Wall clock time and date at job start Tue Mar 31 2020 05:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 120.00104 * 2 1 4 4 C 1.50697 * 109.47157 * 90.00415 * 3 2 1 5 5 H 1.08002 * 120.00246 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00031 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00259 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00307 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46881 * 270.00234 * 8 6 4 10 10 H 1.48506 * 109.47055 * 29.99381 * 8 6 4 11 11 H 1.48495 * 109.47448 * 149.99893 * 8 6 4 12 12 C 1.34783 * 119.99705 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99618 * 185.48816 * 12 2 1 14 14 C 1.50695 * 119.99979 * 5.48782 * 12 2 1 15 15 H 1.09000 * 108.90264 * 349.33293 * 14 12 2 16 16 C 1.53623 * 108.93241 * 230.64715 * 14 12 2 17 17 S 1.83237 * 105.34558 * 241.63265 * 16 14 12 18 18 O 1.42100 * 109.61415 * 133.32420 * 17 16 14 19 19 O 1.42100 * 109.61245 * 267.27717 * 17 16 14 20 20 C 1.83846 * 95.32397 * 20.30210 * 17 16 14 21 21 C 1.52978 * 108.93055 * 107.88724 * 14 12 2 22 22 H 1.09000 * 109.64949 * 210.64376 * 21 14 12 23 23 C 1.53000 * 109.65354 * 330.96198 * 21 14 12 24 24 F 1.39906 * 109.46914 * 66.51865 * 23 21 14 25 25 F 1.39895 * 109.47430 * 186.52135 * 23 21 14 26 26 F 1.39899 * 109.47309 * 306.52332 * 23 21 14 27 27 H 1.08999 * 109.47344 * 86.18840 * 1 2 3 28 28 H 1.08999 * 109.47047 * 206.19094 * 1 2 3 29 29 H 1.09002 * 109.47216 * 326.18901 * 1 2 3 30 30 H 1.09003 * 109.46996 * 329.99764 * 3 2 1 31 31 H 1.09003 * 109.46758 * 210.00253 * 3 2 1 32 32 H 0.97002 * 120.00398 * 180.02562 * 7 6 4 33 33 H 1.08999 * 110.26862 * 0.59554 * 16 14 12 34 34 H 1.08993 * 110.26870 * 122.57215 * 16 14 12 35 35 H 1.08995 * 111.07718 * 82.05147 * 20 17 16 36 36 H 1.08994 * 111.07733 * 206.05323 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 1.4208 5 1 2.0975 1.0961 2.2417 6 6 3.1261 2.8778 1.6727 7 7 3.5534 3.6180 0.6731 8 14 3.4370 3.4175 3.4339 9 1 2.3065 4.2601 3.9002 10 1 3.5542 2.2204 4.3050 11 1 4.6970 4.2007 3.4966 12 6 2.1388 -1.1673 -0.0005 13 8 3.3474 -1.1697 0.0999 14 6 1.3905 -2.4693 -0.1259 15 1 0.3237 -2.2756 -0.0135 16 6 1.8460 -3.4160 0.9949 17 16 2.5841 -4.8592 0.1406 18 8 3.8275 -5.1869 0.7454 19 8 1.5936 -5.8609 -0.0459 20 6 2.8824 -3.9829 -1.4478 21 6 1.6421 -3.0544 -1.5168 22 1 0.7719 -3.6280 -1.8360 23 6 1.9019 -1.9218 -2.5122 24 9 3.1054 -1.2851 -2.1904 25 9 1.9838 -2.4477 -3.8060 26 9 0.8540 -0.9970 -2.4502 27 1 -0.3634 0.0683 -1.0254 28 1 -0.3633 -0.9221 0.4536 29 1 -0.3634 0.8539 0.5719 30 1 1.6084 2.0283 -0.5139 31 1 3.1499 1.1383 -0.5139 32 1 4.0302 4.4439 0.8504 33 1 2.5911 -2.9271 1.6226 34 1 0.9921 -3.7275 1.5964 35 1 3.8044 -3.4031 -1.4085 36 1 2.8968 -4.6817 -2.2842 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602081640.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:44 Heat of formation + Delta-G solvation = -232.958703 kcal Electronic energy + Delta-G solvation = -28702.425155 eV Core-core repulsion = 24093.265374 eV Total energy + Delta-G solvation = -4609.159781 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.074 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.11384 -47.64212 -47.46106 -39.84859 -37.35026 -36.39882 -36.11396 -34.96028 -32.67432 -30.94644 -28.22568 -27.39256 -25.96327 -24.82878 -23.10871 -21.46713 -19.36131 -19.13134 -18.53364 -18.25012 -17.54793 -17.27131 -16.57096 -16.30875 -16.18399 -15.83407 -15.36823 -14.78075 -14.64026 -14.47854 -14.27380 -14.14193 -13.99569 -13.69478 -13.44646 -13.32738 -13.22415 -12.75648 -12.65345 -12.48171 -12.30997 -12.26322 -12.09547 -12.02581 -11.87801 -11.62803 -11.28195 -10.98350 -10.94024 -10.69274 -10.54805 -10.22351 -9.69625 -9.12385 -8.48919 -7.78614 -6.09774 -4.14951 -0.25310 2.08248 2.57613 2.93393 3.09716 3.26360 3.33719 3.36485 3.45277 3.53978 3.68559 3.79178 3.97045 4.24280 4.34886 4.38547 4.46744 4.55254 4.66308 4.83800 5.02728 5.15594 5.25207 5.39208 5.51543 5.54890 5.87021 6.13102 6.90521 7.34123 7.39192 7.84975 8.15060 8.19874 8.72574 8.91081 9.50098 10.98363 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.015673 B = 0.005002 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.096563 B = 5596.057849 C = 6534.060875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.587 5.587 3 C 0.248 3.752 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.285 1.285 12 C 0.494 3.506 13 O -0.517 6.517 14 C -0.116 4.116 15 H 0.128 0.872 16 C -0.566 4.566 17 S 2.399 3.601 18 O -0.922 6.922 19 O -0.930 6.930 20 C -0.586 4.586 21 C -0.123 4.123 22 H 0.143 0.857 23 C 0.459 3.541 24 F -0.151 7.151 25 F -0.182 7.182 26 F -0.172 7.172 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.046 0.954 32 H 0.264 0.736 33 H 0.157 0.843 34 H 0.147 0.853 35 H 0.161 0.839 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.383 -14.761 -5.606 17.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.318 5.318 3 C 0.129 3.871 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.211 1.211 12 C 0.278 3.722 13 O -0.394 6.394 14 C -0.138 4.138 15 H 0.146 0.854 16 C -0.695 4.695 17 S 2.581 3.419 18 O -0.919 6.919 19 O -0.927 6.927 20 C -0.714 4.714 21 C -0.144 4.144 22 H 0.161 0.839 23 C 0.404 3.596 24 F -0.132 7.132 25 F -0.164 7.164 26 F -0.153 7.153 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.175 0.825 34 H 0.165 0.835 35 H 0.179 0.821 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.444 -15.465 -5.317 17.968 hybrid contribution -0.120 1.534 0.519 1.624 sum -7.564 -13.931 -4.798 16.562 Atomic orbital electron populations 1.21877 0.81373 1.02392 1.01489 1.48115 1.06254 1.07489 1.69927 1.19340 0.92494 0.77606 0.97654 1.21381 1.36786 1.06336 0.92124 0.92423 1.24929 0.95295 0.96377 0.97442 1.69927 1.38214 1.14309 1.30762 0.86495 0.77715 0.78604 0.84576 1.20655 1.19905 1.21052 1.19833 0.88249 0.84566 0.79554 1.90731 1.13273 1.86319 1.49056 1.21546 1.05331 0.96374 0.90592 0.85382 1.30302 1.14318 1.16368 1.08517 1.08928 0.76242 0.77688 0.79088 1.93647 1.41914 1.82650 1.73713 1.93638 1.60276 1.53777 1.84978 1.30826 1.05357 1.11819 1.23367 1.22832 1.01071 0.95527 0.94970 0.83904 1.20007 0.75736 0.83347 0.80546 1.93379 1.45114 1.82959 1.91748 1.93178 1.96168 1.86414 1.40608 1.93216 1.57622 1.68312 1.96136 0.92621 0.92216 0.90424 0.94818 0.93630 0.92644 0.82538 0.83515 0.82112 0.83154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.03 9.39 59.85 0.56 1.59 16 2 N -0.59 -11.34 2.27 -182.96 -0.41 -11.76 16 3 C 0.25 6.19 5.14 -5.20 -0.03 6.16 16 4 C -0.53 -14.42 9.39 -34.44 -0.32 -14.75 16 5 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.49 8.90 3.58 -10.98 -0.04 8.86 16 13 O -0.52 -11.35 14.25 5.56 0.08 -11.27 16 14 C -0.12 -1.36 2.32 -91.46 -0.21 -1.57 16 15 H 0.13 1.12 5.31 -51.93 -0.28 0.85 16 16 C -0.57 -5.74 6.80 37.48 0.25 -5.48 16 17 S 2.40 24.72 6.05 -107.50 -0.65 24.07 16 18 O -0.92 -13.17 18.16 -57.67 -1.05 -14.22 16 19 O -0.93 -10.86 18.16 -57.67 -1.05 -11.90 16 20 C -0.59 -5.59 6.65 38.26 0.25 -5.34 16 21 C -0.12 -1.26 2.48 -89.52 -0.22 -1.48 16 22 H 0.14 0.87 8.14 -51.93 -0.42 0.45 16 23 C 0.46 6.17 2.38 37.16 0.09 6.26 16 24 F -0.15 -2.65 12.67 2.25 0.03 -2.63 16 25 F -0.18 -2.26 17.21 2.25 0.04 -2.23 16 26 F -0.17 -2.38 13.23 2.25 0.03 -2.35 16 27 H 0.06 0.71 6.49 -51.93 -0.34 0.37 16 28 H 0.06 0.63 5.79 -51.93 -0.30 0.33 16 29 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 30 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 31 H 0.05 1.29 7.50 -51.93 -0.39 0.90 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.16 1.90 7.28 -51.93 -0.38 1.52 16 34 H 0.15 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.16 1.78 7.33 -51.93 -0.38 1.40 16 36 H 0.15 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 316.15 15.07 4.76 4.76 Total: -1.00 -36.99 316.15 -5.98 -42.96 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -3.71 Total: -2.43 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 0.24 Total: -4.11 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.32 Total: -37.10 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -2.02 Total: -37.39 kcal Atomic # 9 Polarization: -7.30 SS G_CDS: 0.10 Total: -7.21 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 24.72 SS G_CDS: -0.65 Total: 24.07 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -36.99 -5.98 -42.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602081640.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.995 kcal (2) G-P(sol) polarization free energy of solvation -36.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds