Wall clock time and date at job start Tue Mar 31 2020 05:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46503 * 119.99820 * 2 1 4 4 C 1.50703 * 109.47215 * 269.99832 * 3 2 1 5 5 H 1.08005 * 119.99707 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99883 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99970 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 119.99938 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47277 * 90.00012 * 8 6 4 10 10 H 1.48496 * 109.47516 * 210.00332 * 8 6 4 11 11 H 1.48506 * 109.47119 * 330.00072 * 8 6 4 12 12 C 1.34775 * 120.00263 * 179.97438 * 2 1 3 13 13 O 1.21278 * 120.00262 * 180.02562 * 12 2 1 14 14 C 1.50704 * 119.99959 * 0.02562 * 12 2 1 15 15 H 1.08996 * 108.78061 * 57.14387 * 14 12 2 16 16 C 1.54210 * 108.92252 * 298.54495 * 14 12 2 17 17 S 1.83824 * 103.02487 * 264.21108 * 16 14 12 18 18 O 1.42098 * 109.81148 * 77.77532 * 17 16 14 19 19 O 1.42101 * 109.81168 * 212.12897 * 17 16 14 20 20 C 1.84088 * 94.14493 * 325.05975 * 17 16 14 21 21 C 1.52373 * 108.92590 * 175.75467 * 14 12 2 22 22 H 1.09000 * 108.92846 * 0.13494 * 21 14 12 23 23 C 1.53000 * 108.92709 * 241.48268 * 21 14 12 24 24 F 1.39901 * 109.46686 * 60.00312 * 23 21 14 25 25 F 1.39901 * 109.47224 * 179.97438 * 23 21 14 26 26 F 1.39900 * 109.47151 * 300.00350 * 23 21 14 27 27 H 1.08995 * 109.47457 * 269.99840 * 1 2 3 28 28 H 1.08995 * 109.47080 * 30.00463 * 1 2 3 29 29 H 1.08999 * 109.46726 * 149.99775 * 1 2 3 30 30 H 1.09006 * 109.46859 * 30.00027 * 3 2 1 31 31 H 1.09001 * 109.47128 * 149.99678 * 3 2 1 32 32 H 0.96995 * 119.99735 * 180.02562 * 7 6 4 33 33 H 1.09002 * 110.73710 * 22.64552 * 16 14 12 34 34 H 1.09001 * 110.73680 * 145.77916 * 16 14 12 35 35 H 1.08998 * 110.57544 * 276.60904 * 20 17 16 36 36 H 1.09005 * 110.95900 * 153.43695 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1259 2.8780 -1.6727 7 7 3.5532 3.6182 -0.6730 8 14 3.4380 3.4169 -3.4338 9 1 2.3078 4.2591 -3.9014 10 1 4.6979 4.2004 -3.4960 11 1 3.5562 2.2196 -4.3043 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 1 0.7255 -2.4965 -0.8666 16 6 0.5312 -2.5566 1.2816 17 16 1.5958 -3.5236 2.4265 18 8 2.6140 -2.6877 2.9591 19 8 0.7853 -4.3056 3.2930 20 6 2.2953 -4.5840 1.0941 21 6 2.3833 -3.6190 -0.1055 22 1 3.3914 -3.2073 -0.1523 23 6 2.1069 -4.4000 -1.3918 24 9 2.2464 -3.5488 -2.4932 25 9 3.0178 -5.4562 -1.5010 26 9 0.8041 -4.9087 -1.3577 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6083 2.0284 0.5139 31 1 3.1499 1.1385 0.5139 32 1 4.0293 4.4444 -0.8503 33 1 0.3375 -1.5617 1.6825 34 1 -0.4040 -3.0819 1.0880 35 1 1.6243 -5.4141 0.8733 36 1 3.2845 -4.9515 1.3672 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602081638.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:40 Heat of formation + Delta-G solvation = -242.860718 kcal Electronic energy + Delta-G solvation = -28039.733234 eV Core-core repulsion = 23430.144070 eV Total energy + Delta-G solvation = -4609.589164 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.074 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.32711 -47.80470 -47.73027 -40.02515 -37.30372 -36.39248 -36.12141 -35.16886 -32.78344 -31.00780 -27.87155 -27.50645 -26.28783 -24.94760 -23.12567 -21.33625 -19.35244 -19.32162 -18.58987 -18.36947 -18.07061 -16.86986 -16.62646 -16.44162 -16.05541 -15.94939 -15.44125 -15.05800 -14.67149 -14.62662 -14.40921 -14.18606 -13.93272 -13.91473 -13.76362 -13.62875 -13.40853 -12.89807 -12.70275 -12.55580 -12.33497 -12.25947 -12.21361 -12.13272 -11.97116 -11.43619 -11.27239 -11.02949 -10.94664 -10.65486 -10.61092 -10.23269 -9.73595 -9.26512 -8.50205 -7.87459 -6.11303 -4.16803 -0.29337 2.05795 2.45929 2.84014 3.20561 3.26124 3.30578 3.33769 3.38981 3.52438 3.54855 3.79443 3.87536 4.19566 4.26299 4.33389 4.38999 4.51809 4.63054 4.95230 4.98916 5.12433 5.23518 5.29561 5.43233 5.51724 5.69350 6.05309 6.85333 7.30439 7.36101 7.83451 8.12136 8.14444 8.66163 8.88647 9.48541 10.96916 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.014904 B = 0.004735 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.285612 B = 5912.047137 C = 6992.691305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.591 5.591 3 C 0.243 3.757 4 C -0.531 4.531 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.505 3.495 13 O -0.518 6.518 14 C -0.111 4.111 15 H 0.128 0.872 16 C -0.576 4.576 17 S 2.384 3.616 18 O -0.902 6.902 19 O -0.929 6.929 20 C -0.580 4.580 21 C -0.132 4.132 22 H 0.166 0.834 23 C 0.464 3.536 24 F -0.171 7.171 25 F -0.177 7.177 26 F -0.182 7.182 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.037 0.963 31 H 0.049 0.951 32 H 0.264 0.736 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.145 0.855 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.526 -16.910 2.449 19.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.322 5.322 3 C 0.125 3.875 4 C -0.570 4.570 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.289 3.711 13 O -0.395 6.395 14 C -0.134 4.134 15 H 0.146 0.854 16 C -0.705 4.705 17 S 2.565 3.435 18 O -0.899 6.899 19 O -0.926 6.926 20 C -0.708 4.708 21 C -0.152 4.152 22 H 0.184 0.816 23 C 0.409 3.591 24 F -0.152 7.152 25 F -0.158 7.158 26 F -0.164 7.164 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.171 0.829 34 H 0.171 0.829 35 H 0.164 0.836 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.633 -16.672 3.475 18.663 hybrid contribution -0.150 0.226 -2.261 2.278 sum -7.783 -16.446 1.213 18.235 Atomic orbital electron populations 1.21873 0.81281 1.03264 1.00622 1.48061 1.06298 1.07523 1.70276 1.19434 0.92788 0.77453 0.97859 1.21391 1.37004 1.06484 0.92077 0.92341 1.24930 0.95212 0.96342 0.97513 1.69928 1.38113 1.14275 1.30787 0.86485 0.77741 0.78630 0.84500 1.20617 1.21023 1.19853 1.19681 0.87974 0.84655 0.78796 1.90689 1.13125 1.85915 1.49746 1.21373 0.96636 0.94676 1.00736 0.85384 1.30606 1.12734 1.17068 1.10108 1.09514 0.77939 0.78193 0.77896 1.93736 1.55536 1.65062 1.75576 1.93632 1.68303 1.69111 1.61550 1.30562 1.15263 1.11438 1.13507 1.22627 1.07800 0.93839 0.90965 0.81629 1.20206 0.74074 0.78297 0.86502 1.93265 1.95403 1.70171 1.56366 1.93192 1.67138 1.58888 1.96600 1.93168 1.38333 1.88133 1.96733 0.93174 0.90099 0.92052 0.94546 0.93279 0.92583 0.82865 0.82916 0.83639 0.82814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.00 8.97 59.85 0.54 1.54 16 2 N -0.59 -11.41 2.80 -182.95 -0.51 -11.92 16 3 C 0.24 6.05 5.16 -5.19 -0.03 6.02 16 4 C -0.53 -14.48 9.39 -34.44 -0.32 -14.80 16 5 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.51 9.34 6.94 -10.98 -0.08 9.26 16 13 O -0.52 -11.73 14.63 5.56 0.08 -11.65 16 14 C -0.11 -1.37 1.52 -91.46 -0.14 -1.51 16 15 H 0.13 1.34 6.11 -51.93 -0.32 1.03 16 16 C -0.58 -5.22 5.94 37.79 0.22 -5.00 16 17 S 2.38 25.29 6.10 -107.50 -0.66 24.63 16 18 O -0.90 -13.89 18.16 -57.66 -1.05 -14.94 16 19 O -0.93 -11.48 18.17 -57.66 -1.05 -12.52 16 20 C -0.58 -4.86 6.48 37.79 0.25 -4.62 16 21 C -0.13 -1.52 2.27 -90.31 -0.20 -1.72 16 22 H 0.17 2.24 6.14 -51.93 -0.32 1.92 16 23 C 0.46 5.31 2.42 37.16 0.09 5.40 16 24 F -0.17 -2.38 16.78 2.25 0.04 -2.34 16 25 F -0.18 -2.02 16.95 2.25 0.04 -1.98 16 26 F -0.18 -1.82 16.14 2.25 0.04 -1.79 16 27 H 0.05 0.55 6.88 -51.93 -0.36 0.19 16 28 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 29 H 0.06 0.64 6.10 -51.93 -0.32 0.32 16 30 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.05 1.39 7.42 -51.93 -0.39 1.00 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.15 1.41 5.36 -51.93 -0.28 1.13 16 34 H 0.15 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.15 0.85 7.39 -51.93 -0.38 0.47 16 36 H 0.15 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 322.38 15.07 4.86 4.86 Total: -1.00 -36.59 322.38 -5.85 -42.44 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -3.59 Total: -2.20 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 0.23 Total: -3.78 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.22 Total: -37.11 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -2.01 Total: -39.11 kcal Atomic # 9 Polarization: -6.22 SS G_CDS: 0.11 Total: -6.10 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 25.29 SS G_CDS: -0.66 Total: 24.63 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -36.59 -5.85 -42.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602081638.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.418 kcal (2) G-P(sol) polarization free energy of solvation -36.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds