Wall clock time and date at job start Tue Mar 31 2020 04:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42896 * 109.47214 * 2 1 4 4 C 1.42903 * 114.00298 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47272 * 180.02562 * 4 3 2 6 6 O 1.42896 * 109.47165 * 65.00397 * 5 4 3 7 7 C 1.42901 * 114.00057 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47395 * 179.97438 * 7 6 5 9 9 C 1.52994 * 109.47480 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47424 * 179.97438 * 9 8 7 11 11 O 1.21287 * 119.99701 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00326 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00360 * 180.02562 * 12 10 9 14 14 C 1.53071 * 109.44009 * 84.79625 * 13 12 10 15 15 C 1.53201 * 109.29371 * 181.23934 * 14 13 12 16 16 N 1.46928 * 108.89275 * 305.57634 * 15 14 13 17 17 C 1.36934 * 120.63265 * 233.51651 * 16 15 14 18 18 H 1.07997 * 119.99862 * 151.82898 * 17 16 15 19 19 C 1.38806 * 120.00015 * 331.83027 * 17 16 15 20 20 N 1.31624 * 120.00191 * 343.08772 * 19 17 16 21 21 Si 1.86800 * 120.00146 * 163.08448 * 19 17 16 22 22 H 1.48503 * 109.47142 * 60.00161 * 21 19 17 23 23 H 1.48498 * 109.47084 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47267 * 300.00095 * 21 19 17 25 25 C 1.46932 * 118.73342 * 53.53882 * 16 15 14 26 26 C 1.53045 * 109.46092 * 205.00269 * 13 12 10 27 27 H 1.09005 * 109.46889 * 299.99675 * 1 2 3 28 28 H 1.09000 * 109.47021 * 59.99566 * 1 2 3 29 29 H 1.09002 * 109.46722 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47336 * 240.00032 * 2 1 3 31 31 H 1.09003 * 109.47744 * 120.00407 * 2 1 3 32 32 H 1.08997 * 109.47280 * 59.99846 * 4 3 2 33 33 H 1.09006 * 109.47327 * 300.00167 * 4 3 2 34 34 H 1.08994 * 109.46783 * 304.99857 * 5 4 3 35 35 H 1.09003 * 109.46534 * 184.99789 * 5 4 3 36 36 H 1.08994 * 109.47536 * 59.99381 * 7 6 5 37 37 H 1.08999 * 109.46528 * 299.99646 * 7 6 5 38 38 H 1.09003 * 109.46860 * 59.99650 * 8 7 6 39 39 H 1.08999 * 109.46898 * 299.99890 * 8 7 6 40 40 H 1.09003 * 109.46960 * 60.00201 * 9 8 7 41 41 H 1.08999 * 109.46885 * 300.00321 * 9 8 7 42 42 H 0.97005 * 119.99791 * 0.02562 * 12 10 9 43 43 H 1.08998 * 109.45866 * 324.97703 * 13 12 10 44 44 H 1.09002 * 109.39343 * 61.36176 * 14 13 12 45 45 H 1.09003 * 109.62467 * 301.25403 * 14 13 12 46 46 H 1.09000 * 109.58250 * 185.72113 * 15 14 13 47 47 H 1.08995 * 109.58477 * 65.43833 * 15 14 13 48 48 H 0.96995 * 120.00379 * 180.02562 * 20 19 17 49 49 H 1.08996 * 109.59017 * 66.18099 * 25 16 15 50 50 H 1.09009 * 109.58200 * 186.46074 * 25 16 15 51 51 H 1.09002 * 109.49555 * 58.67538 * 26 13 12 52 52 H 1.08992 * 109.52043 * 298.59539 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 0.0001 6 8 3.3987 3.5447 1.2217 7 6 3.7195 4.9334 1.3244 8 6 3.2178 5.4751 2.6645 9 6 3.5618 6.9617 2.7748 10 6 3.0671 7.4953 4.0944 11 8 2.4960 6.7588 4.8706 12 7 3.2601 8.7907 4.4126 13 6 2.7797 9.3093 5.6957 14 6 3.8248 9.0344 6.7798 15 6 3.3058 9.5503 8.1257 16 7 2.9384 10.9657 7.9830 17 6 3.4532 11.9091 8.8315 18 1 3.5737 12.9286 8.4963 19 6 3.8202 11.5551 10.1226 20 7 3.3814 10.4302 10.6464 21 14 4.9369 12.6751 11.1165 22 1 4.2900 14.0019 11.2786 23 1 5.1775 12.0746 12.4532 24 1 6.2316 12.8389 10.4077 25 6 2.0077 11.3494 6.9128 26 6 2.5425 10.8168 5.5797 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8333 0.9767 -0.8908 33 1 3.8341 0.9764 0.8892 34 1 3.3492 3.4418 -0.8412 35 1 4.9082 3.0254 -0.0899 36 1 3.2408 5.4781 0.5107 37 1 4.8000 5.0622 1.2617 38 1 3.6963 4.9304 3.4785 39 1 2.1373 5.3462 2.7268 40 1 3.0836 7.5066 1.9607 41 1 4.6424 7.0902 2.7125 42 1 3.7172 9.3796 3.7919 43 1 1.8457 8.8140 5.9607 44 1 4.7525 9.5476 6.5267 45 1 4.0086 7.9621 6.8476 46 1 4.0854 9.4495 8.8808 47 1 2.4305 8.9739 8.4250 48 1 3.6375 10.1829 11.5487 49 1 1.0259 10.9194 7.1107 50 1 1.9288 12.4358 6.8694 51 1 1.8145 11.0109 4.7920 52 1 3.4810 11.3157 5.3387 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597167307.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:01 Heat of formation + Delta-G solvation = -128.368579 kcal Electronic energy + Delta-G solvation = -27569.824595 eV Core-core repulsion = 23569.521998 eV Total energy + Delta-G solvation = -4000.302597 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.73748 -38.84953 -37.76262 -37.29032 -34.41492 -33.83687 -32.18676 -31.94776 -30.10963 -29.70912 -29.31352 -26.88328 -24.82377 -23.14959 -22.93184 -22.47222 -22.20045 -21.37546 -20.06957 -19.21045 -17.51675 -17.32062 -16.93014 -16.54098 -16.30545 -16.00461 -15.63233 -15.28097 -15.18261 -14.73653 -14.07130 -13.96778 -13.66086 -13.52347 -13.48796 -13.33163 -12.94618 -12.88982 -12.59036 -12.47837 -12.17508 -12.12737 -11.83681 -11.72019 -11.46775 -11.38509 -11.17806 -11.10046 -11.02045 -10.90647 -10.70610 -10.37240 -10.24056 -10.04641 -9.98393 -9.87454 -9.78097 -9.73368 -9.40787 -8.66719 -8.39628 -6.66324 -5.76566 -3.19947 2.85366 3.14013 3.28135 3.39469 3.45511 3.46318 3.60488 4.50896 4.57169 4.65729 4.70927 4.74127 4.79495 4.81787 4.88468 4.97450 5.02988 5.09683 5.14291 5.19233 5.26601 5.30659 5.36223 5.39629 5.42722 5.47992 5.50702 5.55255 5.66210 5.77528 5.85640 5.97720 6.10725 6.15985 6.26381 6.39622 6.46592 6.63817 6.67230 6.79931 6.80450 6.94475 6.96066 6.97951 7.40001 7.69809 7.77639 7.80928 8.46481 8.48285 9.22851 9.86175 10.43191 11.31948 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.025613 B = 0.001593 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.945177 B =17568.318427 C =17747.240308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.381 6.381 4 C 0.064 3.936 5 C 0.064 3.936 6 O -0.378 6.378 7 C 0.063 3.937 8 C -0.103 4.103 9 C -0.138 4.138 10 C 0.508 3.492 11 O -0.538 6.538 12 N -0.727 5.727 13 C 0.150 3.850 14 C -0.146 4.146 15 C 0.173 3.827 16 N -0.592 5.592 17 C -0.256 4.256 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.903 3.097 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.148 3.852 26 C -0.138 4.138 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.048 0.952 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.394 0.606 43 H 0.081 0.919 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.089 0.911 47 H 0.020 0.980 48 H 0.255 0.745 49 H 0.020 0.980 50 H 0.058 0.942 51 H 0.055 0.945 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.378 -15.266 -25.812 30.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.013 4.013 5 C -0.013 4.013 6 O -0.297 6.297 7 C -0.013 4.013 8 C -0.141 4.141 9 C -0.178 4.178 10 C 0.294 3.706 11 O -0.415 6.415 12 N -0.377 5.377 13 C 0.047 3.953 14 C -0.186 4.186 15 C 0.047 3.953 16 N -0.315 5.315 17 C -0.386 4.386 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.733 3.267 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.021 3.979 26 C -0.178 4.178 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.227 0.773 43 H 0.099 0.901 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.107 0.893 47 H 0.039 0.961 48 H 0.065 0.935 49 H 0.038 0.962 50 H 0.076 0.924 51 H 0.073 0.927 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.756 -15.797 -24.900 29.498 hybrid contribution 1.235 0.730 -0.023 1.435 sum 1.991 -15.067 -24.924 29.192 Atomic orbital electron populations 1.21742 0.93632 1.02202 1.03351 1.22465 0.95828 0.83817 0.99888 1.87979 1.20440 1.26260 1.95370 1.22513 0.82322 0.95646 1.00803 1.22492 0.98202 0.92643 0.87945 1.87974 1.81065 1.23124 1.37577 1.22520 0.98743 0.81956 0.98117 1.21197 1.03404 0.93275 0.96225 1.21550 1.02903 0.97087 0.96243 1.20515 0.79485 0.82279 0.88320 1.90731 1.41994 1.56986 1.51786 1.46345 1.59995 1.10351 1.20999 1.21035 0.98251 0.94111 0.81949 1.22558 0.98062 0.99914 0.98080 1.20753 0.98950 0.83494 0.92114 1.44084 1.49743 1.04057 1.33605 1.19130 1.36030 0.91764 0.91633 0.91708 1.25065 1.00683 0.97688 0.96123 1.70027 1.45091 1.24407 1.14998 0.86368 0.81059 0.80120 0.79185 1.20872 1.21635 1.21073 1.20842 0.92255 0.97875 0.86951 1.22321 1.01179 0.94202 1.00096 0.91563 0.91927 0.91137 0.93642 0.93327 0.91952 0.92353 0.92506 0.91844 0.93314 0.93389 0.90261 0.90208 0.89013 0.88956 0.77261 0.90127 0.92779 0.92858 0.89319 0.96146 0.93514 0.96225 0.92365 0.92679 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.62 16 2 C 0.06 0.41 6.66 37.16 0.25 0.66 16 3 O -0.38 -3.85 10.31 -40.08 -0.41 -4.26 16 4 C 0.06 0.49 6.32 37.16 0.23 0.72 16 5 C 0.06 0.50 6.32 37.16 0.23 0.74 16 6 O -0.38 -4.22 10.31 -40.08 -0.41 -4.63 16 7 C 0.06 0.57 5.94 37.16 0.22 0.79 16 8 C -0.10 -1.14 4.87 -26.73 -0.13 -1.27 16 9 C -0.14 -1.32 5.70 -27.89 -0.16 -1.48 16 10 C 0.51 7.35 7.79 -10.99 -0.09 7.27 16 11 O -0.54 -10.35 15.65 5.55 0.09 -10.26 16 12 N -0.73 -10.02 5.08 -53.75 -0.27 -10.30 16 13 C 0.15 2.64 2.41 -67.87 -0.16 2.47 16 14 C -0.15 -2.96 5.66 -26.59 -0.15 -3.11 16 15 C 0.17 4.28 5.30 -3.71 -0.02 4.26 16 16 N -0.59 -14.92 3.00 -172.31 -0.52 -15.44 16 17 C -0.26 -7.04 9.58 -15.06 -0.14 -7.18 16 18 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 19 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 20 N -0.90 -26.56 11.20 55.49 0.62 -25.94 16 21 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.15 3.07 6.52 -3.71 -0.02 3.05 16 26 C -0.14 -2.30 5.55 -26.61 -0.15 -2.45 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 39 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.39 4.13 8.60 -40.82 -0.35 3.78 16 43 H 0.08 1.62 7.58 -51.93 -0.39 1.22 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.09 2.44 6.06 -51.93 -0.31 2.13 16 47 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.06 1.16 7.93 -51.92 -0.41 0.75 16 51 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 52 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 417.52 15.07 6.29 6.29 Total: -1.00 -34.25 417.52 -9.33 -43.58 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -9.89 Total: 0.36 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 0.21 Total: 3.86 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: -0.17 Total: -51.67 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.74 Total: -19.15 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.25 -9.33 -43.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597167307.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.786 kcal (2) G-P(sol) polarization free energy of solvation -34.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds