Wall clock time and date at job start Tue Mar 31 2020 05:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46935 * 2 1 4 4 C 1.37088 * 119.99912 * 275.04768 * 3 2 1 5 5 H 1.07996 * 120.00324 * 145.99855 * 4 3 2 6 6 C 1.38958 * 120.00344 * 325.99599 * 4 3 2 7 7 N 1.31416 * 119.99373 * 338.51319 * 6 4 3 8 8 Si 1.86791 * 120.00259 * 158.51429 * 6 4 3 9 9 H 1.48500 * 109.47297 * 90.00088 * 8 6 4 10 10 H 1.48504 * 109.47083 * 209.99874 * 8 6 4 11 11 H 1.48500 * 109.47315 * 329.99863 * 8 6 4 12 12 C 1.34773 * 119.99894 * 95.04493 * 3 2 1 13 13 O 1.21294 * 120.00018 * 185.42888 * 12 3 2 14 14 C 1.50700 * 120.00301 * 5.44035 * 12 3 2 15 15 H 1.09005 * 110.00974 * 342.76219 * 14 12 3 16 16 C 1.55048 * 110.03082 * 104.14273 * 14 12 3 17 17 S 1.83281 * 102.56764 * 76.90532 * 16 14 12 18 18 O 1.42101 * 109.35876 * 269.81606 * 17 16 14 19 19 O 1.42097 * 109.35504 * 136.61181 * 17 16 14 20 20 C 1.82917 * 97.01935 * 23.21305 * 17 16 14 21 21 C 1.54019 * 109.99217 * 221.40660 * 14 12 3 22 22 H 1.09001 * 109.61976 * 167.94373 * 21 14 12 23 23 C 1.52996 * 109.74900 * 47.59827 * 21 14 12 24 24 F 1.39895 * 109.47285 * 297.82262 * 23 21 14 25 25 F 1.39895 * 109.46998 * 57.82598 * 23 21 14 26 26 F 1.39907 * 109.47311 * 177.82588 * 23 21 14 27 27 H 1.08998 * 109.46857 * 60.00357 * 1 2 3 28 28 H 1.09004 * 109.46603 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47115 * 300.00069 * 1 2 3 30 30 H 1.08992 * 109.47533 * 239.99711 * 2 1 3 31 31 H 1.09007 * 109.47032 * 119.99415 * 2 1 3 32 32 H 0.97003 * 119.99687 * 180.02562 * 7 6 4 33 33 H 1.09005 * 110.78748 * 318.63361 * 16 14 12 34 34 H 1.09006 * 110.78884 * 195.17359 * 16 14 12 35 35 H 1.09000 * 110.32159 * 121.02264 * 20 17 16 36 36 H 1.09004 * 110.32246 * 243.12133 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1483 2.0623 -1.1826 5 1 1.9643 3.1260 -1.2163 6 6 2.5169 1.3842 -2.3381 7 7 3.1389 0.2298 -2.2522 8 14 2.1282 2.1134 -4.0133 9 1 3.2576 2.9709 -4.4541 10 1 1.9261 1.0178 -4.9953 11 1 0.8919 2.9311 -3.9225 12 6 2.3397 1.9824 1.1627 13 8 2.6495 3.1551 1.1738 14 6 2.3144 1.1976 2.4489 15 1 1.7384 0.2817 2.3158 16 6 3.7607 0.8558 2.8910 17 16 4.3513 2.4454 3.5864 18 8 4.9615 3.2120 2.5572 19 8 5.0520 2.1981 4.7977 20 6 2.7060 3.1465 3.9701 21 6 1.6976 2.0498 3.5738 22 1 1.4848 1.4186 4.4365 23 6 0.4016 2.6966 3.0809 24 9 0.6848 3.5518 2.0107 25 9 -0.4858 1.7005 2.6597 26 9 -0.1795 3.4289 4.1218 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.3966 -0.2435 -3.0588 33 1 4.3669 0.5588 2.0351 34 1 3.7583 0.0769 3.6536 35 1 2.6271 3.3663 5.0348 36 1 2.5332 4.0493 3.3842 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602080300.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:27 Heat of formation + Delta-G solvation = -231.394196 kcal Electronic energy + Delta-G solvation = -29335.187270 eV Core-core repulsion = 24726.095331 eV Total energy + Delta-G solvation = -4609.091938 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.074 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.86024 -47.43133 -47.16300 -39.41238 -36.76356 -36.21279 -35.68959 -34.78018 -32.10806 -30.47165 -29.55893 -27.08657 -25.66242 -23.98990 -22.36830 -21.75940 -19.08231 -18.78029 -18.35953 -17.97316 -17.37892 -17.27280 -16.73001 -15.80745 -15.51304 -15.43792 -14.89036 -14.61976 -14.26517 -14.14862 -14.04696 -13.82683 -13.68451 -13.35266 -13.32357 -13.11758 -12.84558 -12.80462 -12.42919 -12.14711 -11.97289 -11.84076 -11.78298 -11.70469 -11.62729 -11.28227 -11.09608 -10.94988 -10.55913 -10.46131 -10.38834 -10.25081 -9.97779 -9.05369 -8.55386 -7.55873 -6.40231 -4.03400 0.21313 2.57233 2.92928 3.10441 3.22709 3.28244 3.40439 3.62394 3.85491 3.98077 4.03508 4.12280 4.34737 4.49168 4.65037 4.66649 4.78392 4.88286 5.00403 5.20441 5.36899 5.45706 5.53395 5.74004 5.78634 5.88376 6.18453 6.26893 6.45109 6.86657 7.21550 7.55414 8.10129 8.38163 9.05247 9.27991 9.81681 10.60821 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.014367 B = 0.006348 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.438606 B = 4409.903384 C = 5308.445780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.078 3.922 3 N -0.420 5.420 4 C -0.302 4.302 5 H 0.097 0.903 6 C 0.037 3.963 7 N -0.868 5.868 8 Si 0.919 3.081 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.269 1.269 12 C 0.436 3.564 13 O -0.548 6.548 14 C -0.116 4.116 15 H 0.128 0.872 16 C -0.569 4.569 17 S 2.402 3.598 18 O -0.896 6.896 19 O -0.950 6.950 20 C -0.590 4.590 21 C -0.107 4.107 22 H 0.130 0.870 23 C 0.456 3.544 24 F -0.144 7.144 25 F -0.181 7.181 26 F -0.188 7.188 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.122 0.878 31 H 0.050 0.950 32 H 0.269 0.731 33 H 0.150 0.850 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.548 -2.806 11.203 12.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.045 4.045 3 N -0.138 5.138 4 C -0.430 4.430 5 H 0.115 0.885 6 C -0.167 4.167 7 N -0.506 5.506 8 Si 0.746 3.254 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.193 1.193 12 C 0.222 3.778 13 O -0.431 6.431 14 C -0.139 4.139 15 H 0.146 0.854 16 C -0.699 4.699 17 S 2.583 3.417 18 O -0.893 6.893 19 O -0.947 6.947 20 C -0.718 4.718 21 C -0.128 4.128 22 H 0.148 0.852 23 C 0.401 3.599 24 F -0.125 7.125 25 F -0.163 7.163 26 F -0.170 7.170 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.139 0.861 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.168 0.832 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.439 -1.978 11.154 11.839 hybrid contribution -1.330 -0.260 -0.971 1.668 sum -4.769 -2.238 10.183 11.465 Atomic orbital electron populations 1.22223 0.97637 1.00407 1.02338 1.21893 0.92707 0.85531 1.04401 1.43392 1.53808 1.11906 1.04659 1.19485 1.45072 0.94775 0.83648 0.88490 1.25340 0.94757 0.96449 1.00179 1.69806 1.34828 1.16211 1.29749 0.86046 0.79395 0.78675 0.81328 1.20157 1.20803 1.19337 1.19814 0.84460 0.88744 0.84824 1.90661 1.51488 1.15174 1.85735 1.22174 0.95310 1.01541 0.94867 0.85433 1.30532 1.04535 1.21347 1.13465 1.08768 0.77840 0.79275 0.75811 1.93703 1.72281 1.66895 1.56426 1.93582 1.69871 1.85194 1.46097 1.30653 1.20200 1.09596 1.11350 1.22631 0.92629 0.96754 1.00770 0.85170 1.20182 0.85624 0.77662 0.76450 1.93428 1.92788 1.70849 1.55420 1.93141 1.71379 1.61356 1.90376 1.93155 1.86323 1.78747 1.58739 0.92192 0.93196 0.93203 0.86057 0.93162 0.92068 0.83160 0.84019 0.84170 0.82123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 10.21 37.16 0.38 -2.57 16 2 C 0.08 1.57 5.51 -4.04 -0.02 1.55 16 3 N -0.42 -9.81 2.55 -114.81 -0.29 -10.10 16 4 C -0.30 -7.96 8.99 -14.93 -0.13 -8.10 16 5 H 0.10 2.71 7.65 -52.49 -0.40 2.31 16 6 C 0.04 0.93 5.03 -17.46 -0.09 0.84 16 7 N -0.87 -22.11 11.16 55.50 0.62 -21.49 16 8 Si 0.92 20.12 29.60 -169.99 -5.03 15.09 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 12 C 0.44 9.38 4.84 -10.99 -0.05 9.33 16 13 O -0.55 -13.29 10.59 -11.69 -0.12 -13.41 16 14 C -0.12 -1.79 2.11 -90.16 -0.19 -1.98 16 15 H 0.13 1.73 5.69 -51.93 -0.30 1.43 16 16 C -0.57 -7.59 6.75 38.24 0.26 -7.33 16 17 S 2.40 36.56 5.57 -107.50 -0.60 35.96 16 18 O -0.90 -18.40 16.80 -64.90 -1.09 -19.49 16 19 O -0.95 -15.27 18.15 -57.71 -1.05 -16.32 16 20 C -0.59 -7.77 5.70 37.77 0.22 -7.55 16 21 C -0.11 -1.40 2.48 -89.48 -0.22 -1.62 16 22 H 0.13 1.10 8.14 -51.93 -0.42 0.67 16 23 C 0.46 7.07 2.51 37.16 0.09 7.17 16 24 F -0.14 -2.83 12.27 2.25 0.03 -2.80 16 25 F -0.18 -2.78 14.83 2.25 0.03 -2.75 16 26 F -0.19 -2.68 17.12 2.25 0.04 -2.64 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.84 5.87 -51.93 -0.30 0.53 16 30 H 0.12 2.72 5.25 -51.93 -0.27 2.45 16 31 H 0.05 0.85 5.73 -51.93 -0.30 0.56 16 32 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 33 H 0.15 2.19 8.08 -51.93 -0.42 1.77 16 34 H 0.14 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.14 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.16 2.43 6.47 -51.93 -0.34 2.10 16 LS Contribution 307.84 15.07 4.64 4.64 Total: -1.00 -33.51 307.84 -6.17 -39.67 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -3.58 Total: 3.91 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 0.24 Total: -10.27 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: 0.33 Total: -31.59 kcal Atomic # 8 Polarization: -46.95 SS G_CDS: -2.26 Total: -49.22 kcal Atomic # 9 Polarization: -8.29 SS G_CDS: 0.10 Total: -8.19 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.09 kcal Atomic # 16 Polarization: 36.56 SS G_CDS: -0.60 Total: 35.96 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.51 -6.17 -39.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602080300.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -191.721 kcal (2) G-P(sol) polarization free energy of solvation -33.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds