Wall clock time and date at job start Tue Mar 31 2020 04:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99919 * 2 1 4 4 C 1.53003 * 109.46936 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.47246 * 63.45675 * 4 3 2 6 6 C 1.46893 * 111.00205 * 199.20897 * 5 4 3 7 7 C 1.46903 * 110.99757 * 75.25422 * 5 4 3 8 8 C 1.53003 * 109.46923 * 189.99931 * 7 5 4 9 9 N 1.46501 * 109.47081 * 180.02562 * 8 7 5 10 10 C 1.34774 * 119.99950 * 179.97438 * 9 8 7 11 11 O 1.21582 * 120.00291 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99877 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00188 * 180.02562 * 12 10 9 14 14 C 1.53079 * 109.44034 * 84.79050 * 13 12 10 15 15 C 1.53199 * 109.29410 * 181.23704 * 14 13 12 16 16 N 1.46931 * 108.89172 * 305.58564 * 15 14 13 17 17 C 1.36935 * 120.62726 * 233.51465 * 16 15 14 18 18 H 1.08001 * 120.00242 * 148.86274 * 17 16 15 19 19 C 1.38817 * 120.00044 * 328.86286 * 17 16 15 20 20 N 1.31622 * 120.00158 * 161.13208 * 19 17 16 21 21 Si 1.86802 * 119.99740 * 341.12894 * 19 17 16 22 22 H 1.48497 * 109.47277 * 91.78319 * 21 19 17 23 23 H 1.48508 * 109.47024 * 211.78298 * 21 19 17 24 24 H 1.48500 * 109.47390 * 331.77770 * 21 19 17 25 25 C 1.46919 * 118.73873 * 53.53576 * 16 15 14 26 26 C 1.53032 * 109.46357 * 205.00004 * 13 12 10 27 27 H 1.09008 * 109.46548 * 60.00363 * 1 2 3 28 28 H 1.09003 * 109.47368 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47215 * 300.00776 * 1 2 3 30 30 H 1.09000 * 109.47555 * 59.99955 * 3 2 1 31 31 H 1.09001 * 109.47127 * 299.99038 * 3 2 1 32 32 H 1.09003 * 109.47324 * 303.46014 * 4 3 2 33 33 H 1.08998 * 109.47015 * 183.45676 * 4 3 2 34 34 H 1.09005 * 109.47362 * 295.55353 * 6 5 4 35 35 H 1.09001 * 109.46986 * 55.55087 * 6 5 4 36 36 H 1.08997 * 109.47740 * 175.54762 * 6 5 4 37 37 H 1.08998 * 109.46617 * 70.00392 * 7 5 4 38 38 H 1.08991 * 109.47565 * 310.00186 * 7 5 4 39 39 H 1.08998 * 109.46732 * 60.00355 * 8 7 5 40 40 H 1.08998 * 109.47059 * 300.00099 * 8 7 5 41 41 H 0.97001 * 120.00100 * 0.02562 * 9 8 7 42 42 H 0.97000 * 120.00110 * 359.97438 * 12 10 9 43 43 H 1.09002 * 109.45703 * 324.97768 * 13 12 10 44 44 H 1.09002 * 109.38671 * 61.36785 * 14 13 12 45 45 H 1.08997 * 109.62548 * 301.25717 * 14 13 12 46 46 H 1.08999 * 109.58669 * 185.72537 * 15 14 13 47 47 H 1.08996 * 109.58398 * 65.44098 * 15 14 13 48 48 H 0.96996 * 119.99405 * 179.97438 * 20 19 17 49 49 H 1.08997 * 109.58797 * 66.18189 * 25 16 15 50 50 H 1.09008 * 109.58671 * 186.46133 * 25 16 15 51 51 H 1.09001 * 109.49386 * 58.67111 * 26 13 12 52 52 H 1.08998 * 109.52321 * 298.59492 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9753 0.5287 -1.2381 6 6 5.3331 -0.0127 -1.0936 7 6 3.8947 1.4505 -2.3791 8 6 4.1172 0.6742 -3.6786 9 7 4.0374 1.5935 -4.8164 10 6 4.2037 1.1294 -6.0707 11 8 4.4195 -0.0524 -6.2581 12 7 4.1308 1.9753 -7.1175 13 6 4.3111 1.4707 -8.4810 14 6 2.9776 0.9321 -9.0053 15 6 3.1766 0.3773 -10.4194 16 7 3.7814 1.4205 -11.2590 17 6 3.2026 1.7834 -12.4457 18 1 3.2969 2.7977 -12.8046 19 6 2.4947 0.8477 -13.1876 20 7 1.6413 1.2460 -14.1071 21 14 2.7533 -0.9767 -12.8808 22 1 1.7706 -1.4537 -11.8749 23 1 2.5646 -1.7237 -14.1503 24 1 4.1305 -1.2030 -12.3734 25 6 5.0190 2.0664 -10.8012 26 6 4.7989 2.6056 -9.3843 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8463 -0.8901 32 1 3.8526 0.5912 0.8582 33 1 3.9786 2.1785 0.0626 34 1 6.0365 0.8060 -0.9411 35 1 5.3668 -0.6852 -0.2364 36 1 5.6037 -0.5608 -1.9961 37 1 4.6607 2.2195 -2.2795 38 1 2.9105 1.9185 -2.3993 39 1 3.3512 -0.0949 -3.7780 40 1 5.1014 0.2063 -3.6583 41 1 3.8656 2.5365 -4.6670 42 1 3.9583 2.9181 -6.9681 43 1 5.0481 0.6677 -8.4765 44 1 2.2461 1.7398 -9.0311 45 1 2.6204 0.1379 -8.3498 46 1 2.2127 0.0857 -10.8365 47 1 3.8361 -0.4897 -10.3822 48 1 1.1470 0.5921 -14.6256 49 1 5.8299 1.3381 -10.7931 50 1 5.2722 2.8877 -11.4717 51 1 5.7371 3.0019 -8.9960 52 1 4.0515 3.3986 -9.4089 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609337352.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:02 Heat of formation + Delta-G solvation = -41.600521 kcal Electronic energy + Delta-G solvation = -28473.408026 eV Core-core repulsion = 24509.160725 eV Total energy + Delta-G solvation = -3964.247301 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.226 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.06682 -38.92292 -37.83183 -37.27001 -34.79732 -34.37773 -32.16392 -30.94007 -30.34801 -30.09838 -28.80563 -26.81368 -25.51396 -24.71864 -23.09876 -22.75611 -21.85440 -21.26034 -20.57083 -19.70299 -18.15285 -16.99966 -16.90087 -16.71305 -16.39626 -15.90051 -15.70766 -15.23292 -15.00213 -14.94866 -14.56034 -14.15964 -14.04663 -13.92129 -13.67410 -13.63213 -13.09487 -13.03482 -12.83163 -12.51899 -12.30960 -12.23054 -12.07450 -11.92001 -11.74164 -11.71858 -11.61223 -11.16307 -10.99546 -10.78043 -10.55689 -10.19236 -10.07806 -9.99388 -9.98553 -9.76030 -9.49439 -9.18324 -8.76573 -8.66692 -8.53365 -6.90631 -5.92949 -3.32323 2.63599 3.34229 3.39186 3.40813 3.53245 3.54343 3.58478 4.31790 4.43895 4.57298 4.57670 4.63796 4.73800 4.86944 4.90557 5.01107 5.02086 5.05469 5.10018 5.17356 5.18169 5.21322 5.34537 5.36318 5.37950 5.47148 5.53272 5.67930 5.71211 5.76722 5.88143 6.08407 6.17689 6.19778 6.34777 6.36606 6.48652 6.53645 6.59596 6.61542 6.70002 6.73996 6.82465 6.86647 6.91569 7.07147 8.02185 8.09798 8.36264 8.72075 8.97104 9.74529 10.14004 11.22924 Molecular weight = 328.23amu Principal moments of inertia in cm(-1) A = 0.019439 B = 0.002066 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.032963 B =13549.028848 C =14167.905116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.065 3.935 4 C 0.057 3.943 5 N -0.529 5.529 6 C 0.020 3.980 7 C 0.043 3.957 8 C 0.143 3.857 9 N -0.752 5.752 10 C 0.703 3.297 11 O -0.588 6.588 12 N -0.740 5.740 13 C 0.169 3.831 14 C -0.141 4.141 15 C 0.129 3.871 16 N -0.607 5.607 17 C -0.261 4.261 18 H 0.084 0.916 19 C 0.026 3.974 20 N -0.909 5.909 21 Si 0.883 3.117 22 H -0.287 1.287 23 H -0.303 1.303 24 H -0.269 1.269 25 C 0.151 3.849 26 C -0.140 4.140 27 H 0.040 0.960 28 H 0.085 0.915 29 H 0.037 0.963 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.025 0.975 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.039 0.961 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.392 0.608 42 H 0.391 0.609 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.073 0.927 47 H 0.027 0.973 48 H 0.263 0.737 49 H 0.025 0.975 50 H 0.068 0.932 51 H 0.059 0.941 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.850 4.499 31.212 31.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.292 6.292 3 C -0.012 4.012 4 C -0.071 4.071 5 N -0.254 5.254 6 C -0.127 4.127 7 C -0.085 4.085 8 C 0.018 3.982 9 N -0.409 5.409 10 C 0.403 3.597 11 O -0.465 6.465 12 N -0.393 5.393 13 C 0.065 3.935 14 C -0.181 4.181 15 C 0.003 3.997 16 N -0.330 5.330 17 C -0.390 4.390 18 H 0.101 0.899 19 C -0.173 4.173 20 N -0.552 5.552 21 Si 0.713 3.287 22 H -0.214 1.214 23 H -0.231 1.231 24 H -0.194 1.194 25 C 0.024 3.976 26 C -0.179 4.179 27 H 0.059 0.941 28 H 0.104 0.896 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.058 0.942 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.225 0.775 42 H 0.224 0.776 43 H 0.100 0.900 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.091 0.909 47 H 0.045 0.955 48 H 0.072 0.928 49 H 0.043 0.957 50 H 0.086 0.914 51 H 0.078 0.922 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.750 2.772 30.784 31.135 hybrid contribution 0.081 0.817 0.472 0.947 sum 3.831 3.589 31.256 31.694 Atomic orbital electron populations 1.22743 0.81427 1.02833 0.99642 1.87996 1.19085 1.26932 1.95235 1.22551 0.93351 0.85472 0.99847 1.22161 0.93976 0.98089 0.92923 1.61759 1.24950 1.35662 1.02991 1.22500 0.87677 0.99258 1.03313 1.22313 1.01636 0.93946 0.90624 1.21044 1.02652 0.91956 0.82506 1.45026 1.79208 1.11655 1.05015 1.15947 0.78098 0.85411 0.80274 1.90936 1.56191 1.14903 1.84505 1.45448 1.77279 1.10636 1.05983 1.20852 0.97969 0.96781 0.77932 1.22408 0.96808 1.00764 0.98145 1.21310 0.97898 0.91155 0.89300 1.44383 1.24103 1.43725 1.20830 1.18879 1.28859 0.95598 0.95626 0.89870 1.25371 0.98018 0.97885 0.96072 1.69824 1.25750 1.33927 1.25697 0.86920 0.78970 0.86929 0.75868 1.21433 1.23096 1.19431 1.20876 0.88604 0.96287 0.91784 1.22326 1.00425 0.97612 0.97582 0.94134 0.89607 0.94478 0.93114 0.93310 0.89675 0.93000 0.95597 0.91044 0.90599 0.94244 0.90255 0.90676 0.91674 0.77480 0.77567 0.89993 0.91832 0.92304 0.90859 0.95549 0.92767 0.95720 0.91379 0.92225 0.91473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.37 -3.45 10.63 -35.23 -0.37 -3.82 16 3 C 0.07 0.43 6.11 37.16 0.23 0.66 16 4 C 0.06 0.35 5.39 -3.82 -0.02 0.33 16 5 N -0.53 -4.16 4.62 -242.92 -1.12 -5.28 16 6 C 0.02 0.14 9.27 60.06 0.56 0.70 16 7 C 0.04 0.31 4.90 -3.82 -0.02 0.29 16 8 C 0.14 1.45 5.60 -4.04 -0.02 1.43 16 9 N -0.75 -7.79 5.56 -65.23 -0.36 -8.15 16 10 C 0.70 10.36 8.53 -86.92 -0.74 9.62 16 11 O -0.59 -11.43 16.01 5.29 0.08 -11.35 16 12 N -0.74 -9.90 5.08 -58.62 -0.30 -10.20 16 13 C 0.17 2.80 2.41 -67.87 -0.16 2.64 16 14 C -0.14 -2.69 5.66 -26.59 -0.15 -2.85 16 15 C 0.13 2.95 4.21 -3.70 -0.02 2.94 16 16 N -0.61 -14.50 2.72 -172.32 -0.47 -14.97 16 17 C -0.26 -7.32 10.01 -15.06 -0.15 -7.47 16 18 H 0.08 2.47 8.06 -52.49 -0.42 2.04 16 19 C 0.03 0.75 5.23 -17.43 -0.09 0.66 16 20 N -0.91 -28.08 13.97 55.49 0.78 -27.31 16 21 Si 0.88 23.04 24.38 -169.99 -4.14 18.89 16 22 H -0.29 -7.30 6.65 56.52 0.38 -6.93 16 23 H -0.30 -7.99 7.11 56.52 0.40 -7.58 16 24 H -0.27 -6.96 6.72 56.52 0.38 -6.58 16 25 C 0.15 2.93 6.52 -3.72 -0.02 2.91 16 26 C -0.14 -2.18 5.55 -26.62 -0.15 -2.32 16 27 H 0.04 0.26 8.14 -51.92 -0.42 -0.17 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.31 6.67 -51.93 -0.35 -0.04 16 32 H 0.08 0.51 7.83 -51.93 -0.41 0.10 16 33 H 0.05 0.24 8.01 -51.93 -0.42 -0.17 16 34 H 0.03 0.16 8.14 -51.93 -0.42 -0.27 16 35 H 0.07 0.45 7.97 -51.93 -0.41 0.04 16 36 H 0.08 0.58 6.49 -51.93 -0.34 0.25 16 37 H 0.04 0.25 8.12 -51.93 -0.42 -0.18 16 38 H 0.08 0.53 6.55 -51.93 -0.34 0.19 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.72 6.56 -51.93 -0.34 0.38 16 41 H 0.39 2.78 8.49 -40.82 -0.35 2.43 16 42 H 0.39 3.97 8.62 -40.82 -0.35 3.62 16 43 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.07 1.82 4.86 -51.93 -0.25 1.57 16 47 H 0.03 0.61 7.04 -51.93 -0.37 0.25 16 48 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 49 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.07 1.29 7.93 -51.92 -0.41 0.88 16 51 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 52 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 402.47 15.07 6.07 6.07 Total: -1.00 -35.28 402.47 -8.89 -44.18 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -9.40 Total: 1.10 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: 0.35 Total: 10.84 kcal Atomic # 7 Polarization: -64.43 SS G_CDS: -1.48 Total: -65.91 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.29 Total: -15.17 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -4.14 Total: 18.89 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.28 -8.89 -44.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609337352.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.578 kcal (2) G-P(sol) polarization free energy of solvation -35.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds