Wall clock time and date at job start Tue Mar 31 2020 05:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46495 * 109.47522 * 2 1 4 4 C 1.37101 * 119.99685 * 272.81588 * 3 2 1 5 5 H 1.08004 * 119.99833 * 180.52704 * 4 3 2 6 6 C 1.38946 * 120.00415 * 0.53154 * 4 3 2 7 7 N 1.31408 * 119.99942 * 27.68719 * 6 4 3 8 8 Si 1.86801 * 120.00041 * 207.69458 * 6 4 3 9 9 H 1.48501 * 109.47049 * 89.99455 * 8 6 4 10 10 H 1.48495 * 109.47424 * 209.99695 * 8 6 4 11 11 H 1.48500 * 109.47155 * 329.99614 * 8 6 4 12 12 C 1.34770 * 120.00127 * 92.81701 * 3 2 1 13 13 O 1.21288 * 119.99958 * 5.67972 * 12 3 2 14 14 C 1.50702 * 120.00033 * 185.68752 * 12 3 2 15 15 H 1.09001 * 108.89432 * 27.23760 * 14 12 3 16 16 C 1.54212 * 108.92102 * 268.56906 * 14 12 3 17 17 S 1.83817 * 102.86327 * 264.43520 * 16 14 12 18 18 O 1.42106 * 109.81142 * 77.68834 * 17 16 14 19 19 O 1.42099 * 109.81284 * 211.99742 * 17 16 14 20 20 C 1.83818 * 94.23841 * 324.86234 * 17 16 14 21 21 C 1.52385 * 108.82144 * 145.85043 * 14 12 3 22 22 H 1.09005 * 108.92402 * 359.92405 * 21 14 12 23 23 C 1.52994 * 108.92529 * 241.41118 * 21 14 12 24 24 F 1.39901 * 109.47482 * 59.99674 * 23 21 14 25 25 F 1.39897 * 109.47471 * 179.97438 * 23 21 14 26 26 F 1.39905 * 109.47004 * 300.00042 * 23 21 14 27 27 H 1.08999 * 109.47015 * 292.83748 * 1 2 3 28 28 H 1.09005 * 109.47141 * 52.83037 * 1 2 3 29 29 H 1.08995 * 109.47860 * 172.83665 * 1 2 3 30 30 H 1.09001 * 109.46890 * 239.99686 * 2 1 3 31 31 H 1.08997 * 109.47354 * 120.00508 * 2 1 3 32 32 H 0.97005 * 119.99814 * 180.02562 * 7 6 4 33 33 H 1.08995 * 110.73592 * 22.78034 * 16 14 12 34 34 H 1.09005 * 110.73420 * 146.09112 * 16 14 12 35 35 H 1.08998 * 110.73980 * 153.47985 * 20 17 16 36 36 H 1.08998 * 110.73452 * 276.79474 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1919 2.0468 -1.1859 5 1 2.5601 3.0621 -1.1864 6 6 1.8940 1.4153 -2.3872 7 7 0.9848 0.4673 -2.4234 8 14 2.7863 1.9138 -3.9508 9 1 4.0108 1.0883 -4.1066 10 1 1.8943 1.7016 -5.1189 11 1 3.1631 3.3480 -3.8699 12 6 2.2971 1.9973 1.1657 13 8 2.2428 1.3780 2.2072 14 6 2.6760 3.4559 1.1753 15 1 2.2242 3.9436 0.3115 16 6 4.2101 3.5747 1.0712 17 16 4.7281 3.7356 2.8275 18 8 4.6979 2.4620 3.4571 19 8 5.8900 4.5491 2.9143 20 6 3.2473 4.7081 3.3174 21 6 2.1315 4.0970 2.4459 22 1 1.6044 3.3396 3.0262 23 6 1.1425 5.1992 2.0611 24 9 0.0910 4.6454 1.3230 25 9 0.6347 5.7956 3.2201 26 9 1.7973 6.1640 1.2880 27 1 -0.3633 0.3989 0.9471 28 1 -0.3634 0.6209 -0.8189 29 1 -0.3635 -1.0196 -0.1281 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 0.7771 0.0261 -3.2620 33 1 4.6371 2.6774 0.6235 34 1 4.4908 4.4617 0.5032 35 1 3.0285 4.5710 4.3764 36 1 3.3845 5.7640 3.0842 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602080299.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:25 Heat of formation + Delta-G solvation = -233.596453 kcal Electronic energy + Delta-G solvation = -28655.000512 eV Core-core repulsion = 24045.813077 eV Total energy + Delta-G solvation = -4609.187435 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.074 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.04930 -47.53793 -47.44542 -39.41654 -36.95468 -36.25347 -35.83512 -34.89167 -31.78496 -30.97953 -29.41761 -27.17312 -25.16347 -24.67010 -22.46688 -20.84178 -19.39471 -18.96745 -18.58412 -18.17759 -17.82584 -17.13950 -16.14665 -16.08887 -15.76985 -15.56448 -14.70358 -14.53464 -14.49453 -14.36839 -14.19270 -13.91497 -13.66123 -13.63302 -13.52854 -13.29352 -12.86130 -12.69199 -12.33386 -12.26236 -12.06054 -11.92012 -11.85284 -11.72937 -11.45203 -11.29695 -11.12477 -10.79917 -10.63484 -10.52653 -10.42041 -10.13949 -9.79311 -9.01849 -8.61790 -8.02879 -6.60020 -4.03057 0.10751 2.44550 2.78135 2.95779 3.10587 3.11851 3.32037 3.64620 3.70870 3.88682 3.91071 4.01766 4.26162 4.45787 4.59359 4.63923 4.72221 4.87557 4.98739 5.27794 5.36104 5.55146 5.85073 5.89029 5.96364 6.44193 6.68718 6.73700 6.94130 7.16175 7.26618 7.52023 7.71553 8.21768 8.85265 9.28533 9.69463 10.35968 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.012710 B = 0.005870 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.386410 B = 4768.547479 C = 5193.864570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.130 3.870 3 N -0.421 5.421 4 C -0.352 4.352 5 H 0.105 0.895 6 C 0.045 3.955 7 N -0.839 5.839 8 Si 0.913 3.087 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.268 1.268 12 C 0.438 3.562 13 O -0.590 6.590 14 C -0.098 4.098 15 H 0.126 0.874 16 C -0.552 4.552 17 S 2.383 3.617 18 O -0.898 6.898 19 O -0.941 6.941 20 C -0.584 4.584 21 C -0.119 4.119 22 H 0.152 0.848 23 C 0.461 3.539 24 F -0.170 7.170 25 F -0.182 7.182 26 F -0.182 7.182 27 H 0.020 0.980 28 H 0.090 0.910 29 H 0.037 0.963 30 H 0.091 0.909 31 H 0.048 0.952 32 H 0.271 0.729 33 H 0.149 0.851 34 H 0.143 0.857 35 H 0.148 0.852 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.746 7.915 4.399 9.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.008 3.992 3 N -0.137 5.137 4 C -0.479 4.479 5 H 0.122 0.878 6 C -0.162 4.162 7 N -0.475 5.475 8 Si 0.738 3.262 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.193 1.193 12 C 0.225 3.775 13 O -0.477 6.477 14 C -0.120 4.120 15 H 0.144 0.856 16 C -0.682 4.682 17 S 2.564 3.436 18 O -0.895 6.895 19 O -0.938 6.938 20 C -0.711 4.711 21 C -0.140 4.140 22 H 0.170 0.830 23 C 0.406 3.594 24 F -0.151 7.151 25 F -0.164 7.164 26 F -0.163 7.163 27 H 0.039 0.961 28 H 0.108 0.892 29 H 0.056 0.944 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.167 0.833 34 H 0.161 0.839 35 H 0.167 0.833 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.379 7.131 5.239 9.163 hybrid contribution -0.707 0.805 -1.588 1.915 sum 1.673 7.935 3.650 8.894 Atomic orbital electron populations 1.21980 0.96321 1.00624 1.00589 1.21331 0.94681 0.82491 1.00745 1.43799 1.53395 1.11915 1.04604 1.19703 1.45342 1.00200 0.82641 0.87770 1.25203 0.94978 0.96536 0.99480 1.70271 1.24623 1.24863 1.27734 0.86159 0.79792 0.79381 0.80819 1.20063 1.20880 1.19258 1.19268 0.86289 0.87440 0.84512 1.90638 1.59997 1.65748 1.31314 1.21168 0.93917 0.99284 0.97657 0.85612 1.30276 1.02405 1.12574 1.22985 1.09490 0.76927 0.76757 0.80426 1.93719 1.86238 1.37048 1.72516 1.93598 1.44159 1.70109 1.85946 1.30511 1.17324 1.14018 1.09268 1.22535 0.96580 0.96708 0.98176 0.83044 1.20346 0.81586 0.82780 0.74698 1.93261 1.59282 1.85027 1.77550 1.93167 1.88416 1.85350 1.49423 1.93164 1.80886 1.66143 1.76119 0.96051 0.89157 0.94445 0.89087 0.93378 0.91806 0.83289 0.83916 0.83334 0.83985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.47 37.15 0.35 -2.66 16 2 C 0.13 2.99 5.45 -4.05 -0.02 2.97 16 3 N -0.42 -9.70 2.63 -114.82 -0.30 -10.01 16 4 C -0.35 -8.00 9.13 -14.93 -0.14 -8.13 16 5 H 0.10 2.19 5.95 -52.48 -0.31 1.88 16 6 C 0.05 1.03 4.96 -17.47 -0.09 0.94 16 7 N -0.84 -19.54 8.22 55.50 0.46 -19.08 16 8 Si 0.91 17.80 29.63 -169.99 -5.04 12.77 16 9 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 10 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 11 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 12 C 0.44 9.46 6.33 -10.99 -0.07 9.39 16 13 O -0.59 -14.06 14.83 5.55 0.08 -13.98 16 14 C -0.10 -1.65 1.53 -91.45 -0.14 -1.78 16 15 H 0.13 2.12 5.12 -51.93 -0.27 1.86 16 16 C -0.55 -7.77 6.85 37.79 0.26 -7.51 16 17 S 2.38 33.58 6.08 -107.50 -0.65 32.93 16 18 O -0.90 -16.50 17.79 -58.51 -1.04 -17.54 16 19 O -0.94 -14.65 18.17 -57.67 -1.05 -15.70 16 20 C -0.58 -6.73 6.48 37.79 0.24 -6.49 16 21 C -0.12 -1.75 2.17 -90.31 -0.20 -1.95 16 22 H 0.15 2.41 6.68 -51.93 -0.35 2.06 16 23 C 0.46 6.64 2.42 37.15 0.09 6.73 16 24 F -0.17 -2.84 16.78 2.25 0.04 -2.80 16 25 F -0.18 -2.47 16.95 2.25 0.04 -2.43 16 26 F -0.18 -2.46 16.14 2.25 0.04 -2.43 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.09 2.15 6.27 -51.93 -0.33 1.82 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 2.16 6.02 -51.93 -0.31 1.85 16 31 H 0.05 1.12 7.27 -51.93 -0.38 0.74 16 32 H 0.27 6.01 8.31 -40.82 -0.34 5.68 16 33 H 0.15 2.19 7.80 -51.93 -0.40 1.78 16 34 H 0.14 1.51 8.14 -51.93 -0.42 1.08 16 35 H 0.15 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.14 1.29 7.39 -51.93 -0.38 0.91 16 LS Contribution 316.69 15.07 4.77 4.77 Total: -1.00 -30.07 316.69 -5.92 -35.99 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -3.56 Total: 6.01 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 0.30 Total: -8.49 kcal Atomic # 7 Polarization: -29.24 SS G_CDS: 0.15 Total: -29.09 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: -2.01 Total: -47.22 kcal Atomic # 9 Polarization: -7.77 SS G_CDS: 0.11 Total: -7.66 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.04 Total: 12.77 kcal Atomic # 16 Polarization: 33.58 SS G_CDS: -0.65 Total: 32.93 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.07 -5.92 -35.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602080299.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.607 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds