Wall clock time and date at job start Tue Mar 31 2020 04:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00297 * 2 1 4 4 C 1.52993 * 109.47122 * 179.97438 * 3 2 1 5 5 N 1.46896 * 109.47116 * 65.00345 * 4 3 2 6 6 C 1.46894 * 111.00370 * 66.04508 * 5 4 3 7 7 C 1.46904 * 111.00000 * 190.00104 * 5 4 3 8 8 C 1.53001 * 109.47231 * 169.99546 * 7 5 4 9 9 N 1.46503 * 109.46836 * 179.97438 * 8 7 5 10 10 C 1.34780 * 119.99662 * 180.02562 * 9 8 7 11 11 O 1.21581 * 120.00089 * 354.92306 * 10 9 8 12 12 N 1.34774 * 119.99633 * 175.19700 * 10 9 8 13 13 C 1.47081 * 120.87815 * 184.43638 * 12 10 9 14 14 C 1.53694 * 108.27814 * 128.75300 * 13 12 10 15 15 N 1.46897 * 109.25719 * 54.08280 * 14 13 12 16 16 C 1.46894 * 111.00511 * 172.60739 * 15 14 13 17 17 C 1.50702 * 109.47090 * 294.30409 * 16 15 14 18 18 H 1.07997 * 119.99963 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00192 * 179.97438 * 17 16 15 20 20 N 1.31522 * 119.99689 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00154 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46546 * 90.00232 * 21 19 17 23 23 H 1.48493 * 109.47124 * 210.00084 * 21 19 17 24 24 H 1.48498 * 109.47093 * 330.00329 * 21 19 17 25 25 C 1.46904 * 111.26796 * 296.75582 * 15 14 13 26 26 C 1.47078 * 120.88580 * 4.71390 * 12 10 9 27 27 H 1.08998 * 109.47297 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47141 * 300.00594 * 1 2 3 29 29 H 1.09000 * 109.46923 * 60.00088 * 1 2 3 30 30 H 1.09000 * 109.47017 * 59.99810 * 3 2 1 31 31 H 1.09001 * 109.47002 * 299.99743 * 3 2 1 32 32 H 1.09002 * 109.47055 * 304.99834 * 4 3 2 33 33 H 1.09003 * 109.46791 * 184.99949 * 4 3 2 34 34 H 1.09000 * 109.47177 * 183.95269 * 6 5 4 35 35 H 1.09003 * 109.46969 * 303.94994 * 6 5 4 36 36 H 1.08997 * 109.47307 * 63.95322 * 6 5 4 37 37 H 1.09002 * 109.47058 * 49.99244 * 7 5 4 38 38 H 1.08999 * 109.46764 * 289.99761 * 7 5 4 39 39 H 1.08996 * 109.46823 * 60.00283 * 8 7 5 40 40 H 1.08997 * 109.46919 * 299.99901 * 8 7 5 41 41 H 0.96993 * 120.00327 * 0.02562 * 9 8 7 42 42 H 1.09002 * 109.63018 * 248.51866 * 13 12 10 43 43 H 1.09001 * 109.63196 * 9.10190 * 13 12 10 44 44 H 1.08993 * 109.65015 * 294.08090 * 14 13 12 45 45 H 1.09000 * 109.42046 * 173.94552 * 14 13 12 46 46 H 1.09002 * 109.47044 * 54.30158 * 16 15 14 47 47 H 1.08998 * 109.47782 * 174.29998 * 16 15 14 48 48 H 0.96999 * 119.99180 * 180.02562 * 20 19 17 49 49 H 1.08997 * 109.49477 * 303.14367 * 25 15 14 50 50 H 1.08997 * 109.49313 * 183.05854 * 25 15 14 51 51 H 1.09003 * 109.62597 * 350.89567 * 26 12 10 52 52 H 1.08993 * 109.63151 * 111.47962 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9779 0.5622 -1.2543 6 6 3.6970 1.4346 -2.4022 7 6 5.4036 0.2131 -1.1948 8 6 5.7685 -0.6490 -2.4050 9 7 7.1905 -0.9965 -2.3459 10 6 7.7394 -1.7557 -3.3150 11 8 7.0374 -2.2286 -4.1877 12 7 9.0657 -1.9950 -3.3133 13 6 9.6999 -2.7387 -4.4124 14 6 10.8965 -1.9194 -4.9213 15 7 11.7827 -1.6039 -3.7931 16 6 13.0251 -0.9741 -4.2594 17 6 13.8134 -1.9637 -5.0782 18 1 13.4300 -2.9609 -5.2360 19 6 15.0241 -1.5959 -5.6260 20 7 15.4908 -0.3813 -5.4343 21 14 16.0015 -2.8228 -6.6403 22 1 15.6045 -2.7130 -8.0671 23 1 17.4516 -2.5322 -6.5062 24 1 15.7254 -4.1985 -6.1541 25 6 11.1035 -0.7583 -2.8023 26 6 9.9164 -1.5248 -2.2094 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8507 0.5684 0.8427 33 1 3.9785 2.1764 0.0902 34 1 3.9698 0.9211 -3.3242 35 1 2.6345 1.6776 -2.4225 36 1 4.2780 2.3524 -2.3119 37 1 5.6036 -0.3430 -0.2789 38 1 6.0014 1.1245 -1.2043 39 1 5.5686 -0.0927 -3.3208 40 1 5.1706 -1.5603 -2.3954 41 1 7.7369 -0.6804 -1.6095 42 1 10.0436 -3.7072 -4.0488 43 1 8.9821 -2.8813 -5.2201 44 1 10.5410 -0.9940 -5.3743 45 1 11.4446 -2.5006 -5.6628 46 1 12.7843 -0.1055 -4.8724 47 1 13.6178 -0.6594 -3.4005 48 1 16.3424 -0.1226 -5.8200 49 1 10.7451 0.1510 -3.2848 50 1 11.8017 -0.4975 -2.0069 51 1 9.3417 -0.8644 -1.5600 52 1 10.2804 -2.3787 -1.6383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601571581.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:00 Heat of formation + Delta-G solvation = -44.178053 kcal Electronic energy + Delta-G solvation = -28275.172166 eV Core-core repulsion = 24310.813095 eV Total energy + Delta-G solvation = -3964.359071 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.226 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.21485 -38.93834 -37.77358 -37.22236 -34.74718 -34.34093 -32.39264 -31.15342 -30.49736 -28.89142 -27.91530 -26.94101 -25.97518 -25.28561 -23.29270 -22.49441 -22.03024 -21.26322 -20.68947 -19.23587 -17.89753 -16.99588 -16.97020 -16.40808 -16.13149 -15.94706 -15.60111 -15.29454 -15.10825 -14.79371 -14.49779 -14.25395 -14.13105 -13.93552 -13.79171 -13.71369 -13.45449 -12.94199 -12.81959 -12.49431 -12.26244 -12.16079 -12.04993 -11.98479 -11.76206 -11.42248 -11.28946 -11.21849 -11.10974 -10.81990 -10.74094 -10.61235 -10.49700 -10.01630 -9.97116 -9.83999 -9.26947 -9.10220 -8.72855 -8.48187 -8.29502 -7.31888 -6.06124 -4.07771 2.65886 3.30916 3.35082 3.37288 3.38327 3.41580 3.51511 4.04999 4.39604 4.48336 4.55195 4.69895 4.76721 4.79150 4.88547 4.93448 4.98970 5.04176 5.07604 5.19753 5.21032 5.22430 5.28991 5.32397 5.37121 5.39296 5.44109 5.58043 5.66567 5.72952 5.80922 5.85143 5.96393 6.05867 6.19908 6.41219 6.44100 6.56529 6.57578 6.64491 6.71351 6.84533 7.08128 7.22269 7.28419 7.74810 8.00754 8.04045 8.13119 8.48042 8.71977 8.99653 9.56890 11.04693 Molecular weight = 328.23amu Principal moments of inertia in cm(-1) A = 0.035047 B = 0.001769 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.733585 B =15820.753527 C =16157.460973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.064 3.936 4 C 0.056 3.944 5 N -0.529 5.529 6 C 0.015 3.985 7 C 0.046 3.954 8 C 0.143 3.857 9 N -0.751 5.751 10 C 0.709 3.291 11 O -0.595 6.595 12 N -0.626 5.626 13 C 0.133 3.867 14 C 0.051 3.949 15 N -0.534 5.534 16 C 0.194 3.806 17 C -0.509 4.509 18 H 0.065 0.935 19 C 0.056 3.944 20 N -0.898 5.898 21 Si 0.899 3.101 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.272 1.272 25 C 0.041 3.959 26 C 0.119 3.881 27 H 0.085 0.915 28 H 0.037 0.963 29 H 0.039 0.961 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.027 0.973 37 H 0.082 0.918 38 H 0.040 0.960 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.394 0.606 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.024 0.976 45 H 0.097 0.903 46 H -0.009 1.009 47 H 0.031 0.969 48 H 0.261 0.739 49 H 0.026 0.974 50 H 0.080 0.920 51 H 0.068 0.932 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.839 5.481 13.166 29.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.292 6.292 3 C -0.013 4.013 4 C -0.072 4.072 5 N -0.253 5.253 6 C -0.133 4.133 7 C -0.083 4.083 8 C 0.018 3.982 9 N -0.410 5.410 10 C 0.410 3.590 11 O -0.473 6.473 12 N -0.363 5.363 13 C 0.010 3.990 14 C -0.078 4.078 15 N -0.260 5.260 16 C 0.069 3.931 17 C -0.548 4.548 18 H 0.083 0.917 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.726 3.274 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.197 1.197 25 C -0.089 4.089 26 C -0.005 4.005 27 H 0.104 0.896 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.045 0.955 37 H 0.100 0.900 38 H 0.058 0.942 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.230 0.770 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.042 0.958 45 H 0.115 0.885 46 H 0.009 0.991 47 H 0.049 0.951 48 H 0.071 0.929 49 H 0.044 0.956 50 H 0.098 0.902 51 H 0.087 0.913 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -26.232 4.224 12.633 29.420 hybrid contribution 1.005 1.554 -0.407 1.895 sum -25.227 5.778 12.226 28.623 Atomic orbital electron populations 1.22735 0.81525 1.02798 0.99572 1.88015 1.19015 1.26987 1.95232 1.22582 0.93315 0.85435 0.99991 1.22154 0.93832 0.98282 0.92903 1.61776 1.16692 1.43882 1.02966 1.22562 1.01485 0.94923 0.94303 1.22255 0.88131 0.98682 0.99217 1.21047 0.80296 0.99463 0.97384 1.45156 1.11046 1.57091 1.27722 1.15767 0.81928 0.79230 0.82065 1.90892 1.60535 1.56158 1.39743 1.47408 1.05014 1.59100 1.24757 1.21832 0.94023 0.94462 0.88641 1.22455 0.92619 0.98625 0.94145 1.62073 1.05815 1.44880 1.13194 1.19727 0.84737 0.93465 0.95205 1.21151 1.03841 0.98793 1.30986 0.91733 1.24994 0.97558 0.95391 0.96635 1.69962 1.20299 1.18189 1.45346 0.86486 0.79055 0.81497 0.80327 1.20722 1.21284 1.19711 1.22383 0.95137 0.94173 0.97220 1.21759 0.91452 0.98690 0.88583 0.89610 0.94443 0.94277 0.93029 0.93117 0.89613 0.93137 0.90565 0.91200 0.95460 0.89987 0.94181 0.91849 0.90622 0.77014 0.91129 0.89362 0.95772 0.88490 0.99149 0.95069 0.92912 0.95605 0.90157 0.91343 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.37 -3.32 10.65 -35.23 -0.38 -3.69 16 3 C 0.06 0.41 6.00 37.15 0.22 0.63 16 4 C 0.06 0.37 5.34 -3.83 -0.02 0.35 16 5 N -0.53 -4.37 4.71 -242.92 -1.14 -5.52 16 6 C 0.02 0.11 9.13 60.06 0.55 0.66 16 7 C 0.05 0.36 5.07 -3.82 -0.02 0.34 16 8 C 0.14 1.55 5.60 -4.04 -0.02 1.52 16 9 N -0.75 -8.94 5.47 -65.23 -0.36 -9.30 16 10 C 0.71 11.36 8.31 -86.92 -0.72 10.64 16 11 O -0.59 -11.68 15.83 5.29 0.08 -11.60 16 12 N -0.63 -9.78 3.00 -177.91 -0.53 -10.31 16 13 C 0.13 2.25 6.61 -3.36 -0.02 2.23 16 14 C 0.05 0.98 5.47 -3.46 -0.02 0.97 16 15 N -0.53 -11.05 4.62 -235.47 -1.09 -12.14 16 16 C 0.19 4.90 4.72 -4.98 -0.02 4.88 16 17 C -0.51 -13.97 8.41 -34.44 -0.29 -14.25 16 18 H 0.06 1.74 7.13 -52.49 -0.37 1.37 16 19 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -26.32 13.29 55.43 0.74 -25.59 16 21 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 25 C 0.04 0.67 5.62 -3.70 -0.02 0.65 16 26 C 0.12 1.59 6.59 -3.60 -0.02 1.56 16 27 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.30 6.26 -51.93 -0.33 -0.03 16 32 H 0.09 0.57 7.93 -51.93 -0.41 0.16 16 33 H 0.05 0.27 8.12 -51.93 -0.42 -0.15 16 34 H 0.08 0.63 6.47 -51.93 -0.34 0.29 16 35 H 0.07 0.46 6.21 -51.93 -0.32 0.14 16 36 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.08 0.60 7.93 -51.93 -0.41 0.19 16 38 H 0.04 0.29 8.12 -51.93 -0.42 -0.13 16 39 H 0.06 0.75 6.55 -51.93 -0.34 0.41 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.39 3.70 5.97 -40.82 -0.24 3.45 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.09 1.51 7.09 -51.93 -0.37 1.15 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.10 2.00 6.67 -51.93 -0.35 1.65 16 46 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 47 H 0.03 0.84 7.97 -51.93 -0.41 0.42 16 48 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 49 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.08 1.27 7.99 -51.93 -0.41 0.85 16 51 H 0.07 0.68 5.64 -51.93 -0.29 0.39 16 52 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 405.67 15.07 6.11 6.11 Total: -1.00 -33.64 405.67 -10.21 -43.85 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -9.23 Total: -1.11 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: 0.60 Total: 12.94 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: -2.39 Total: -62.86 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.29 Total: -15.29 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.64 -10.21 -43.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601571581.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.327 kcal (2) G-P(sol) polarization free energy of solvation -33.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds