.47991 1.18301 1.03563 1.22770 0.93882 1.01531 0.92103 1.21827 0.85101 0.97063 0.90257 0.89049 1.86617 1.29842 1.27571 1.89610 1.22790 0.95330 1.00007 0.92754 1.61850 1.51216 1.09187 1.01950 1.22286 0.98241 0.88859 1.01903 1.20205 0.91188 0.96179 0.88866 1.21046 1.06355 1.38362 0.88752 0.90031 1.24916 0.97325 0.95384 0.95844 1.69902 1.38510 1.47166 0.98354 0.86852 0.84988 0.80168 0.77628 1.20442 1.21133 1.19318 1.21714 0.95649 1.00766 0.97531 1.21354 0.95086 0.93380 1.03852 0.88159 0.91719 0.92085 0.88115 0.89240 0.91423 0.91903 0.91433 0.93796 0.83935 0.90684 0.94809 0.78636 0.91220 0.95558 0.93130 0.90114 0.97395 0.95565 1.00130 0.92691 0.91211 0.91392 0.91631 0.89598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.43 10.47 -39.27 -0.41 -3.84 16 3 C 0.46 4.88 7.26 36.01 0.26 5.14 16 4 O -0.51 -6.79 15.73 -18.75 -0.29 -7.08 16 5 C -0.07 -0.58 2.63 -91.77 -0.24 -0.83 16 6 C -0.10 -0.83 4.98 -26.73 -0.13 -0.96 16 7 C -0.10 -0.73 5.53 -26.73 -0.15 -0.87 16 8 C 0.08 0.60 2.82 -67.72 -0.19 0.41 16 9 N -0.67 -6.10 4.77 -106.74 -0.51 -6.61 16 10 C 0.03 0.27 5.12 -3.83 -0.02 0.25 16 11 C 0.12 1.57 3.02 -26.73 -0.08 1.49 16 12 H 0.09 1.28 6.55 -51.93 -0.34 0.94 16 13 O -0.53 -8.17 13.15 -35.23 -0.46 -8.63 16 14 C 0.02 0.34 4.62 -3.82 -0.02 0.32 16 15 N -0.52 -10.89 4.62 -244.37 -1.13 -12.02 16 16 C 0.04 0.70 9.14 60.07 0.55 1.24 16 17 C 0.16 3.96 3.79 -4.97 -0.02 3.94 16 18 C -0.51 -14.59 9.01 -34.44 -0.31 -14.90 16 19 H 0.08 2.57 7.37 -52.49 -0.39 2.19 16 20 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 21 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 22 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 26 C -0.12 -0.76 5.30 -26.75 -0.14 -0.91 16 27 C -0.10 -0.81 4.33 -26.76 -0.12 -0.92 16 28 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 30 H 0.06 0.42 8.13 -51.93 -0.42 -0.01 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.93 7.60 -51.93 -0.39 0.54 16 33 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.51 7.45 -51.93 -0.39 0.13 16 36 H 0.04 0.33 7.80 -51.93 -0.41 -0.08 16 37 H 0.34 3.13 8.19 -39.29 -0.32 2.81 16 38 H 0.07 0.73 7.43 -51.93 -0.39 0.35 16 39 H 0.03 0.33 8.06 -51.93 -0.42 -0.09 16 40 H 0.37 4.71 9.05 45.56 0.41 5.12 16 41 H 0.07 1.09 7.93 -51.93 -0.41 0.67 16 42 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 43 H 0.05 0.87 6.47 -51.93 -0.34 0.53 16 44 H 0.08 1.78 6.76 -51.93 -0.35 1.43 16 45 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 46 H 0.03 0.65 6.99 -51.93 -0.36 0.28 16 47 H -0.02 -0.46 7.55 -51.93 -0.39 -0.85 16 48 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 49 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.07 0.42 8.12 -51.93 -0.42 -0.01 16 51 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 52 H 0.09 0.88 7.44 -51.93 -0.39 0.50 16 LS Contribution 404.87 15.07 6.10 6.10 Total: -1.00 -33.78 404.87 -8.92 -42.70 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -8.68 Total: 2.93 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 0.36 Total: -3.42 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: -0.86 Total: -45.68 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -1.17 Total: -19.55 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.78 -8.92 -42.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591736412.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.744 kcal (2) G-P(sol) polarization free energy of solvation -33.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds