Wall clock time and date at job start Tue Mar 31 2020 04:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46509 * 109.47317 * 2 1 4 4 C 1.46499 * 119.99636 * 270.00370 * 3 2 1 5 5 C 1.50709 * 109.46626 * 269.99279 * 4 3 2 6 6 H 1.07995 * 120.00099 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99771 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00164 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00376 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47078 * 89.99491 * 9 7 5 11 11 H 1.48490 * 109.47448 * 210.00070 * 9 7 5 12 12 H 1.48506 * 109.46941 * 329.99739 * 9 7 5 13 13 C 1.34770 * 119.99968 * 89.99947 * 3 2 1 14 14 O 1.21286 * 120.00163 * 180.02562 * 13 3 2 15 15 C 1.50702 * 120.00257 * 359.97438 * 13 3 2 16 16 N 1.46893 * 109.47286 * 180.02562 * 15 13 3 17 17 C 1.48561 * 111.00239 * 170.00111 * 16 15 13 18 18 C 1.54382 * 104.59608 * 200.95711 * 17 16 15 19 19 C 1.52996 * 110.41526 * 264.91338 * 18 17 16 20 20 C 1.53004 * 110.32149 * 142.74824 * 18 17 16 21 21 O 1.42899 * 109.47190 * 64.36253 * 20 18 17 22 22 C 1.54259 * 105.06032 * 23.85756 * 18 17 16 23 23 C 1.53007 * 110.32026 * 241.00077 * 22 18 17 24 24 C 1.52997 * 110.32840 * 118.89325 * 22 18 17 25 25 O 1.42898 * 109.47319 * 180.02562 * 24 22 18 26 26 C 1.48558 * 111.00083 * 54.58170 * 16 15 13 27 27 H 1.09001 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47065 * 300.00275 * 1 2 3 29 29 H 1.08997 * 109.47156 * 59.99921 * 1 2 3 30 30 H 1.08999 * 109.47480 * 240.00058 * 2 1 3 31 31 H 1.09004 * 109.47038 * 119.99663 * 2 1 3 32 32 H 1.08993 * 109.47662 * 29.99217 * 4 3 2 33 33 H 1.08997 * 109.46988 * 150.00240 * 4 3 2 34 34 H 0.97000 * 120.00139 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.46878 * 60.00251 * 15 13 3 36 36 H 1.09002 * 109.47014 * 300.00097 * 15 13 3 37 37 H 1.08998 * 110.40848 * 82.17987 * 17 16 15 38 38 H 1.08998 * 110.41135 * 319.73789 * 17 16 15 39 39 H 1.08992 * 109.47543 * 175.69323 * 19 18 17 40 40 H 1.09009 * 109.46755 * 295.69191 * 19 18 17 41 41 H 1.09000 * 109.46797 * 55.68527 * 19 18 17 42 42 H 1.08996 * 109.47206 * 184.36676 * 20 18 17 43 43 H 1.09004 * 109.46936 * 304.36825 * 20 18 17 44 44 H 0.96698 * 113.99937 * 180.02562 * 21 20 18 45 45 H 1.08994 * 109.47096 * 298.56904 * 23 22 18 46 46 H 1.08994 * 109.47350 * 58.57172 * 23 22 18 47 47 H 1.09005 * 109.46849 * 178.57326 * 23 22 18 48 48 H 1.09002 * 109.47153 * 59.99730 * 24 22 18 49 49 H 1.09001 * 109.46832 * 299.99921 * 24 22 18 50 50 H 0.96701 * 113.99881 * 180.02562 * 25 24 22 51 51 H 1.09000 * 110.41322 * 40.26590 * 26 16 15 52 52 H 1.09004 * 110.41245 * 277.81947 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2303 -1.0961 7 6 4.1491 2.3895 -2.8779 8 7 5.3911 2.1825 -3.2578 9 14 3.0129 3.4349 -3.9294 10 1 3.1162 4.8552 -3.5084 11 1 3.4057 3.3117 -5.3560 12 1 1.6131 2.9689 -3.7594 13 6 2.2430 2.0166 1.1671 14 8 2.6469 3.1602 1.1672 15 6 1.9913 1.3064 2.4723 16 7 2.3090 2.2066 3.5888 17 6 1.8507 1.6345 4.8810 18 6 1.7466 2.8486 5.8288 19 6 3.0307 2.9987 6.6468 20 6 0.5406 2.6955 6.7579 21 8 0.7350 1.5636 7.6082 22 6 1.5568 4.0663 4.9011 23 6 2.7105 5.0554 5.0798 24 6 0.2203 4.7522 5.1909 25 8 0.0632 5.8758 4.3221 26 6 1.5625 3.4855 3.4706 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5818 1.6877 -2.0284 33 1 2.0956 3.1410 -1.1384 34 1 5.7172 2.5730 -4.0838 35 1 2.6211 0.4188 2.5302 36 1 0.9432 1.0127 2.5298 37 1 2.5799 0.9182 5.2595 38 1 0.8766 1.1601 4.7625 39 1 2.9716 3.9022 7.2536 40 1 3.1509 2.1318 7.2967 41 1 3.8846 3.0688 5.9730 42 1 0.4346 3.5934 7.3667 43 1 -0.3610 2.5518 6.1623 44 1 0.0074 1.4055 8.2251 45 1 2.7232 5.4168 6.1080 46 1 3.6541 4.5569 4.8583 47 1 2.5759 5.8971 4.4005 48 1 0.2018 5.0886 6.2275 49 1 -0.5938 4.0471 5.0231 50 1 -0.7641 6.3597 4.4506 51 1 0.5432 3.3008 3.1314 52 1 2.0746 4.1629 2.7873 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599624861.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:06 Heat of formation + Delta-G solvation = -114.056869 kcal Electronic energy + Delta-G solvation = -30724.303823 eV Core-core repulsion = 26724.621827 eV Total energy + Delta-G solvation = -3999.681995 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.75694 -39.03116 -36.92739 -36.50676 -35.34301 -34.03451 -32.64285 -31.14064 -30.33516 -28.89831 -28.40606 -26.92897 -25.65010 -24.82312 -23.58136 -22.96091 -21.71167 -20.82655 -18.48245 -18.13602 -17.96738 -16.93029 -16.85536 -16.32948 -16.06986 -15.72495 -15.49151 -15.02856 -14.71230 -14.41845 -14.05806 -13.83075 -13.65296 -13.47974 -13.45702 -13.29313 -12.96408 -12.67970 -12.47836 -12.35605 -12.22043 -11.95050 -11.82756 -11.65533 -11.48090 -11.38935 -11.24583 -11.10216 -10.92183 -10.70108 -10.64443 -10.55103 -10.50081 -10.44251 -10.20169 -10.09663 -9.84285 -9.47578 -8.83657 -8.54313 -8.24867 -7.65240 -6.03892 -4.02174 3.32066 3.37763 3.39717 3.40031 3.66632 3.82519 3.96563 4.25821 4.38231 4.43592 4.66796 4.70478 4.92445 4.96644 5.04751 5.07871 5.11402 5.23912 5.26040 5.28864 5.30594 5.36540 5.38399 5.56414 5.57976 5.59324 5.66211 5.72258 5.80657 5.87979 5.95156 5.95799 5.99065 6.14710 6.15628 6.22462 6.24625 6.39200 6.50801 6.60773 6.73626 6.95797 7.01094 7.11210 7.30199 7.42288 7.48311 7.66250 8.31149 8.52545 8.99328 9.07310 9.56606 11.09628 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.003365 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.361727 B = 8317.939782 C = 8845.243656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.594 5.594 4 C 0.218 3.782 5 C -0.526 4.526 6 H 0.075 0.925 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.509 3.491 14 O -0.523 6.523 15 C 0.028 3.972 16 N -0.491 5.491 17 C 0.048 3.952 18 C -0.052 4.052 19 C -0.131 4.131 20 C 0.083 3.917 21 O -0.567 6.567 22 C -0.056 4.056 23 C -0.128 4.128 24 C 0.084 3.916 25 O -0.562 6.562 26 C 0.050 3.950 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.028 0.972 33 H 0.035 0.965 34 H 0.264 0.736 35 H 0.101 0.899 36 H 0.056 0.944 37 H 0.085 0.915 38 H 0.041 0.959 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.048 0.952 43 H 0.045 0.955 44 H 0.376 0.624 45 H 0.049 0.951 46 H 0.069 0.931 47 H 0.063 0.937 48 H 0.046 0.954 49 H 0.042 0.958 50 H 0.375 0.625 51 H 0.033 0.967 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.211 -0.780 21.550 26.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.098 3.902 5 C -0.565 4.565 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.192 1.192 13 C 0.295 3.705 14 O -0.399 6.399 15 C -0.104 4.104 16 N -0.215 5.215 17 C -0.080 4.080 18 C -0.053 4.053 19 C -0.188 4.188 20 C 0.005 3.995 21 O -0.372 6.372 22 C -0.057 4.057 23 C -0.185 4.185 24 C 0.006 3.994 25 O -0.366 6.366 26 C -0.077 4.077 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.222 0.778 45 H 0.068 0.932 46 H 0.088 0.912 47 H 0.082 0.918 48 H 0.064 0.936 49 H 0.060 0.940 50 H 0.221 0.779 51 H 0.051 0.949 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.116 -0.294 20.790 24.583 hybrid contribution -2.588 0.376 -0.199 2.622 sum -15.704 0.082 20.592 25.896 Atomic orbital electron populations 1.22230 0.96950 1.01502 1.02050 1.21435 0.93228 0.84021 1.03125 1.47921 1.64438 1.13334 1.06962 1.19617 0.97256 0.93323 0.80039 1.21340 0.95350 1.32773 1.07001 0.90734 1.24854 0.94973 0.95822 0.97368 1.69901 1.15132 1.45077 1.23551 0.86859 0.81441 0.81688 0.79736 1.19907 1.21134 1.19164 1.20126 0.78566 0.87045 0.84795 1.90620 1.44710 1.17889 1.86646 1.22278 1.00236 0.97077 0.90772 1.65286 1.52692 1.03289 1.00220 1.23183 0.99088 0.96073 0.89646 1.21298 0.95528 0.94481 0.93981 1.21827 0.96262 1.01387 0.99281 1.22438 0.96950 0.88142 0.91964 1.86510 1.48058 1.49211 1.53392 1.21382 0.94674 0.94112 0.95488 1.21800 0.97569 0.98409 1.00763 1.22407 0.96617 0.87870 0.92500 1.86586 1.44136 1.43897 1.62009 1.23374 0.96292 0.92452 0.95559 0.91987 0.93278 0.92224 0.89668 0.91470 0.95423 0.94669 0.92623 0.88146 0.92642 0.89651 0.94124 0.92828 0.92139 0.91186 0.93353 0.93703 0.77760 0.93238 0.91246 0.91827 0.93627 0.93971 0.77891 0.94905 0.86348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.11 1.67 5.93 -4.04 -0.02 1.65 16 3 N -0.59 -12.37 2.46 -175.05 -0.43 -12.80 16 4 C 0.22 5.42 4.23 -5.19 -0.02 5.40 16 5 C -0.53 -15.38 9.94 -34.44 -0.34 -15.73 16 6 H 0.07 2.40 8.06 -52.49 -0.42 1.97 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 8 N -0.90 -28.16 13.96 55.43 0.77 -27.39 16 9 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 10 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 13 C 0.51 10.60 7.39 -10.99 -0.08 10.52 16 14 O -0.52 -12.99 13.24 5.55 0.07 -12.91 16 15 C 0.03 0.44 4.10 -4.98 -0.02 0.42 16 16 N -0.49 -7.69 5.33 -231.41 -1.23 -8.92 16 17 C 0.05 0.60 5.38 -2.18 -0.01 0.59 16 18 C -0.05 -0.57 0.83 -153.13 -0.13 -0.70 16 19 C -0.13 -1.41 7.12 37.16 0.26 -1.14 16 20 C 0.08 0.69 4.65 37.16 0.17 0.87 16 21 O -0.57 -4.67 12.71 -35.23 -0.45 -5.12 16 22 C -0.06 -0.68 0.83 -153.12 -0.13 -0.81 16 23 C -0.13 -1.64 7.10 37.16 0.26 -1.38 16 24 C 0.08 0.83 4.65 37.16 0.17 1.01 16 25 O -0.56 -6.23 12.73 -35.23 -0.45 -6.68 16 26 C 0.05 0.80 4.20 -2.18 -0.01 0.79 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.60 7.22 -51.93 -0.37 0.23 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 31 H 0.07 0.90 6.44 -51.93 -0.33 0.57 16 32 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 33 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 34 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 35 H 0.10 1.47 7.40 -51.93 -0.38 1.09 16 36 H 0.06 0.76 6.92 -51.93 -0.36 0.40 16 37 H 0.09 1.07 7.86 -51.93 -0.41 0.66 16 38 H 0.04 0.48 7.51 -51.93 -0.39 0.09 16 39 H 0.05 0.52 6.84 -51.93 -0.36 0.16 16 40 H 0.06 0.65 7.62 -51.92 -0.40 0.25 16 41 H 0.07 0.85 6.76 -51.93 -0.35 0.50 16 42 H 0.05 0.35 6.80 -51.93 -0.35 -0.01 16 43 H 0.04 0.35 6.75 -51.93 -0.35 0.00 16 44 H 0.38 1.39 9.12 45.56 0.42 1.80 16 45 H 0.05 0.53 6.88 -51.93 -0.36 0.17 16 46 H 0.07 0.97 6.71 -51.93 -0.35 0.63 16 47 H 0.06 0.90 7.66 -51.93 -0.40 0.51 16 48 H 0.05 0.37 6.80 -51.93 -0.35 0.01 16 49 H 0.04 0.38 6.75 -51.93 -0.35 0.03 16 50 H 0.37 2.32 9.12 45.56 0.42 2.74 16 51 H 0.03 0.52 7.68 -51.93 -0.40 0.12 16 52 H 0.12 2.36 5.77 -51.93 -0.30 2.06 16 LS Contribution 390.02 15.07 5.88 5.88 Total: -1.00 -36.69 390.02 -7.43 -44.11 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.31 Total: 4.79 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 0.39 Total: 1.74 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: -0.89 Total: -49.10 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.82 Total: -24.71 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.69 -7.43 -44.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599624861.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.942 kcal (2) G-P(sol) polarization free energy of solvation -36.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds