Wall clock time and date at job start Tue Mar 31 2020 04:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42897 * 109.47276 * 2 1 4 4 C 1.42901 * 114.00148 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47253 * 179.97438 * 4 3 2 6 6 O 1.42904 * 109.47279 * 64.99747 * 5 4 3 7 7 C 1.42895 * 114.00490 * 180.02562 * 6 5 4 8 8 C 1.52992 * 109.47606 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47482 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.47074 * 120.88261 * 359.72571 * 12 10 9 14 14 C 1.53695 * 108.27576 * 128.74910 * 13 12 10 15 15 N 1.46904 * 109.25420 * 54.08473 * 14 13 12 16 16 C 1.46897 * 110.99901 * 172.60509 * 15 14 13 17 17 C 1.50703 * 109.47428 * 294.29982 * 16 15 14 18 18 H 1.08006 * 119.99872 * 0.02562 * 17 16 15 19 19 C 1.37869 * 120.00179 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00343 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00028 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46883 * 60.00256 * 21 19 17 23 23 H 1.48500 * 109.47172 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47020 * 300.00160 * 21 19 17 25 25 C 1.46897 * 111.26792 * 296.75440 * 15 14 13 26 26 C 1.47075 * 120.87669 * 180.02562 * 12 10 9 27 27 H 1.09000 * 109.47147 * 59.99996 * 1 2 3 28 28 H 1.08997 * 109.46785 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46782 * 300.00069 * 1 2 3 30 30 H 1.09001 * 109.47199 * 240.00171 * 2 1 3 31 31 H 1.09000 * 109.47147 * 120.00003 * 2 1 3 32 32 H 1.09000 * 109.46954 * 60.00033 * 4 3 2 33 33 H 1.08992 * 109.46946 * 300.00116 * 4 3 2 34 34 H 1.09006 * 109.47074 * 305.00407 * 5 4 3 35 35 H 1.08995 * 109.47115 * 185.00275 * 5 4 3 36 36 H 1.09002 * 109.47063 * 60.00241 * 7 6 5 37 37 H 1.09001 * 109.46798 * 300.00508 * 7 6 5 38 38 H 1.09002 * 109.47103 * 59.99788 * 8 7 6 39 39 H 1.08998 * 109.46862 * 300.00600 * 8 7 6 40 40 H 1.09002 * 109.47153 * 59.99783 * 9 8 7 41 41 H 1.09001 * 109.46832 * 299.99974 * 9 8 7 42 42 H 1.08994 * 109.63016 * 248.52290 * 13 12 10 43 43 H 1.09001 * 109.62513 * 9.10199 * 13 12 10 44 44 H 1.08997 * 109.65385 * 294.08176 * 14 13 12 45 45 H 1.08999 * 109.42153 * 173.94686 * 14 13 12 46 46 H 1.08994 * 109.47420 * 54.30050 * 16 15 14 47 47 H 1.08997 * 109.47407 * 174.29955 * 16 15 14 48 48 H 0.96998 * 120.00461 * 179.97438 * 20 19 17 49 49 H 1.09001 * 109.49120 * 303.14081 * 25 15 14 50 50 H 1.09003 * 109.48945 * 183.06528 * 25 15 14 51 51 H 1.09003 * 109.63301 * 350.89825 * 26 12 10 52 52 H 1.09003 * 109.62726 * 111.48107 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4601 0.0006 5 6 3.8255 2.9383 -0.0001 6 8 3.3976 3.5462 1.2204 7 6 3.7183 4.9350 1.3218 8 6 3.2164 5.4779 2.6612 9 6 3.5592 6.9651 2.7694 10 6 3.0642 7.4999 4.0885 11 8 2.4939 6.7640 4.8657 12 7 3.2563 8.7959 4.4050 13 6 3.9517 9.7038 3.4801 14 6 3.0788 10.9535 3.2842 15 7 2.7578 11.5308 4.5963 16 6 2.0737 12.8225 4.4501 17 6 3.0157 13.8227 3.8309 18 1 4.0219 13.5282 3.5716 19 6 2.5927 15.1134 3.5946 20 7 1.3673 15.4721 3.9098 21 14 3.7601 16.3531 2.8264 22 1 4.1903 15.8663 1.4911 23 1 3.0681 17.6585 2.6775 24 1 4.9498 16.5196 3.6995 25 6 1.9598 10.6011 5.4067 26 6 2.7818 9.3381 5.6871 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8341 0.9764 -0.8892 33 1 3.8333 0.9767 0.8907 34 1 3.3500 3.4409 -0.8425 35 1 4.9083 3.0253 -0.0893 36 1 3.2403 5.4787 0.5069 37 1 4.7989 5.0638 1.2598 38 1 3.6947 4.9342 3.4758 39 1 2.1359 5.3489 2.7235 40 1 3.0805 7.5085 1.9548 41 1 4.6397 7.0943 2.7069 42 1 4.9153 9.9888 3.9022 43 1 4.1013 9.2061 2.5219 44 1 2.1566 10.6799 2.7718 45 1 3.6231 11.6859 2.6880 46 1 1.2006 12.7007 3.8091 47 1 1.7577 13.1794 5.4303 48 1 1.0698 16.3802 3.7439 49 1 1.0530 10.3324 4.8647 50 1 1.6925 11.0779 6.3497 51 1 2.1575 8.5988 6.1889 52 1 3.6353 9.5889 6.3170 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602199517.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:58 Heat of formation + Delta-G solvation = -154.910474 kcal Electronic energy + Delta-G solvation = -27677.735524 eV Core-core repulsion = 23676.281984 eV Total energy + Delta-G solvation = -4001.453540 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.23860 -39.51776 -39.02778 -38.33302 -35.96091 -34.84245 -34.34346 -32.67005 -32.11547 -30.31782 -29.92125 -28.06357 -26.73856 -24.65701 -23.92544 -23.68579 -23.50192 -22.82688 -21.68270 -19.80497 -18.48047 -18.31428 -18.00574 -17.77623 -17.15580 -16.90240 -16.67037 -16.43744 -16.32829 -16.00297 -15.95165 -15.51844 -15.29821 -14.99483 -14.77532 -14.34775 -14.11579 -14.07203 -13.98517 -13.57834 -13.39258 -13.11088 -12.90289 -12.87111 -12.75847 -12.56652 -12.44966 -12.38036 -12.30382 -12.24780 -12.12004 -12.01553 -11.87976 -11.77461 -11.73766 -11.29443 -10.83119 -10.59999 -10.57111 -10.51150 -9.75613 -9.05934 -8.18921 -6.29786 1.44755 1.47912 1.55593 1.60819 1.94493 2.42240 2.71617 2.76882 3.13521 3.23628 3.52502 3.94935 4.00254 4.01687 4.04650 4.13074 4.17816 4.22571 4.24667 4.27411 4.33063 4.39285 4.44767 4.48012 4.51336 4.52154 4.54389 4.57350 4.60258 4.72446 4.74398 4.76502 4.86886 4.89931 4.95501 5.01948 5.03572 5.14071 5.20404 5.22882 5.25067 5.27211 5.47574 5.64553 6.02814 6.23103 6.24469 6.36804 6.45610 6.56160 6.86044 7.14013 7.40434 8.92189 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.019228 B = 0.001705 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.894708 B =16420.931366 C =16860.403204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.414 6.414 4 C 0.058 3.942 5 C 0.058 3.942 6 O -0.412 6.412 7 C 0.065 3.935 8 C -0.097 4.097 9 C -0.128 4.128 10 C 0.509 3.491 11 O -0.590 6.590 12 N -0.613 5.613 13 C 0.119 3.881 14 C 0.046 3.954 15 N -0.538 5.538 16 C 0.207 3.793 17 C -0.522 4.522 18 H 0.072 0.928 19 C 0.000 4.000 20 N -0.937 5.937 21 Si 0.972 3.028 22 H -0.263 1.263 23 H -0.289 1.289 24 H -0.268 1.268 25 C 0.044 3.956 26 C 0.126 3.874 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.116 0.884 41 H 0.130 0.870 42 H 0.088 0.912 43 H 0.124 0.876 44 H 0.014 0.986 45 H 0.089 0.911 46 H -0.042 1.042 47 H 0.003 0.997 48 H 0.263 0.737 49 H 0.012 0.988 50 H 0.078 0.922 51 H 0.085 0.915 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.446 -27.825 -10.802 31.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.334 6.334 4 C -0.018 4.018 5 C -0.018 4.018 6 O -0.332 6.332 7 C -0.011 4.011 8 C -0.135 4.135 9 C -0.167 4.167 10 C 0.300 3.700 11 O -0.471 6.471 12 N -0.346 5.346 13 C -0.003 4.003 14 C -0.082 4.082 15 N -0.263 5.263 16 C 0.081 3.919 17 C -0.560 4.560 18 H 0.090 0.910 19 C -0.198 4.198 20 N -0.578 5.578 21 Si 0.797 3.203 22 H -0.188 1.188 23 H -0.214 1.214 24 H -0.192 1.192 25 C -0.085 4.085 26 C 0.003 3.997 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.134 0.866 41 H 0.148 0.852 42 H 0.107 0.893 43 H 0.142 0.858 44 H 0.033 0.967 45 H 0.107 0.893 46 H -0.024 1.024 47 H 0.021 0.979 48 H 0.072 0.928 49 H 0.031 0.969 50 H 0.097 0.903 51 H 0.103 0.897 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.252 -27.924 -10.013 30.791 hybrid contribution -0.827 0.960 -0.460 1.348 sum 7.425 -26.964 -10.473 29.864 Atomic orbital electron populations 1.21775 0.93572 1.03255 1.02347 1.22630 0.96014 0.83030 1.00888 1.87945 1.21989 1.27867 1.95595 1.22707 0.81320 0.95872 1.01895 1.22726 0.99774 0.92495 0.86809 1.87918 1.81852 1.24074 1.39357 1.22536 1.00327 0.81337 0.96935 1.21105 1.01386 0.93868 0.97147 1.21604 1.05125 0.96067 0.93906 1.21320 0.78233 0.80938 0.89533 1.90665 1.44868 1.57890 1.53669 1.48370 1.57352 1.09418 1.19482 1.22173 0.95188 0.88376 0.94540 1.22506 0.98338 0.96662 0.90727 1.62018 1.45035 1.03319 1.15908 1.19382 0.91912 0.86198 0.94405 1.21430 0.99241 0.95244 1.40074 0.90993 1.25960 0.96865 1.00652 0.96332 1.70096 1.18815 1.19529 1.49314 0.85390 0.78493 0.77218 0.79228 1.18767 1.21445 1.19242 1.22427 0.94124 0.93513 0.98467 1.21573 0.98861 0.93524 0.85746 0.92283 0.89057 0.93195 0.91780 0.93052 0.89305 0.92651 0.92358 0.89183 0.92105 0.90714 0.92052 0.93190 0.86573 0.85218 0.89345 0.85784 0.96736 0.89324 1.02413 0.97932 0.92794 0.96942 0.90318 0.89689 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 10.28 71.98 0.74 -1.20 16 2 C 0.05 0.68 6.66 71.98 0.48 1.16 16 3 O -0.41 -8.16 10.31 -144.35 -1.49 -9.64 16 4 C 0.06 0.80 6.32 71.98 0.45 1.25 16 5 C 0.06 0.81 6.32 71.98 0.45 1.27 16 6 O -0.41 -8.67 10.31 -144.35 -1.49 -10.16 16 7 C 0.06 1.04 5.94 71.98 0.43 1.46 16 8 C -0.10 -2.01 4.87 30.59 0.15 -1.87 16 9 C -0.13 -2.24 4.06 29.85 0.12 -2.12 16 10 C 0.51 14.07 7.71 87.66 0.68 14.74 16 11 O -0.59 -21.21 15.43 -3.03 -0.05 -21.26 16 12 N -0.61 -17.08 3.00 -816.99 -2.45 -19.54 16 13 C 0.12 2.86 6.53 86.50 0.57 3.43 16 14 C 0.05 1.60 5.47 86.54 0.47 2.07 16 15 N -0.54 -22.28 4.62 -898.81 -4.15 -26.43 16 16 C 0.21 10.85 4.72 85.56 0.40 11.26 16 17 C -0.52 -28.33 8.41 25.60 0.22 -28.11 16 18 H 0.07 3.70 7.13 -2.91 -0.02 3.68 16 19 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 20 N -0.94 -55.80 13.29 21.44 0.28 -55.51 16 21 Si 0.97 42.65 29.54 68.60 2.03 44.68 16 22 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 23 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 25 C 0.04 1.61 5.62 86.40 0.49 2.10 16 26 C 0.13 3.89 6.60 86.36 0.57 4.46 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.09 0.74 8.14 -2.39 -0.02 0.73 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 39 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 40 H 0.12 1.63 7.67 -2.39 -0.02 1.61 16 41 H 0.13 1.44 7.99 -2.39 -0.02 1.42 16 42 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.12 1.93 6.02 -2.39 -0.01 1.92 16 44 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.09 3.21 6.67 -2.39 -0.02 3.19 16 46 H -0.04 -2.42 8.12 -2.39 -0.02 -2.44 16 47 H 0.00 0.15 7.97 -2.39 -0.02 0.13 16 48 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 49 H 0.01 0.48 8.14 -2.39 -0.02 0.47 16 50 H 0.08 2.87 7.99 -2.39 -0.02 2.85 16 51 H 0.08 2.70 7.06 -2.39 -0.02 2.68 16 52 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -75.27 416.05 0.22 -75.05 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.86 Total: 12.44 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 6.68 Total: 10.37 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -6.32 Total: -101.49 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -3.02 Total: -41.06 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -75.27 0.22 -75.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602199517.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.856 kcal (2) G-P(sol) polarization free energy of solvation -75.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds