Wall clock time and date at job start Tue Mar 31 2020 04:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42898 * 114.00210 * 2 1 4 4 C 1.53001 * 110.75141 * 67.18150 * 3 2 1 5 5 N 1.46897 * 109.47268 * 61.64005 * 4 3 2 6 6 C 1.46905 * 110.99481 * 304.46634 * 5 4 3 7 7 C 1.50697 * 109.47184 * 298.11512 * 6 5 4 8 8 H 1.07998 * 119.99948 * 5.04467 * 7 6 5 9 9 C 1.37883 * 119.99912 * 185.04766 * 7 6 5 10 10 N 1.31514 * 119.99663 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99752 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46753 * 90.00188 * 11 9 7 13 13 H 1.48504 * 109.46832 * 209.99879 * 11 9 7 14 14 H 1.48494 * 109.47113 * 329.99992 * 11 9 7 15 15 C 1.46892 * 111.00298 * 68.41865 * 5 4 3 16 16 C 1.53005 * 109.47247 * 60.73620 * 15 5 4 17 17 N 1.46892 * 109.47247 * 179.97438 * 16 15 5 18 18 C 1.47008 * 111.00249 * 293.63253 * 17 16 15 19 19 C 1.53102 * 109.26058 * 177.60885 * 18 17 16 20 20 O 1.43010 * 109.25625 * 56.85215 * 19 18 17 21 21 C 1.43013 * 113.73861 * 301.32895 * 20 19 18 22 22 C 1.47018 * 110.99914 * 170.00127 * 17 16 15 23 23 C 1.55305 * 110.84567 * 303.71253 * 3 2 1 24 24 C 1.55205 * 100.82579 * 275.59211 * 23 3 2 25 25 O 1.43644 * 105.26027 * 323.82020 * 24 23 3 26 26 C 1.43228 * 109.97486 * 24.28086 * 25 24 23 27 27 H 1.08998 * 109.47915 * 307.34621 * 1 2 3 28 28 H 1.09000 * 109.47221 * 67.34383 * 1 2 3 29 29 H 1.09007 * 109.47414 * 187.34092 * 1 2 3 30 30 H 1.08999 * 109.47436 * 301.63006 * 4 3 2 31 31 H 1.09004 * 109.46920 * 181.64001 * 4 3 2 32 32 H 1.08996 * 109.47049 * 58.11565 * 6 5 4 33 33 H 1.09006 * 109.46898 * 178.11744 * 6 5 4 34 34 H 0.96998 * 119.99397 * 179.97438 * 10 9 7 35 35 H 1.08996 * 109.47501 * 300.73635 * 15 5 4 36 36 H 1.09002 * 109.47258 * 180.73446 * 15 5 4 37 37 H 1.09002 * 109.46849 * 300.00076 * 16 15 5 38 38 H 1.08996 * 109.46858 * 59.99621 * 16 15 5 39 39 H 1.08998 * 109.50927 * 297.54330 * 18 17 16 40 40 H 1.09002 * 109.50838 * 57.67194 * 18 17 16 41 41 H 1.08996 * 109.50523 * 296.91168 * 19 18 17 42 42 H 1.09003 * 109.54160 * 176.80636 * 19 18 17 43 43 H 1.09005 * 109.50952 * 298.73784 * 21 20 19 44 44 H 1.09005 * 109.54528 * 178.63247 * 21 20 19 45 45 H 1.09003 * 109.50163 * 302.32222 * 22 17 16 46 46 H 1.09000 * 109.50661 * 62.41048 * 22 17 16 47 47 H 1.09001 * 111.12682 * 33.65819 * 23 3 2 48 48 H 1.09006 * 111.12466 * 157.82260 * 23 3 2 49 49 H 1.09000 * 110.37158 * 204.79729 * 24 23 3 50 50 H 1.09004 * 110.21265 * 82.75172 * 24 23 3 51 51 H 1.08999 * 109.83349 * 238.77943 * 26 25 24 52 52 H 1.09003 * 109.91148 * 117.84271 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7238 2.0264 1.3188 5 7 2.3255 1.2749 2.4283 6 6 1.8520 -0.1156 2.4403 7 6 0.3593 -0.1362 2.6465 8 1 -0.1945 0.7904 2.6761 9 6 -0.2992 -1.3382 2.7975 10 7 0.3754 -2.4665 2.7621 11 14 -2.1494 -1.3636 3.0539 12 1 -2.8306 -1.4398 1.7366 13 1 -2.5195 -2.5466 3.8718 14 1 -2.5687 -0.1248 3.7572 15 6 3.7921 1.3311 2.3680 16 6 4.2517 2.7866 2.4750 17 7 5.7183 2.8427 2.4153 18 6 6.3185 2.2057 3.5965 19 6 7.8436 2.2333 3.4650 20 8 8.2783 3.5856 3.2996 21 6 7.7137 4.2364 2.1581 22 6 6.1873 4.2291 2.2763 23 6 1.4991 2.1380 -1.2073 24 6 2.4728 1.6660 -2.3200 25 8 3.7359 1.4782 -1.6623 26 6 3.5289 1.2307 -0.2668 27 1 -0.3635 0.6234 0.8169 28 1 -0.3633 0.3959 -0.9484 29 1 -0.3634 -1.0193 0.1313 30 1 0.6464 2.0954 1.4687 31 1 2.1508 3.0287 1.2850 32 1 2.0939 -0.5900 1.4892 33 1 2.3383 -0.6581 3.2511 34 1 -0.0879 -3.3120 2.8687 35 1 4.1333 0.9110 1.4219 36 1 4.2120 0.7560 3.1933 37 1 3.8318 3.3617 1.6497 38 1 3.9106 3.2066 3.4211 39 1 6.0207 2.7486 4.4935 40 1 5.9777 1.1727 3.6656 41 1 8.1448 1.6454 2.5980 42 1 8.2947 1.8134 4.3641 43 1 8.0111 3.7068 1.2530 44 1 8.0703 5.2654 2.1114 45 1 5.7508 4.6729 1.3816 46 1 5.8866 4.8045 3.1519 47 1 0.4672 1.8847 -1.4505 48 1 1.6059 3.2067 -1.0210 49 1 2.5596 2.4266 -3.0959 50 1 2.1265 0.7259 -2.7496 51 1 4.0457 1.9873 0.3236 52 1 3.9018 0.2401 -0.0062 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602423083.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:53 Heat of formation + Delta-G solvation = -66.933627 kcal Electronic energy + Delta-G solvation = -31699.300460 eV Core-core repulsion = 27701.661882 eV Total energy + Delta-G solvation = -3997.638578 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.44052 -39.49176 -37.22559 -36.32811 -34.90725 -32.80283 -31.31445 -31.03211 -29.79991 -29.04907 -26.87789 -26.57494 -25.90618 -24.17881 -24.08929 -22.29712 -21.58248 -20.57849 -20.30134 -19.38142 -17.14122 -16.64525 -16.40824 -16.14422 -16.02909 -15.34468 -15.12003 -15.04277 -14.79402 -14.74668 -14.72019 -14.35410 -14.26267 -13.72842 -13.59327 -13.12937 -12.76217 -12.46336 -12.29711 -12.23262 -11.89404 -11.85897 -11.53782 -11.43133 -11.23355 -11.20450 -11.04093 -10.91850 -10.75057 -10.68936 -10.63680 -10.31171 -10.23894 -9.84521 -9.77043 -9.63703 -9.23436 -9.19062 -8.96476 -8.38228 -8.30841 -6.86691 -5.99755 -3.93139 3.24181 3.34479 3.36126 3.66618 3.83106 4.11805 4.32000 4.39955 4.73736 4.79691 4.92870 4.95166 5.06461 5.09119 5.10307 5.17949 5.24175 5.33971 5.36424 5.41829 5.47261 5.52608 5.56976 5.67367 5.70761 5.75891 5.81755 5.84017 5.87252 5.91267 5.98947 6.05520 6.10693 6.17007 6.28603 6.31034 6.38677 6.45153 6.64621 6.93049 6.98007 7.00166 7.06155 7.23512 7.35350 7.74929 7.75207 7.97676 8.13166 8.29591 8.58968 9.06299 9.60440 11.10964 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.013587 B = 0.004171 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.313139 B = 6710.836191 C = 8101.582992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.339 6.339 3 C 0.055 3.945 4 C 0.049 3.951 5 N -0.529 5.529 6 C 0.166 3.834 7 C -0.492 4.492 8 H 0.056 0.944 9 C 0.059 3.941 10 N -0.889 5.889 11 Si 0.877 3.123 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.275 1.275 15 C 0.025 3.975 16 C 0.056 3.944 17 N -0.536 5.536 18 C 0.015 3.985 19 C 0.064 3.936 20 O -0.389 6.389 21 C 0.065 3.935 22 C 0.019 3.981 23 C -0.187 4.187 24 C 0.057 3.943 25 O -0.389 6.389 26 C 0.056 3.944 27 H 0.075 0.925 28 H 0.003 0.997 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.020 0.980 34 H 0.259 0.741 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.092 0.908 41 H 0.060 0.940 42 H 0.096 0.904 43 H 0.059 0.941 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.041 0.959 47 H 0.089 0.911 48 H 0.080 0.920 49 H 0.077 0.923 50 H 0.058 0.942 51 H 0.099 0.901 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.792 11.782 -4.982 15.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.258 6.258 3 C 0.013 3.987 4 C -0.081 4.081 5 N -0.252 5.252 6 C 0.042 3.958 7 C -0.531 4.531 8 H 0.074 0.926 9 C -0.142 4.142 10 N -0.529 5.529 11 Si 0.705 3.295 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.200 1.200 15 C -0.103 4.103 16 C -0.072 4.072 17 N -0.262 5.262 18 C -0.113 4.113 19 C -0.013 4.013 20 O -0.308 6.308 21 C -0.013 4.013 22 C -0.110 4.110 23 C -0.225 4.225 24 C -0.019 4.019 25 O -0.309 6.309 26 C -0.020 4.020 27 H 0.094 0.906 28 H 0.021 0.979 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.038 0.962 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.110 0.890 41 H 0.078 0.922 42 H 0.114 0.886 43 H 0.078 0.922 44 H 0.112 0.888 45 H 0.102 0.898 46 H 0.059 0.941 47 H 0.107 0.893 48 H 0.098 0.902 49 H 0.095 0.905 50 H 0.077 0.923 51 H 0.116 0.884 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.205 11.445 -4.869 15.473 hybrid contribution -1.923 -0.073 0.157 1.931 sum 7.282 11.373 -4.712 14.302 Atomic orbital electron populations 1.23074 0.80718 1.03913 0.97565 1.88081 1.20567 1.23321 1.93812 1.23833 0.93302 0.86119 0.95444 1.22538 1.01855 0.95856 0.87827 1.62361 1.03401 1.18894 1.40557 1.20393 0.95348 0.81495 0.98574 1.20960 0.92217 0.91821 1.48083 0.92601 1.24836 0.97369 0.95716 0.96257 1.69948 1.35147 0.97301 1.50486 0.86845 0.86716 0.77726 0.78228 1.20715 1.21271 1.19950 1.22694 0.90740 0.94605 1.02260 1.22244 0.85393 0.98644 1.00913 1.62174 1.08187 1.16161 1.39630 1.22838 0.95416 1.01306 0.91736 1.22687 0.93156 0.83392 1.02085 1.87954 1.69086 1.26415 1.47330 1.22643 0.91678 0.97900 0.89031 1.22755 0.96621 0.89918 1.01693 1.23930 1.01207 1.00792 0.96607 1.23262 0.83688 0.99940 0.95014 1.88384 1.28523 1.92869 1.21109 1.23993 0.94131 1.02130 0.81713 0.90645 0.97891 0.89973 0.89662 0.91922 0.93121 0.96162 0.93125 0.92036 0.91541 0.90815 0.93930 0.93956 0.88960 0.92190 0.88585 0.92222 0.88755 0.89771 0.94123 0.89289 0.90151 0.90457 0.92349 0.88358 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.85 8.24 101.05 0.83 1.68 16 2 O -0.34 -7.05 6.87 -35.23 -0.24 -7.29 16 3 C 0.06 0.95 0.41 -88.67 -0.04 0.91 16 4 C 0.05 0.85 4.26 -3.83 -0.02 0.84 16 5 N -0.53 -10.49 4.78 -236.07 -1.13 -11.62 16 6 C 0.17 4.01 4.17 -4.97 -0.02 3.99 16 7 C -0.49 -12.48 5.11 -34.44 -0.18 -12.66 16 8 H 0.06 1.42 6.07 -52.49 -0.32 1.10 16 9 C 0.06 1.56 4.54 -17.82 -0.08 1.48 16 10 N -0.89 -25.09 13.29 55.43 0.74 -24.35 16 11 Si 0.88 20.34 29.54 -169.99 -5.02 15.32 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 14 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 15 C 0.03 0.43 4.30 -3.83 -0.02 0.41 16 16 C 0.06 0.79 3.94 -3.83 -0.02 0.77 16 17 N -0.54 -6.86 4.73 -234.31 -1.11 -7.97 16 18 C 0.02 0.19 5.44 -3.71 -0.02 0.17 16 19 C 0.06 0.70 7.01 37.21 0.26 0.96 16 20 O -0.39 -4.72 10.83 -35.23 -0.38 -5.10 16 21 C 0.06 0.66 7.01 37.21 0.26 0.92 16 22 C 0.02 0.20 5.64 -3.71 -0.02 0.18 16 23 C -0.19 -2.66 6.12 -24.34 -0.15 -2.81 16 24 C 0.06 0.82 7.78 38.33 0.30 1.12 16 25 O -0.39 -6.60 11.36 -35.23 -0.40 -7.00 16 26 C 0.06 0.94 5.11 37.88 0.19 1.14 16 27 H 0.08 1.56 3.99 -51.93 -0.21 1.35 16 28 H 0.00 0.05 6.40 -51.93 -0.33 -0.28 16 29 H 0.08 1.82 7.51 -51.93 -0.39 1.43 16 30 H 0.09 1.61 5.41 -51.93 -0.28 1.33 16 31 H 0.06 0.95 5.91 -51.93 -0.31 0.65 16 32 H 0.05 1.32 4.81 -53.08 -0.26 1.07 16 33 H 0.02 0.56 8.08 -51.93 -0.42 0.14 16 34 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.06 1.08 3.31 -51.93 -0.17 0.91 16 36 H 0.07 1.18 6.46 -51.93 -0.34 0.85 16 37 H 0.07 1.01 5.28 -51.93 -0.27 0.74 16 38 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 39 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 1.16 6.38 -51.93 -0.33 0.83 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.08 0.83 8.09 -51.93 -0.42 0.41 16 46 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.09 1.23 5.94 -51.93 -0.31 0.92 16 48 H 0.08 1.00 8.03 -51.93 -0.42 0.58 16 49 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 51 H 0.10 1.57 4.17 -51.93 -0.22 1.35 16 52 H 0.08 1.48 7.04 -51.93 -0.37 1.12 16 LS Contribution 366.22 15.07 5.52 5.52 Total: -1.00 -28.93 366.22 -9.02 -37.95 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -8.29 Total: 5.44 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 1.29 Total: -0.90 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: -1.50 Total: -43.94 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -1.02 Total: -19.39 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.93 -9.02 -37.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602423083.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.980 kcal (2) G-P(sol) polarization free energy of solvation -28.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds