Wall clock time and date at job start Tue Mar 31 2020 04:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42897 * 109.47276 * 2 1 4 4 C 1.42901 * 114.00148 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47253 * 179.97438 * 4 3 2 6 6 O 1.42904 * 109.47279 * 64.99747 * 5 4 3 7 7 C 1.42895 * 114.00490 * 180.02562 * 6 5 4 8 8 C 1.52992 * 109.47606 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47482 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.47074 * 120.88261 * 359.72571 * 12 10 9 14 14 C 1.53695 * 108.27576 * 128.74910 * 13 12 10 15 15 N 1.46904 * 109.25420 * 54.08473 * 14 13 12 16 16 C 1.46897 * 110.99901 * 172.60509 * 15 14 13 17 17 C 1.50703 * 109.47428 * 294.29982 * 16 15 14 18 18 H 1.08006 * 119.99872 * 0.02562 * 17 16 15 19 19 C 1.37869 * 120.00179 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00343 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00028 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46883 * 60.00256 * 21 19 17 23 23 H 1.48500 * 109.47172 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47020 * 300.00160 * 21 19 17 25 25 C 1.46897 * 111.26792 * 296.75440 * 15 14 13 26 26 C 1.47075 * 120.87669 * 180.02562 * 12 10 9 27 27 H 1.09000 * 109.47147 * 59.99996 * 1 2 3 28 28 H 1.08997 * 109.46785 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46782 * 300.00069 * 1 2 3 30 30 H 1.09001 * 109.47199 * 240.00171 * 2 1 3 31 31 H 1.09000 * 109.47147 * 120.00003 * 2 1 3 32 32 H 1.09000 * 109.46954 * 60.00033 * 4 3 2 33 33 H 1.08992 * 109.46946 * 300.00116 * 4 3 2 34 34 H 1.09006 * 109.47074 * 305.00407 * 5 4 3 35 35 H 1.08995 * 109.47115 * 185.00275 * 5 4 3 36 36 H 1.09002 * 109.47063 * 60.00241 * 7 6 5 37 37 H 1.09001 * 109.46798 * 300.00508 * 7 6 5 38 38 H 1.09002 * 109.47103 * 59.99788 * 8 7 6 39 39 H 1.08998 * 109.46862 * 300.00600 * 8 7 6 40 40 H 1.09002 * 109.47153 * 59.99783 * 9 8 7 41 41 H 1.09001 * 109.46832 * 299.99974 * 9 8 7 42 42 H 1.08994 * 109.63016 * 248.52290 * 13 12 10 43 43 H 1.09001 * 109.62513 * 9.10199 * 13 12 10 44 44 H 1.08997 * 109.65385 * 294.08176 * 14 13 12 45 45 H 1.08999 * 109.42153 * 173.94686 * 14 13 12 46 46 H 1.08994 * 109.47420 * 54.30050 * 16 15 14 47 47 H 1.08997 * 109.47407 * 174.29955 * 16 15 14 48 48 H 0.96998 * 120.00461 * 179.97438 * 20 19 17 49 49 H 1.09001 * 109.49120 * 303.14081 * 25 15 14 50 50 H 1.09003 * 109.48945 * 183.06528 * 25 15 14 51 51 H 1.09003 * 109.63301 * 350.89825 * 26 12 10 52 52 H 1.09003 * 109.62726 * 111.48107 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4601 0.0006 5 6 3.8255 2.9383 -0.0001 6 8 3.3976 3.5462 1.2204 7 6 3.7183 4.9350 1.3218 8 6 3.2164 5.4779 2.6612 9 6 3.5592 6.9651 2.7694 10 6 3.0642 7.4999 4.0885 11 8 2.4939 6.7640 4.8657 12 7 3.2563 8.7959 4.4050 13 6 3.9517 9.7038 3.4801 14 6 3.0788 10.9535 3.2842 15 7 2.7578 11.5308 4.5963 16 6 2.0737 12.8225 4.4501 17 6 3.0157 13.8227 3.8309 18 1 4.0219 13.5282 3.5716 19 6 2.5927 15.1134 3.5946 20 7 1.3673 15.4721 3.9098 21 14 3.7601 16.3531 2.8264 22 1 4.1903 15.8663 1.4911 23 1 3.0681 17.6585 2.6775 24 1 4.9498 16.5196 3.6995 25 6 1.9598 10.6011 5.4067 26 6 2.7818 9.3381 5.6871 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8341 0.9764 -0.8892 33 1 3.8333 0.9767 0.8907 34 1 3.3500 3.4409 -0.8425 35 1 4.9083 3.0253 -0.0893 36 1 3.2403 5.4787 0.5069 37 1 4.7989 5.0638 1.2598 38 1 3.6947 4.9342 3.4758 39 1 2.1359 5.3489 2.7235 40 1 3.0805 7.5085 1.9548 41 1 4.6397 7.0943 2.7069 42 1 4.9153 9.9888 3.9022 43 1 4.1013 9.2061 2.5219 44 1 2.1566 10.6799 2.7718 45 1 3.6231 11.6859 2.6880 46 1 1.2006 12.7007 3.8091 47 1 1.7577 13.1794 5.4303 48 1 1.0698 16.3802 3.7439 49 1 1.0530 10.3324 4.8647 50 1 1.6925 11.0779 6.3497 51 1 2.1575 8.5988 6.1889 52 1 3.6353 9.5889 6.3170 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602199517.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:58 Heat of formation + Delta-G solvation = -131.887952 kcal Electronic energy + Delta-G solvation = -27676.737193 eV Core-core repulsion = 23676.281984 eV Total energy + Delta-G solvation = -4000.455209 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.02458 -38.85714 -37.81431 -37.44742 -34.39616 -33.94703 -32.44787 -32.05006 -30.83395 -29.57604 -28.38147 -26.88472 -25.25111 -23.31715 -23.15477 -22.92552 -22.38945 -21.59961 -20.36612 -18.60065 -17.43952 -17.29204 -16.92295 -16.40700 -16.33184 -16.05192 -15.52234 -15.39942 -15.26290 -14.77862 -14.44022 -14.24190 -13.91366 -13.80122 -13.68034 -13.50689 -13.20862 -13.01247 -12.70066 -12.46173 -12.20981 -12.06567 -11.91296 -11.80766 -11.69322 -11.40049 -11.30329 -11.19059 -11.07785 -11.01044 -10.96124 -10.76108 -10.62806 -10.55668 -9.98752 -9.91102 -9.86361 -9.62300 -9.31176 -8.51749 -8.42820 -7.34649 -6.07930 -4.10373 2.74065 3.01751 3.27550 3.29171 3.34201 3.36138 3.44169 4.36771 4.49881 4.59722 4.65855 4.74264 4.75909 4.80523 4.82316 4.88174 4.96897 5.02636 5.07090 5.11386 5.19699 5.23244 5.27204 5.31225 5.31797 5.38214 5.39736 5.48601 5.53877 5.54641 5.64273 5.76603 5.77078 5.88280 5.97032 6.03418 6.13834 6.27976 6.43597 6.44847 6.69082 6.80327 6.96299 7.20285 7.26165 7.56609 7.72025 7.99665 8.10218 8.29203 8.45327 8.96407 9.54194 11.02763 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.019228 B = 0.001705 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.894708 B =16420.931366 C =16860.403204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.381 6.381 4 C 0.064 3.936 5 C 0.064 3.936 6 O -0.379 6.379 7 C 0.063 3.937 8 C -0.102 4.102 9 C -0.137 4.137 10 C 0.514 3.486 11 O -0.550 6.550 12 N -0.609 5.609 13 C 0.108 3.892 14 C 0.050 3.950 15 N -0.536 5.536 16 C 0.193 3.807 17 C -0.511 4.511 18 H 0.063 0.937 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.276 1.276 25 C 0.041 3.959 26 C 0.118 3.882 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.025 0.975 45 H 0.097 0.903 46 H -0.009 1.009 47 H 0.032 0.968 48 H 0.262 0.738 49 H 0.026 0.974 50 H 0.081 0.919 51 H 0.087 0.913 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.549 -26.911 -8.772 28.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.012 4.012 5 C -0.013 4.013 6 O -0.298 6.298 7 C -0.014 4.014 8 C -0.139 4.139 9 C -0.177 4.177 10 C 0.302 3.698 11 O -0.428 6.428 12 N -0.343 5.343 13 C -0.015 4.015 14 C -0.080 4.080 15 N -0.261 5.261 16 C 0.069 3.931 17 C -0.550 4.550 18 H 0.081 0.919 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.727 3.273 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.201 1.201 25 C -0.088 4.088 26 C -0.005 4.005 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.043 0.957 45 H 0.115 0.885 46 H 0.009 0.991 47 H 0.050 0.950 48 H 0.072 0.928 49 H 0.044 0.956 50 H 0.099 0.901 51 H 0.106 0.894 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.329 -26.983 -7.967 28.635 hybrid contribution 0.140 0.743 -1.124 1.355 sum 5.469 -26.239 -9.091 28.303 Atomic orbital electron populations 1.21742 0.93636 1.02181 1.03380 1.22463 0.95830 0.83839 0.99857 1.87986 1.20449 1.26224 1.95362 1.22510 0.82309 0.95664 1.00759 1.22499 0.98218 0.92587 0.88010 1.87958 1.81069 1.23101 1.37692 1.22520 0.98808 0.81925 0.98154 1.21195 1.03339 0.93195 0.96217 1.21563 1.02975 0.96893 0.96259 1.20527 0.79237 0.81543 0.88486 1.90677 1.43135 1.56966 1.52042 1.48259 1.57332 1.08924 1.19760 1.22119 0.96345 0.90397 0.92593 1.22416 0.98079 0.94955 0.92521 1.62075 1.45749 1.04291 1.13959 1.19726 0.92820 0.83639 0.96957 1.21094 0.98814 0.94726 1.40333 0.91856 1.24994 0.95241 0.98412 0.95896 1.69944 1.16689 1.19021 1.47977 0.86548 0.80844 0.80266 0.79654 1.20289 1.21365 1.20134 1.22413 0.94347 0.92886 0.99193 1.21753 0.98928 0.95077 0.84727 0.91871 0.91154 0.91603 0.93624 0.93384 0.91948 0.92415 0.92421 0.91817 0.93144 0.93325 0.90417 0.90279 0.88678 0.88777 0.90542 0.90154 0.95669 0.88482 0.99101 0.95011 0.92794 0.95553 0.90083 0.89437 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.61 16 2 C 0.06 0.41 6.66 37.16 0.25 0.66 16 3 O -0.38 -3.85 10.31 -40.08 -0.41 -4.26 16 4 C 0.06 0.49 6.32 37.16 0.23 0.72 16 5 C 0.06 0.51 6.32 37.16 0.23 0.74 16 6 O -0.38 -4.22 10.31 -40.08 -0.41 -4.63 16 7 C 0.06 0.58 5.94 37.15 0.22 0.80 16 8 C -0.10 -1.12 4.87 -26.74 -0.13 -1.25 16 9 C -0.14 -1.43 4.06 -27.88 -0.11 -1.54 16 10 C 0.51 7.54 7.71 -10.98 -0.08 7.45 16 11 O -0.55 -9.92 15.43 5.56 0.09 -9.83 16 12 N -0.61 -9.07 3.00 -172.16 -0.52 -9.59 16 13 C 0.11 1.47 6.53 -3.37 -0.02 1.45 16 14 C 0.05 0.88 5.47 -3.46 -0.02 0.86 16 15 N -0.54 -11.00 4.62 -235.44 -1.09 -12.09 16 16 C 0.19 4.89 4.72 -4.98 -0.02 4.86 16 17 C -0.51 -13.78 8.41 -34.44 -0.29 -14.07 16 18 H 0.06 1.66 7.13 -52.48 -0.37 1.28 16 19 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -26.14 13.29 55.43 0.74 -25.40 16 21 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 C 0.04 0.74 5.62 -3.68 -0.02 0.71 16 26 C 0.12 1.85 6.60 -3.58 -0.02 1.83 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 39 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 40 H 0.09 0.87 7.67 -51.93 -0.40 0.47 16 41 H 0.09 0.77 7.99 -51.93 -0.41 0.36 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.08 0.83 6.02 -51.93 -0.31 0.52 16 44 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.10 1.82 6.67 -51.93 -0.35 1.47 16 46 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 47 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 48 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 49 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.08 1.42 7.99 -51.93 -0.41 1.00 16 51 H 0.09 1.38 7.06 -51.93 -0.37 1.02 16 52 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 416.05 15.07 6.27 6.27 Total: -1.00 -33.23 416.05 -9.64 -42.87 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -9.78 Total: -3.35 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 0.50 Total: 4.06 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: -0.87 Total: -47.08 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.74 Total: -18.73 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.23 -9.64 -42.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602199517.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.016 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds