Wall clock time and date at job start Tue Mar 31 2020 04:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00019 * 2 1 4 4 C 1.53002 * 110.46191 * 185.30494 * 3 2 1 5 5 N 1.46896 * 109.46901 * 296.96436 * 4 3 2 6 6 C 1.46902 * 111.00107 * 199.11735 * 5 4 3 7 7 C 1.50706 * 109.47116 * 75.41195 * 6 5 4 8 8 H 1.08002 * 119.99888 * 356.20550 * 7 6 5 9 9 C 1.37877 * 119.99798 * 176.20248 * 7 6 5 10 10 N 1.31518 * 119.99970 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99819 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46781 * 90.00296 * 11 9 7 13 13 H 1.48496 * 109.46910 * 210.00400 * 11 9 7 14 14 H 1.48498 * 109.47171 * 330.00399 * 11 9 7 15 15 C 1.46904 * 111.00721 * 75.16255 * 5 4 3 16 16 C 1.53003 * 109.47270 * 200.00411 * 15 5 4 17 17 N 1.46897 * 109.46733 * 184.41029 * 16 15 5 18 18 C 1.47015 * 111.00071 * 293.63257 * 17 16 15 19 19 C 1.53099 * 109.25908 * 177.61075 * 18 17 16 20 20 O 1.43013 * 109.25629 * 56.84643 * 19 18 17 21 21 C 1.43016 * 113.74094 * 301.32986 * 20 19 18 22 22 C 1.47014 * 110.99955 * 169.99740 * 17 16 15 23 23 C 1.54512 * 110.51785 * 307.91303 * 3 2 1 24 24 C 1.54471 * 104.06401 * 118.77826 * 23 3 2 25 25 O 1.44424 * 104.80484 * 23.98383 * 24 23 3 26 26 C 1.44423 * 105.27553 * 319.48444 * 25 24 23 27 27 H 1.08994 * 109.46770 * 306.17346 * 1 2 3 28 28 H 1.09004 * 109.46764 * 66.17088 * 1 2 3 29 29 H 1.09002 * 109.47041 * 186.16880 * 1 2 3 30 30 H 1.08991 * 109.47697 * 176.96029 * 4 3 2 31 31 H 1.09005 * 109.46755 * 56.95703 * 4 3 2 32 32 H 1.08998 * 109.47525 * 195.41475 * 6 5 4 33 33 H 1.09001 * 109.47050 * 315.41551 * 6 5 4 34 34 H 0.97005 * 119.99863 * 179.97438 * 10 9 7 35 35 H 1.09004 * 109.46700 * 320.00078 * 15 5 4 36 36 H 1.09001 * 109.47039 * 80.00079 * 15 5 4 37 37 H 1.09001 * 109.46884 * 304.40505 * 16 15 5 38 38 H 1.08997 * 109.46978 * 64.40784 * 16 15 5 39 39 H 1.09006 * 109.50538 * 297.54582 * 18 17 16 40 40 H 1.08997 * 109.50849 * 57.67206 * 18 17 16 41 41 H 1.09000 * 109.50555 * 296.91289 * 19 18 17 42 42 H 1.08998 * 109.54364 * 176.80324 * 19 18 17 43 43 H 1.08994 * 109.50529 * 298.73406 * 21 20 19 44 44 H 1.09001 * 109.53756 * 178.63055 * 21 20 19 45 45 H 1.09003 * 109.50736 * 302.33010 * 22 17 16 46 46 H 1.09001 * 109.50381 * 62.41420 * 22 17 16 47 47 H 1.08993 * 110.51065 * 237.42729 * 23 3 2 48 48 H 1.09002 * 110.50638 * 359.97438 * 23 3 2 49 49 H 1.08999 * 110.37332 * 142.81359 * 24 23 3 50 50 H 1.09003 * 110.37776 * 265.03730 * 24 23 3 51 51 H 1.09003 * 110.37274 * 281.68212 * 26 25 24 52 52 H 1.08993 * 110.37577 * 159.34266 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5317 1.2135 -0.1325 5 7 4.0833 0.5112 1.0339 6 6 5.5181 0.7876 1.1849 7 6 5.7066 2.1767 1.7380 8 1 4.8503 2.8151 1.8981 9 6 6.9724 2.6326 2.0399 10 7 8.0152 1.8554 1.8446 11 14 7.2061 4.3548 2.7249 12 1 7.1379 4.3111 4.2077 13 1 8.5308 4.8787 2.3055 14 1 6.1355 5.2434 2.2060 15 6 3.8319 -0.9335 0.9462 16 6 3.9509 -1.5574 2.3381 17 7 3.8042 -3.0154 2.2353 18 6 2.4445 -3.3795 1.8113 19 6 2.3530 -4.9002 1.6596 20 8 2.7191 -5.5203 2.8952 21 6 4.0379 -5.1879 3.3377 22 6 4.1464 -3.6702 3.5063 23 6 1.4182 2.1618 -1.1417 24 6 0.7445 3.3453 -0.4126 25 8 1.4324 3.4383 0.8539 26 6 1.6243 2.0730 1.2839 27 1 -0.3633 0.6065 0.8295 28 1 -0.3633 0.4152 -0.9401 29 1 -0.3633 -1.0217 0.1104 30 1 3.9532 2.2172 -0.1851 31 1 3.7849 0.6651 -1.0399 32 1 5.9581 0.0615 1.8684 33 1 6.0065 0.7142 0.2131 34 1 8.9057 2.1763 2.0566 35 1 2.8286 -1.1046 0.5559 36 1 4.5637 -1.3898 0.2796 37 1 4.9271 -1.3193 2.7606 38 1 3.1685 -1.1580 2.9834 39 1 1.7275 -3.0446 2.5610 40 1 2.2216 -2.9043 0.8560 41 1 3.0314 -5.2289 0.8724 42 1 1.3319 -5.1800 1.4005 43 1 4.7653 -5.5250 2.5992 44 1 4.2358 -5.6754 4.2923 45 1 5.1660 -3.4073 3.7883 46 1 3.4571 -3.3395 4.2832 47 1 2.2094 2.5195 -1.8005 48 1 0.6824 1.5892 -1.7064 49 1 0.8734 4.2653 -0.9828 50 1 -0.3149 3.1417 -0.2568 51 1 0.7002 1.6733 1.7016 52 1 2.4290 2.0155 2.0168 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602423084.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:56 Heat of formation + Delta-G solvation = -106.533012 kcal Electronic energy + Delta-G solvation = -30912.242618 eV Core-core repulsion = 26912.886882 eV Total energy + Delta-G solvation = -3999.355736 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.19525 -39.42929 -37.06315 -36.47710 -35.22151 -32.54915 -31.46584 -31.12601 -29.74755 -28.90736 -27.11253 -26.65861 -25.76079 -24.08834 -23.80080 -22.69685 -21.91844 -20.39049 -20.07097 -19.53210 -17.14653 -16.54230 -16.47091 -16.11140 -16.01863 -15.39665 -15.15463 -15.02408 -14.95025 -14.67880 -14.58745 -14.36683 -14.23975 -13.88310 -13.65383 -13.31366 -12.95919 -12.58555 -12.40945 -12.13074 -12.06240 -11.72286 -11.58575 -11.46723 -11.35705 -11.29037 -11.17505 -11.05058 -10.90841 -10.68329 -10.65855 -10.51204 -10.40925 -10.12397 -9.83525 -9.62121 -9.42889 -9.16534 -9.10508 -8.39004 -8.16750 -7.25375 -5.99197 -4.00383 3.35022 3.41171 3.46478 3.72055 3.79320 3.97645 4.33965 4.46306 4.61641 4.82169 4.93033 4.98146 5.06463 5.10719 5.13862 5.18268 5.20151 5.27023 5.31221 5.32234 5.35673 5.41335 5.57212 5.60234 5.63304 5.71173 5.74251 5.78248 5.84772 5.89174 5.94126 5.97805 6.02095 6.06555 6.17789 6.37578 6.44529 6.50693 6.56676 6.69379 6.91939 7.08590 7.16600 7.25074 7.29709 7.36541 7.40250 7.86870 8.13617 8.22165 8.56808 9.08277 9.64231 11.11053 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.008507 B = 0.004893 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3290.552219 B = 5720.922352 C = 8456.868983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.361 6.361 3 C 0.096 3.904 4 C 0.088 3.912 5 N -0.533 5.533 6 C 0.192 3.808 7 C -0.504 4.504 8 H 0.064 0.936 9 C 0.056 3.944 10 N -0.899 5.899 11 Si 0.893 3.107 12 H -0.281 1.281 13 H -0.289 1.289 14 H -0.272 1.272 15 C 0.051 3.949 16 C 0.066 3.934 17 N -0.537 5.537 18 C 0.018 3.982 19 C 0.064 3.936 20 O -0.391 6.391 21 C 0.065 3.935 22 C 0.019 3.981 23 C -0.188 4.188 24 C 0.044 3.956 25 O -0.366 6.366 26 C 0.028 3.972 27 H 0.043 0.957 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.030 0.970 32 H 0.035 0.965 33 H -0.011 1.011 34 H 0.260 0.740 35 H 0.091 0.909 36 H 0.027 0.973 37 H 0.080 0.920 38 H 0.036 0.964 39 H 0.038 0.962 40 H 0.090 0.910 41 H 0.057 0.943 42 H 0.093 0.907 43 H 0.058 0.942 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.040 0.960 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.089 0.911 50 H 0.052 0.948 51 H 0.053 0.947 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.961 -8.358 -3.450 17.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.281 6.281 3 C 0.056 3.944 4 C -0.041 4.041 5 N -0.257 5.257 6 C 0.067 3.933 7 C -0.543 4.543 8 H 0.082 0.918 9 C -0.145 4.145 10 N -0.539 5.539 11 Si 0.721 3.279 12 H -0.207 1.207 13 H -0.215 1.215 14 H -0.197 1.197 15 C -0.077 4.077 16 C -0.061 4.061 17 N -0.262 5.262 18 C -0.110 4.110 19 C -0.013 4.013 20 O -0.309 6.309 21 C -0.012 4.012 22 C -0.110 4.110 23 C -0.226 4.226 24 C -0.034 4.034 25 O -0.285 6.285 26 C -0.048 4.048 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.118 0.882 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.007 0.993 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.046 0.954 37 H 0.098 0.902 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.109 0.891 41 H 0.076 0.924 42 H 0.111 0.889 43 H 0.077 0.923 44 H 0.112 0.888 45 H 0.105 0.895 46 H 0.058 0.942 47 H 0.104 0.896 48 H 0.101 0.899 49 H 0.108 0.892 50 H 0.070 0.930 51 H 0.071 0.929 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.596 -8.438 -3.152 17.152 hybrid contribution 0.021 1.180 0.006 1.180 sum -14.575 -7.259 -3.146 16.584 Atomic orbital electron populations 1.22851 0.82918 1.02254 0.99916 1.88007 1.18402 1.27054 1.94588 1.23078 0.95272 0.82780 0.93245 1.21955 0.88794 1.01079 0.92311 1.61894 1.19642 1.06343 1.37859 1.19788 0.80447 0.97371 0.95650 1.21195 0.92448 0.98827 1.41809 0.91774 1.24964 0.96001 0.97559 0.95953 1.69964 0.98556 1.36365 1.48996 0.86564 0.77318 0.84687 0.79282 1.20744 1.21461 1.19702 1.22277 1.01554 0.88811 0.95059 1.22066 1.01880 0.83975 0.98181 1.62159 1.24678 1.10041 1.29369 1.22787 0.90006 0.96347 1.01854 1.22673 1.00601 0.91630 0.86424 1.87936 1.32553 1.70536 1.39903 1.22655 0.84461 0.94008 1.00076 1.22742 1.02067 0.95065 0.91103 1.23591 1.01730 0.97857 0.99403 1.23328 0.95432 0.98761 0.85829 1.89214 1.77854 1.25674 1.35729 1.24044 1.01651 0.81142 0.97987 0.93878 0.94141 0.89988 0.88175 0.95162 0.94736 0.99306 0.93027 0.89081 0.95430 0.90151 0.94584 0.94343 0.89146 0.92446 0.88914 0.92343 0.88762 0.89513 0.94217 0.89572 0.89879 0.89247 0.92998 0.92910 0.85680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.26 101.05 1.04 1.21 16 2 O -0.36 -5.10 7.37 -35.23 -0.26 -5.36 16 3 C 0.10 1.47 0.97 -89.05 -0.09 1.38 16 4 C 0.09 1.62 3.96 -3.83 -0.02 1.61 16 5 N -0.53 -10.90 3.38 -236.06 -0.80 -11.70 16 6 C 0.19 4.83 4.55 -4.97 -0.02 4.81 16 7 C -0.50 -13.77 8.51 -34.44 -0.29 -14.07 16 8 H 0.06 1.76 7.76 -52.49 -0.41 1.35 16 9 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 11 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.05 0.93 4.57 -3.82 -0.02 0.91 16 16 C 0.07 1.15 5.11 -3.82 -0.02 1.13 16 17 N -0.54 -8.06 4.73 -234.31 -1.11 -9.16 16 18 C 0.02 0.24 5.44 -3.71 -0.02 0.22 16 19 C 0.06 0.73 7.01 37.21 0.26 1.00 16 20 O -0.39 -5.10 10.83 -35.23 -0.38 -5.48 16 21 C 0.07 0.76 7.01 37.20 0.26 1.02 16 22 C 0.02 0.25 5.64 -3.71 -0.02 0.23 16 23 C -0.19 -2.36 5.98 -25.17 -0.15 -2.51 16 24 C 0.04 0.55 7.63 37.93 0.29 0.84 16 25 O -0.37 -6.17 11.65 -35.23 -0.41 -6.58 16 26 C 0.03 0.46 6.62 37.94 0.25 0.71 16 27 H 0.04 0.45 6.05 -51.93 -0.31 0.14 16 28 H 0.04 0.37 6.25 -51.93 -0.32 0.05 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.10 2.07 7.25 -51.93 -0.38 1.69 16 31 H 0.03 0.56 8.01 -51.93 -0.42 0.14 16 32 H 0.03 0.94 6.47 -51.93 -0.34 0.60 16 33 H -0.01 -0.30 8.00 -51.93 -0.42 -0.71 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.09 1.54 3.35 -51.93 -0.17 1.36 16 36 H 0.03 0.54 7.99 -51.93 -0.42 0.13 16 37 H 0.08 1.58 6.58 -51.93 -0.34 1.24 16 38 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 39 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.09 1.17 6.48 -51.93 -0.34 0.83 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.09 1.15 8.09 -51.93 -0.42 0.73 16 46 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.09 1.09 7.73 -51.93 -0.40 0.69 16 48 H 0.08 0.89 6.00 -51.93 -0.31 0.58 16 49 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 50 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.05 0.77 5.97 -51.93 -0.31 0.46 16 52 H 0.13 2.40 7.19 -51.93 -0.37 2.03 16 LS Contribution 389.72 15.07 5.87 5.87 Total: -1.00 -30.42 389.72 -9.05 -39.47 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -9.04 Total: 2.01 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 1.36 Total: -0.02 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -1.17 Total: -46.58 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -1.05 Total: -17.43 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.42 -9.05 -39.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602423084.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.068 kcal (2) G-P(sol) polarization free energy of solvation -30.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds