Wall clock time and date at job start Tue Mar 31 2020 04:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00295 * 2 1 4 4 C 1.52994 * 109.47566 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47433 * 180.02562 * 4 3 2 6 6 O 1.42904 * 109.47358 * 180.02562 * 5 4 3 7 7 C 1.42899 * 113.99857 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.46612 * 179.97438 * 7 6 5 9 9 C 1.50708 * 109.46966 * 179.97438 * 8 7 6 10 10 O 1.21277 * 119.99634 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00012 * 179.97438 * 9 8 7 12 12 C 1.46502 * 120.00029 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47125 * 179.72349 * 12 11 9 14 14 H 1.08999 * 109.49764 * 54.93560 * 13 12 11 15 15 C 1.53039 * 109.49537 * 175.00131 * 13 12 11 16 16 C 1.53042 * 109.53855 * 181.31760 * 15 13 12 17 17 C 1.53192 * 109.31444 * 298.63453 * 16 15 13 18 18 N 1.46935 * 108.77357 * 54.63322 * 17 16 15 19 19 C 1.36933 * 120.63123 * 126.36917 * 18 17 16 20 20 H 1.07993 * 120.00383 * 207.68902 * 19 18 17 21 21 C 1.38812 * 119.99756 * 27.69426 * 19 18 17 22 22 N 1.31621 * 120.00300 * 17.35242 * 21 19 18 23 23 Si 1.86803 * 120.00057 * 197.36006 * 21 19 18 24 24 H 1.48503 * 109.46757 * 59.99425 * 23 21 19 25 25 H 1.48495 * 109.47465 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46804 * 299.99616 * 23 21 19 27 27 C 1.46928 * 118.73754 * 306.39523 * 18 17 16 28 28 H 1.08998 * 109.47388 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47018 * 299.99920 * 1 2 3 30 30 H 1.08997 * 109.47214 * 59.99808 * 1 2 3 31 31 H 1.09000 * 109.47427 * 59.99698 * 3 2 1 32 32 H 1.09007 * 109.46756 * 300.00040 * 3 2 1 33 33 H 1.09000 * 109.47232 * 59.99287 * 4 3 2 34 34 H 1.09007 * 109.46877 * 299.99674 * 4 3 2 35 35 H 1.09000 * 109.47601 * 59.99381 * 5 4 3 36 36 H 1.09007 * 109.46715 * 299.99641 * 5 4 3 37 37 H 1.08997 * 109.47674 * 59.99697 * 7 6 5 38 38 H 1.08999 * 109.46679 * 299.98974 * 7 6 5 39 39 H 1.09001 * 109.47599 * 59.99531 * 8 7 6 40 40 H 1.09003 * 109.47438 * 299.99170 * 8 7 6 41 41 H 0.97001 * 120.00029 * 359.72772 * 11 9 8 42 42 H 1.08996 * 109.47062 * 299.72683 * 12 11 9 43 43 H 1.08998 * 109.46981 * 59.72713 * 12 11 9 44 44 H 1.09007 * 109.46281 * 301.33658 * 15 13 12 45 45 H 1.08993 * 109.46282 * 61.31262 * 15 13 12 46 46 H 1.09003 * 109.49835 * 58.58245 * 16 15 13 47 47 H 1.08995 * 109.50227 * 178.64684 * 16 15 13 48 48 H 1.08993 * 109.58901 * 174.41812 * 17 16 15 49 49 H 1.08994 * 109.58464 * 294.85076 * 17 16 15 50 50 H 0.97002 * 119.99878 * 180.02562 * 22 21 19 51 51 H 1.09003 * 109.58499 * 293.82009 * 27 18 17 52 52 H 1.08997 * 109.58424 * 173.39682 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1578 2.5823 0.0000 6 8 5.5824 2.4695 -0.0012 7 6 6.2648 3.7250 -0.0001 8 6 7.7757 3.4841 -0.0009 9 6 8.4955 4.8081 -0.0004 10 8 7.8623 5.8425 0.0000 11 7 9.8428 4.8427 -0.0005 12 6 10.5425 6.1298 -0.0006 13 6 12.0534 5.8889 0.0064 14 1 12.3233 5.2467 -0.8320 15 6 12.7846 7.2275 -0.1194 16 6 14.2954 6.9849 -0.1456 17 6 14.7248 6.3209 1.1665 18 7 13.9220 5.1066 1.3668 19 6 14.5275 3.8992 1.5922 20 1 14.0316 2.9843 1.3037 21 6 15.7786 3.8514 2.1915 22 7 16.2353 4.8980 2.8461 23 14 16.8143 2.3016 2.0689 24 1 17.0888 2.0015 0.6406 25 1 18.0980 2.5060 2.7869 26 1 16.0796 1.1656 2.6811 27 6 12.4573 5.2125 1.3201 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6887 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8567 0.6438 -0.8908 34 1 3.8574 0.6436 0.8892 35 1 3.8365 3.1228 0.8904 36 1 3.8358 3.1238 -0.8896 37 1 5.9876 4.2886 0.8907 38 1 5.9863 4.2906 -0.8893 39 1 8.0534 2.9203 -0.8915 40 1 8.0540 2.9186 0.8885 41 1 10.3492 4.0154 0.0032 42 1 10.2683 6.6923 -0.8930 43 1 10.2609 6.6965 0.8869 44 1 12.4802 7.7223 -1.0417 45 1 12.5333 7.8599 0.7320 46 1 14.5447 6.3321 -0.9822 47 1 14.8148 7.9364 -0.2593 48 1 15.7808 6.0561 1.1135 49 1 14.5596 7.0090 1.9954 50 1 17.1098 4.8646 3.2645 51 1 12.1072 5.8103 2.1617 52 1 12.0173 4.2165 1.3687 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598688836.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:05 Heat of formation + Delta-G solvation = -131.692109 kcal Electronic energy + Delta-G solvation = -27419.460846 eV Core-core repulsion = 23419.014130 eV Total energy + Delta-G solvation = -4000.446717 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.85499 -38.69671 -38.06429 -37.70635 -34.86009 -33.54438 -33.02770 -31.55329 -30.46730 -30.15308 -27.51024 -25.89354 -25.31122 -25.01512 -23.37069 -22.13311 -21.99140 -20.94691 -20.27524 -19.05635 -17.64453 -17.03595 -16.88268 -16.69550 -16.30584 -16.02684 -15.85752 -15.42895 -15.13463 -14.82898 -14.59128 -14.39319 -14.02392 -13.75136 -13.45618 -13.42659 -13.02858 -12.80135 -12.39429 -12.32940 -12.28061 -12.19184 -12.01753 -11.86827 -11.66658 -11.31854 -11.28061 -11.27227 -11.02754 -10.71865 -10.52741 -10.26922 -10.20259 -10.16202 -10.00809 -9.89018 -9.88696 -9.57173 -9.45014 -8.96179 -8.48216 -6.70232 -5.81229 -3.23943 2.63000 2.76522 3.27628 3.36412 3.42708 3.43338 3.86364 4.46247 4.46855 4.61213 4.63576 4.75225 4.81536 4.85246 4.88441 4.93515 4.97280 5.05721 5.09193 5.17279 5.22634 5.27413 5.33924 5.41575 5.44763 5.54510 5.59773 5.60402 5.68230 5.75013 5.80752 5.92977 5.97901 6.21226 6.30476 6.35293 6.48188 6.56902 6.64988 6.67987 6.75045 6.83616 6.88501 6.93832 7.37844 7.54134 7.65107 7.76115 8.21972 8.41987 9.18378 9.81994 10.38667 11.27017 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.015943 B = 0.001703 C = 0.001560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.846768 B =16438.177353 C =17945.291570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.064 3.936 4 C -0.120 4.120 5 C 0.068 3.932 6 O -0.389 6.389 7 C 0.080 3.920 8 C -0.142 4.142 9 C 0.516 3.484 10 O -0.551 6.551 11 N -0.721 5.721 12 C 0.127 3.873 13 C -0.118 4.118 14 H 0.073 0.927 15 C -0.099 4.099 16 C -0.142 4.142 17 C 0.169 3.831 18 N -0.591 5.591 19 C -0.256 4.256 20 H 0.065 0.935 21 C 0.004 3.996 22 N -0.901 5.901 23 Si 0.902 3.098 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.154 3.846 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.405 0.595 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.047 0.953 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.049 0.951 48 H 0.087 0.913 49 H 0.017 0.983 50 H 0.254 0.746 51 H 0.018 0.982 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.764 -3.126 -7.551 26.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.013 4.013 4 C -0.157 4.157 5 C -0.008 4.008 6 O -0.309 6.309 7 C 0.003 3.997 8 C -0.182 4.182 9 C 0.302 3.698 10 O -0.430 6.430 11 N -0.373 5.373 12 C 0.003 3.997 13 C -0.139 4.139 14 H 0.092 0.908 15 C -0.138 4.138 16 C -0.181 4.181 17 C 0.043 3.957 18 N -0.313 5.313 19 C -0.385 4.385 20 H 0.082 0.918 21 C -0.195 4.195 22 N -0.546 5.546 23 Si 0.732 3.268 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.027 3.973 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.240 0.760 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.068 0.932 48 H 0.105 0.895 49 H 0.035 0.965 50 H 0.064 0.936 51 H 0.036 0.964 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -24.817 -2.710 -7.436 26.049 hybrid contribution 0.533 -0.641 0.007 0.833 sum -24.284 -3.351 -7.429 25.615 Atomic orbital electron populations 1.22760 0.80728 1.02948 1.00067 1.87874 1.19918 1.27780 1.95446 1.22371 0.93520 0.84890 1.00474 1.21372 0.92598 0.96873 1.04880 1.22263 0.81218 0.96786 1.00571 1.87795 1.17766 1.29715 1.95590 1.22114 0.90832 0.84982 1.01753 1.21480 0.94528 0.96199 1.05952 1.20334 0.82577 0.90814 0.76040 1.90694 1.66585 1.35399 1.50294 1.46068 1.06105 1.10589 1.74491 1.21472 0.91983 0.84491 1.01738 1.21962 0.91402 0.98737 1.01788 0.90836 1.21340 0.96480 0.95576 1.00373 1.22173 0.94454 0.99663 1.01815 1.20801 0.97579 0.86666 0.90635 1.44031 0.98875 1.05667 1.82773 1.19121 1.01094 0.84981 1.33343 0.91750 1.25030 0.99989 0.97288 0.97213 1.70032 1.19230 1.29977 1.35318 0.86378 0.79803 0.82932 0.77700 1.21036 1.21631 1.20870 1.20896 0.86579 0.97377 0.92439 0.89459 0.93965 0.93980 0.93009 0.93052 0.90114 0.90069 0.93003 0.93072 0.92312 0.92404 0.87970 0.87775 0.75990 0.91982 0.91562 0.93459 0.92485 0.92754 0.93182 0.89527 0.96469 0.93557 0.96376 0.93124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.30 10.70 -35.23 -0.38 -3.68 16 3 C 0.06 0.43 5.94 37.15 0.22 0.65 16 4 C -0.12 -0.91 5.95 -26.74 -0.16 -1.07 16 5 C 0.07 0.54 5.94 37.16 0.22 0.76 16 6 O -0.39 -4.03 10.34 -35.23 -0.36 -4.40 16 7 C 0.08 0.82 5.23 37.16 0.19 1.02 16 8 C -0.14 -1.41 6.07 -27.88 -0.17 -1.58 16 9 C 0.52 6.70 7.83 -10.98 -0.09 6.61 16 10 O -0.55 -9.02 15.98 5.56 0.09 -8.93 16 11 N -0.72 -9.13 5.33 -60.29 -0.32 -9.45 16 12 C 0.13 1.79 5.07 -4.04 -0.02 1.77 16 13 C -0.12 -1.89 2.37 -90.50 -0.21 -2.11 16 14 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 15 C -0.10 -1.61 5.17 -26.69 -0.14 -1.74 16 16 C -0.14 -2.63 6.08 -26.61 -0.16 -2.79 16 17 C 0.17 3.95 5.31 -3.71 -0.02 3.93 16 18 N -0.59 -14.31 3.00 -172.32 -0.52 -14.83 16 19 C -0.26 -6.82 9.59 -15.06 -0.14 -6.96 16 20 H 0.06 1.66 7.89 -52.49 -0.41 1.25 16 21 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 22 N -0.90 -25.83 11.19 55.49 0.62 -25.21 16 23 Si 0.90 21.30 29.59 -169.99 -5.03 16.27 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 27 C 0.15 3.03 5.60 -3.71 -0.02 3.01 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 38 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.41 4.55 7.71 -40.82 -0.31 4.23 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 47 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.09 2.28 6.03 -51.93 -0.31 1.96 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 50 H 0.25 7.07 8.31 -40.82 -0.34 6.74 16 51 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 52 H 0.05 0.95 7.14 -51.93 -0.37 0.58 16 LS Contribution 415.63 15.07 6.26 6.26 Total: -1.00 -32.00 415.63 -8.95 -40.95 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -9.84 Total: 0.21 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 0.53 Total: 2.79 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: -0.22 Total: -49.48 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.65 Total: -17.00 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.00 -8.95 -40.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598688836.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.743 kcal (2) G-P(sol) polarization free energy of solvation -31.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds