Wall clock time and date at job start Tue Mar 31 2020 05:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46499 * 109.47088 * 2 1 4 4 C 1.37101 * 119.99845 * 267.26578 * 3 2 1 5 5 H 1.07997 * 119.99927 * 143.37341 * 4 3 2 6 6 C 1.38949 * 120.00226 * 323.36313 * 4 3 2 7 7 N 1.31408 * 119.99953 * 332.81730 * 6 4 3 8 8 Si 1.86798 * 119.99979 * 152.80618 * 6 4 3 9 9 H 1.48505 * 109.46919 * 60.00622 * 8 6 4 10 10 H 1.48497 * 109.47139 * 300.00948 * 8 6 4 11 11 H 1.48495 * 109.47305 * 180.02562 * 8 6 4 12 12 C 1.34779 * 120.00057 * 87.27177 * 3 2 1 13 13 O 1.21289 * 120.00079 * 183.40980 * 12 3 2 14 14 C 1.50700 * 119.99959 * 3.40121 * 12 3 2 15 15 H 1.09005 * 108.89188 * 322.68669 * 14 12 3 16 16 C 1.54203 * 108.92540 * 81.35409 * 14 12 3 17 17 S 1.83499 * 103.00674 * 95.66849 * 16 14 12 18 18 O 1.42102 * 109.79829 * 282.30947 * 17 16 14 19 19 O 1.42108 * 109.87004 * 147.95842 * 17 16 14 20 20 C 1.83820 * 94.22369 * 35.12628 * 17 16 14 21 21 C 1.52376 * 108.92690 * 204.01529 * 14 12 3 22 22 H 1.09000 * 108.92692 * 0.02562 * 21 14 12 23 23 C 1.53004 * 108.92811 * 118.64840 * 21 14 12 24 24 F 1.39904 * 109.46571 * 59.99933 * 23 21 14 25 25 F 1.39900 * 109.47252 * 179.97438 * 23 21 14 26 26 F 1.39895 * 109.46779 * 300.00312 * 23 21 14 27 27 H 1.09006 * 109.47241 * 65.32767 * 1 2 3 28 28 H 1.09003 * 109.47686 * 185.33271 * 1 2 3 29 29 H 1.09000 * 109.47437 * 305.33142 * 1 2 3 30 30 H 1.09001 * 109.46868 * 240.00112 * 2 1 3 31 31 H 1.08996 * 109.47249 * 119.99892 * 2 1 3 32 32 H 0.97003 * 120.00173 * 353.90953 * 7 6 4 33 33 H 1.08999 * 110.73623 * 214.04281 * 16 14 12 34 34 H 1.09006 * 110.73805 * 337.35866 * 16 14 12 35 35 H 1.08999 * 110.73407 * 206.53875 * 20 17 16 36 36 H 1.08994 * 110.88957 * 83.29283 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3001 2.0086 -1.1860 5 1 2.0855 3.0603 -1.3049 6 6 2.8622 1.2914 -2.2350 7 7 3.5995 0.2325 -1.9862 8 14 2.5694 1.8323 -3.9988 9 1 3.0901 3.2103 -4.1869 10 1 1.1131 1.8097 -4.2882 11 1 3.2719 0.9068 -4.9235 12 6 2.1905 2.0351 1.1659 13 8 2.5354 3.1979 1.1638 14 6 1.9544 1.3215 2.4721 15 1 1.1046 0.6484 2.3579 16 6 3.2062 0.4917 2.8220 17 16 4.1381 1.6039 3.9454 18 8 4.8045 2.6046 3.1880 19 8 4.8545 0.8346 4.9016 20 6 2.6280 2.3107 4.7195 21 6 1.6281 2.3518 3.5462 22 1 1.6469 3.3460 3.0999 23 6 0.2227 2.0782 4.0857 24 9 0.1762 0.7921 4.6346 25 9 -0.0886 3.0181 5.0741 26 9 -0.7041 2.1736 3.0422 27 1 -0.3634 0.4290 -0.9339 28 1 -0.3634 -1.0232 0.0955 29 1 -0.3634 0.5943 0.8384 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8248 0.0024 -1.0712 33 1 2.9279 -0.4288 3.3351 34 1 3.7883 0.2748 1.9263 35 1 2.8217 3.3147 5.0969 36 1 2.2611 1.6643 5.5167 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602080302.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:31 Heat of formation + Delta-G solvation = -245.511217 kcal Electronic energy + Delta-G solvation = -28702.739754 eV Core-core repulsion = 24093.035655 eV Total energy + Delta-G solvation = -4609.704098 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.074 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.25391 -47.71975 -47.67483 -39.66805 -37.08038 -36.36434 -35.95967 -35.14581 -32.26721 -30.64428 -29.67821 -27.38767 -25.50280 -24.32920 -22.63109 -21.47311 -19.53521 -19.13792 -18.62821 -18.37600 -17.88344 -17.45505 -16.54659 -16.14621 -15.90289 -15.69632 -15.08730 -14.68475 -14.57436 -14.48271 -14.11970 -13.99279 -13.88137 -13.82289 -13.78260 -13.39492 -13.31938 -13.16129 -12.58360 -12.52429 -12.30078 -12.11135 -11.97556 -11.82370 -11.58972 -11.43032 -11.16393 -11.00216 -10.76966 -10.54480 -10.34624 -10.27043 -9.99365 -9.05693 -8.68127 -7.89925 -6.74114 -4.12319 -0.04180 2.30076 2.58754 3.09470 3.29066 3.30446 3.48914 3.52438 3.57016 3.74542 3.76254 4.05749 4.12732 4.36675 4.43660 4.48128 4.60944 4.71965 4.82211 5.09628 5.18477 5.31750 5.40259 5.55421 5.59956 5.67895 5.90033 5.98848 6.20084 6.56994 6.72908 7.75681 7.98799 8.44774 8.72740 9.21669 9.62970 10.49144 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.014763 B = 0.005623 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.186476 B = 4978.193617 C = 5964.901007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.079 3.921 3 N -0.436 5.436 4 C -0.398 4.398 5 H 0.088 0.912 6 C 0.013 3.987 7 N -0.868 5.868 8 Si 1.073 2.927 9 H -0.281 1.281 10 H -0.283 1.283 11 H -0.279 1.279 12 C 0.448 3.552 13 O -0.552 6.552 14 C -0.110 4.110 15 H 0.116 0.884 16 C -0.566 4.566 17 S 2.390 3.610 18 O -0.895 6.895 19 O -0.936 6.936 20 C -0.585 4.585 21 C -0.124 4.124 22 H 0.158 0.842 23 C 0.462 3.538 24 F -0.182 7.182 25 F -0.179 7.179 26 F -0.174 7.174 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.274 0.726 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.021 -2.262 11.647 13.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.045 4.045 3 N -0.155 5.155 4 C -0.525 4.525 5 H 0.106 0.894 6 C -0.195 4.195 7 N -0.502 5.502 8 Si 0.898 3.102 9 H -0.207 1.207 10 H -0.210 1.210 11 H -0.204 1.204 12 C 0.234 3.766 13 O -0.434 6.434 14 C -0.133 4.133 15 H 0.134 0.866 16 C -0.696 4.696 17 S 2.570 3.430 18 O -0.893 6.893 19 O -0.933 6.933 20 C -0.712 4.712 21 C -0.144 4.144 22 H 0.176 0.824 23 C 0.407 3.593 24 F -0.163 7.163 25 F -0.160 7.160 26 F -0.155 7.155 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.164 0.836 34 H 0.167 0.833 35 H 0.169 0.831 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.602 -1.948 10.189 11.348 hybrid contribution -1.586 0.043 1.677 2.309 sum -6.188 -1.905 11.866 13.517 Atomic orbital electron populations 1.22144 0.96787 1.00701 1.02466 1.21754 0.93838 0.85691 1.03243 1.43515 1.55374 1.11868 1.04709 1.20281 1.44678 0.98138 0.89416 0.89404 1.26438 0.92226 0.95484 1.05345 1.70785 1.27894 1.27550 1.23965 0.83450 0.76711 0.76284 0.73753 1.20737 1.20952 1.20435 1.19785 0.83921 0.88611 0.84233 1.90593 1.50562 1.16371 1.85873 1.21363 0.99698 0.96461 0.95758 0.86563 1.30367 1.08943 1.12882 1.17359 1.09313 0.77893 0.78108 0.77671 1.93742 1.69837 1.56328 1.69350 1.93612 1.69066 1.70368 1.60216 1.30544 1.18867 1.15178 1.06580 1.22581 0.89926 1.07161 0.94780 0.82438 1.20329 0.89027 0.74067 0.75860 1.93166 1.96970 1.39801 1.86372 1.93181 1.94199 1.65344 1.63272 1.93230 1.68820 1.95807 1.57647 0.91773 0.92668 0.93398 0.88357 0.92501 0.91576 0.83556 0.83254 0.83081 0.83825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 10.00 37.15 0.37 -2.33 16 2 C 0.08 1.52 4.86 -4.05 -0.02 1.50 16 3 N -0.44 -10.03 2.31 -114.82 -0.26 -10.29 16 4 C -0.40 -10.48 8.85 -14.93 -0.13 -10.61 16 5 H 0.09 2.48 7.77 -52.49 -0.41 2.07 16 6 C 0.01 0.33 4.77 -17.47 -0.08 0.24 16 7 N -0.87 -22.82 12.23 55.50 0.68 -22.14 16 8 Si 1.07 22.83 30.00 -169.99 -5.10 17.73 16 9 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 10 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 11 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 12 C 0.45 9.73 6.48 -10.98 -0.07 9.66 16 13 O -0.55 -13.94 15.22 5.55 0.08 -13.86 16 14 C -0.11 -1.72 1.49 -91.46 -0.14 -1.86 16 15 H 0.12 1.64 4.76 -51.93 -0.25 1.39 16 16 C -0.57 -7.56 5.93 37.79 0.22 -7.33 16 17 S 2.39 33.30 6.07 -107.50 -0.65 32.65 16 18 O -0.90 -16.92 18.16 -57.67 -1.05 -17.97 16 19 O -0.94 -14.30 18.17 -57.67 -1.05 -15.34 16 20 C -0.58 -6.37 6.47 37.79 0.24 -6.13 16 21 C -0.12 -1.72 2.20 -90.30 -0.20 -1.92 16 22 H 0.16 2.45 6.44 -51.93 -0.33 2.12 16 23 C 0.46 5.99 2.41 37.16 0.09 6.08 16 24 F -0.18 -2.15 16.13 2.25 0.04 -2.11 16 25 F -0.18 -2.23 16.94 2.25 0.04 -2.19 16 26 F -0.17 -2.54 16.78 2.25 0.04 -2.51 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.76 7.29 -51.93 -0.38 0.39 16 30 H 0.10 2.11 5.60 -51.93 -0.29 1.82 16 31 H 0.06 0.92 5.79 -51.93 -0.30 0.62 16 32 H 0.27 7.12 7.37 -40.82 -0.30 6.82 16 33 H 0.15 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.15 2.20 7.69 -51.93 -0.40 1.80 16 35 H 0.15 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.14 1.18 7.38 -51.93 -0.38 0.80 16 LS Contribution 319.43 15.07 4.81 4.81 Total: -1.00 -33.95 319.43 -5.66 -39.61 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -3.53 Total: 4.31 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: 0.29 Total: -12.69 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.41 Total: -32.43 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -2.01 Total: -47.17 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 0.11 Total: -6.81 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.10 Total: 17.73 kcal Atomic # 16 Polarization: 33.30 SS G_CDS: -0.65 Total: 32.65 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.95 -5.66 -39.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602080302.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.898 kcal (2) G-P(sol) polarization free energy of solvation -33.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds