Wall clock time and date at job start Tue Mar 31 2020 04:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99919 * 2 1 4 4 C 1.53003 * 109.46936 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.47246 * 63.45675 * 4 3 2 6 6 C 1.46893 * 111.00205 * 199.20897 * 5 4 3 7 7 C 1.46903 * 110.99757 * 75.25422 * 5 4 3 8 8 C 1.53003 * 109.46923 * 189.99931 * 7 5 4 9 9 N 1.46501 * 109.47081 * 180.02562 * 8 7 5 10 10 C 1.34774 * 119.99950 * 179.97438 * 9 8 7 11 11 O 1.21582 * 120.00291 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99877 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00188 * 180.02562 * 12 10 9 14 14 C 1.53079 * 109.44034 * 84.79050 * 13 12 10 15 15 C 1.53199 * 109.29410 * 181.23704 * 14 13 12 16 16 N 1.46931 * 108.89172 * 305.58564 * 15 14 13 17 17 C 1.36935 * 120.62726 * 233.51465 * 16 15 14 18 18 H 1.08001 * 120.00242 * 148.86274 * 17 16 15 19 19 C 1.38817 * 120.00044 * 328.86286 * 17 16 15 20 20 N 1.31622 * 120.00158 * 161.13208 * 19 17 16 21 21 Si 1.86802 * 119.99740 * 341.12894 * 19 17 16 22 22 H 1.48497 * 109.47277 * 91.78319 * 21 19 17 23 23 H 1.48508 * 109.47024 * 211.78298 * 21 19 17 24 24 H 1.48500 * 109.47390 * 331.77770 * 21 19 17 25 25 C 1.46919 * 118.73873 * 53.53576 * 16 15 14 26 26 C 1.53032 * 109.46357 * 205.00004 * 13 12 10 27 27 H 1.09008 * 109.46548 * 60.00363 * 1 2 3 28 28 H 1.09003 * 109.47368 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47215 * 300.00776 * 1 2 3 30 30 H 1.09000 * 109.47555 * 59.99955 * 3 2 1 31 31 H 1.09001 * 109.47127 * 299.99038 * 3 2 1 32 32 H 1.09003 * 109.47324 * 303.46014 * 4 3 2 33 33 H 1.08998 * 109.47015 * 183.45676 * 4 3 2 34 34 H 1.09005 * 109.47362 * 295.55353 * 6 5 4 35 35 H 1.09001 * 109.46986 * 55.55087 * 6 5 4 36 36 H 1.08997 * 109.47740 * 175.54762 * 6 5 4 37 37 H 1.08998 * 109.46617 * 70.00392 * 7 5 4 38 38 H 1.08991 * 109.47565 * 310.00186 * 7 5 4 39 39 H 1.08998 * 109.46732 * 60.00355 * 8 7 5 40 40 H 1.08998 * 109.47059 * 300.00099 * 8 7 5 41 41 H 0.97001 * 120.00100 * 0.02562 * 9 8 7 42 42 H 0.97000 * 120.00110 * 359.97438 * 12 10 9 43 43 H 1.09002 * 109.45703 * 324.97768 * 13 12 10 44 44 H 1.09002 * 109.38671 * 61.36785 * 14 13 12 45 45 H 1.08997 * 109.62548 * 301.25717 * 14 13 12 46 46 H 1.08999 * 109.58669 * 185.72537 * 15 14 13 47 47 H 1.08996 * 109.58398 * 65.44098 * 15 14 13 48 48 H 0.96996 * 119.99405 * 179.97438 * 20 19 17 49 49 H 1.08997 * 109.58797 * 66.18189 * 25 16 15 50 50 H 1.09008 * 109.58671 * 186.46133 * 25 16 15 51 51 H 1.09001 * 109.49386 * 58.67111 * 26 13 12 52 52 H 1.08998 * 109.52321 * 298.59492 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9753 0.5287 -1.2381 6 6 5.3331 -0.0127 -1.0936 7 6 3.8947 1.4505 -2.3791 8 6 4.1172 0.6742 -3.6786 9 7 4.0374 1.5935 -4.8164 10 6 4.2037 1.1294 -6.0707 11 8 4.4195 -0.0524 -6.2581 12 7 4.1308 1.9753 -7.1175 13 6 4.3111 1.4707 -8.4810 14 6 2.9776 0.9321 -9.0053 15 6 3.1766 0.3773 -10.4194 16 7 3.7814 1.4205 -11.2590 17 6 3.2026 1.7834 -12.4457 18 1 3.2969 2.7977 -12.8046 19 6 2.4947 0.8477 -13.1876 20 7 1.6413 1.2460 -14.1071 21 14 2.7533 -0.9767 -12.8808 22 1 1.7706 -1.4537 -11.8749 23 1 2.5646 -1.7237 -14.1503 24 1 4.1305 -1.2030 -12.3734 25 6 5.0190 2.0664 -10.8012 26 6 4.7989 2.6056 -9.3843 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8463 -0.8901 32 1 3.8526 0.5912 0.8582 33 1 3.9786 2.1785 0.0626 34 1 6.0365 0.8060 -0.9411 35 1 5.3668 -0.6852 -0.2364 36 1 5.6037 -0.5608 -1.9961 37 1 4.6607 2.2195 -2.2795 38 1 2.9105 1.9185 -2.3993 39 1 3.3512 -0.0949 -3.7780 40 1 5.1014 0.2063 -3.6583 41 1 3.8656 2.5365 -4.6670 42 1 3.9583 2.9181 -6.9681 43 1 5.0481 0.6677 -8.4765 44 1 2.2461 1.7398 -9.0311 45 1 2.6204 0.1379 -8.3498 46 1 2.2127 0.0857 -10.8365 47 1 3.8361 -0.4897 -10.3822 48 1 1.1470 0.5921 -14.6256 49 1 5.8299 1.3381 -10.7931 50 1 5.2722 2.8877 -11.4717 51 1 5.7371 3.0019 -8.9960 52 1 4.0515 3.3986 -9.4089 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609337352.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:02 Heat of formation + Delta-G solvation = -70.568915 kcal Electronic energy + Delta-G solvation = -28474.664189 eV Core-core repulsion = 24509.160725 eV Total energy + Delta-G solvation = -3965.503465 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.226 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.23906 -39.60456 -39.19295 -37.96560 -36.11912 -35.59438 -34.04119 -32.04605 -31.94425 -31.15131 -29.64683 -27.34459 -26.82328 -25.83525 -24.39398 -23.98577 -23.26631 -22.02202 -21.58198 -21.23326 -19.33627 -18.73552 -17.81072 -17.43711 -17.26443 -17.04517 -16.67532 -16.35036 -15.94417 -15.91797 -15.65029 -15.54588 -15.33169 -15.19149 -14.98709 -14.57997 -14.50175 -14.30858 -14.03770 -13.81175 -13.48625 -13.40214 -13.02395 -12.84604 -12.71115 -12.58919 -12.54778 -12.33427 -12.20689 -12.20019 -12.06689 -11.76187 -11.67864 -11.52464 -11.47953 -11.26950 -10.75086 -10.51646 -10.32374 -9.74835 -9.27024 -8.90686 -8.18190 -5.52640 1.29716 1.39153 1.48322 1.63331 2.17399 2.40487 2.85241 3.00875 3.05381 3.31979 3.44774 3.82032 3.83833 3.97822 4.02247 4.10751 4.24939 4.26469 4.32865 4.36568 4.45725 4.48035 4.54202 4.56211 4.60478 4.65542 4.67258 4.69903 4.71863 4.83719 4.88893 4.90457 4.92819 4.95959 4.98537 5.04768 5.09865 5.10151 5.17535 5.42846 5.47029 5.57990 5.89515 6.01436 6.05397 6.07032 6.14261 6.38527 6.91766 7.14421 7.60825 7.61851 8.04303 9.01500 Molecular weight = 328.23amu Principal moments of inertia in cm(-1) A = 0.019439 B = 0.002066 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.032963 B =13549.028848 C =14167.905116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.060 3.940 4 C 0.058 3.942 5 N -0.551 5.551 6 C 0.023 3.977 7 C 0.055 3.945 8 C 0.148 3.852 9 N -0.730 5.730 10 C 0.699 3.301 11 O -0.638 6.638 12 N -0.724 5.724 13 C 0.179 3.821 14 C -0.130 4.130 15 C 0.127 3.873 16 N -0.619 5.619 17 C -0.244 4.244 18 H 0.060 0.940 19 C -0.029 4.029 20 N -0.954 5.954 21 Si 0.937 3.063 22 H -0.281 1.281 23 H -0.308 1.308 24 H -0.265 1.265 25 C 0.142 3.858 26 C -0.123 4.123 27 H 0.040 0.960 28 H 0.085 0.915 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.038 0.962 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.413 0.587 42 H 0.412 0.588 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.048 0.952 47 H 0.023 0.977 48 H 0.261 0.739 49 H 0.032 0.968 50 H 0.070 0.930 51 H 0.097 0.903 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.894 6.034 34.024 34.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.016 4.016 4 C -0.070 4.070 5 N -0.276 5.276 6 C -0.125 4.125 7 C -0.073 4.073 8 C 0.023 3.977 9 N -0.388 5.388 10 C 0.399 3.601 11 O -0.519 6.519 12 N -0.379 5.379 13 C 0.073 3.927 14 C -0.170 4.170 15 C 0.001 3.999 16 N -0.344 5.344 17 C -0.373 4.373 18 H 0.078 0.922 19 C -0.224 4.224 20 N -0.600 5.600 21 Si 0.767 3.233 22 H -0.208 1.208 23 H -0.236 1.236 24 H -0.190 1.190 25 C 0.017 3.983 26 C -0.162 4.162 27 H 0.059 0.941 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.249 0.751 42 H 0.248 0.752 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.041 0.959 48 H 0.070 0.930 49 H 0.050 0.950 50 H 0.089 0.911 51 H 0.115 0.885 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.812 4.376 33.679 34.301 hybrid contribution -0.219 0.398 -0.326 0.559 sum 4.593 4.773 33.352 34.004 Atomic orbital electron populations 1.22830 0.80547 1.03172 1.00384 1.87952 1.20287 1.28685 1.95438 1.22716 0.93525 0.84655 1.00745 1.22213 0.93789 0.99010 0.91977 1.61714 1.25488 1.36543 1.03877 1.22459 0.87701 0.99620 1.02744 1.22189 1.02720 0.93616 0.88811 1.20996 1.01110 0.91873 0.83751 1.44789 1.77623 1.12792 1.03586 1.16140 0.77800 0.84748 0.81432 1.90912 1.58377 1.17241 1.85380 1.45055 1.76902 1.11514 1.04472 1.20530 0.95772 0.96811 0.79588 1.22242 0.98545 1.00541 0.95672 1.21254 0.96437 0.91094 0.91106 1.44514 1.25795 1.44160 1.19889 1.18870 1.27483 0.94461 0.96535 0.92248 1.25920 0.98566 1.01322 0.96626 1.69930 1.27518 1.34912 1.27600 0.86028 0.79019 0.82802 0.75449 1.20782 1.23616 1.19002 1.21124 0.86756 0.96303 0.94111 1.22136 1.02498 0.96906 0.94667 0.94106 0.89610 0.92952 0.91343 0.93176 0.89732 0.90905 0.94356 0.90785 0.91977 0.92323 0.89406 0.93448 0.92710 0.75081 0.75164 0.91755 0.91669 0.92839 0.93332 0.95903 0.92958 0.95002 0.91108 0.88488 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.40 -7.02 10.63 -148.98 -1.58 -8.61 16 3 C 0.06 0.67 6.11 71.98 0.44 1.11 16 4 C 0.06 0.58 5.39 86.30 0.47 1.04 16 5 N -0.55 -7.72 4.62 -922.45 -4.26 -11.98 16 6 C 0.02 0.28 9.27 127.69 1.18 1.47 16 7 C 0.05 0.66 4.90 86.30 0.42 1.08 16 8 C 0.15 2.80 5.60 86.38 0.48 3.29 16 9 N -0.73 -13.36 5.56 -478.54 -2.66 -16.02 16 10 C 0.70 19.24 8.53 179.05 1.53 20.77 16 11 O -0.64 -24.44 16.01 -3.98 -0.06 -24.50 16 12 N -0.72 -17.22 5.08 -457.64 -2.33 -19.55 16 13 C 0.18 5.50 2.41 45.03 0.11 5.61 16 14 C -0.13 -4.80 5.66 30.69 0.17 -4.62 16 15 C 0.13 5.72 4.21 86.36 0.36 6.08 16 16 N -0.62 -29.13 2.72 -699.09 -1.90 -31.03 16 17 C -0.24 -13.76 10.01 84.03 0.84 -12.92 16 18 H 0.06 3.59 8.06 -2.91 -0.02 3.57 16 19 C -0.03 -1.73 5.23 84.86 0.44 -1.28 16 20 N -0.95 -60.29 13.97 21.65 0.30 -59.98 16 21 Si 0.94 48.42 24.38 68.60 1.67 50.09 16 22 H -0.28 -14.06 6.65 99.48 0.66 -13.40 16 23 H -0.31 -15.97 7.11 99.48 0.71 -15.27 16 24 H -0.27 -13.35 6.72 99.48 0.67 -12.68 16 25 C 0.14 5.22 6.52 86.36 0.56 5.78 16 26 C -0.12 -3.40 5.55 30.67 0.17 -3.23 16 27 H 0.04 0.48 8.14 -2.38 -0.02 0.46 16 28 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.53 6.67 -2.39 -0.02 0.51 16 32 H 0.08 0.85 7.83 -2.39 -0.02 0.84 16 33 H 0.07 0.43 8.01 -2.39 -0.02 0.41 16 34 H 0.04 0.38 8.14 -2.38 -0.02 0.36 16 35 H 0.07 0.86 7.97 -2.39 -0.02 0.84 16 36 H 0.06 0.93 6.49 -2.39 -0.02 0.92 16 37 H 0.06 0.51 8.12 -2.39 -0.02 0.49 16 38 H 0.09 0.92 6.55 -2.39 -0.02 0.91 16 39 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.05 1.18 6.56 -2.39 -0.02 1.16 16 41 H 0.41 4.32 8.49 -92.71 -0.79 3.53 16 42 H 0.41 6.63 8.62 -92.71 -0.80 5.83 16 43 H 0.06 2.28 7.58 -2.39 -0.02 2.26 16 44 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.05 2.42 4.86 -2.39 -0.01 2.40 16 47 H 0.02 1.05 7.04 -2.39 -0.02 1.04 16 48 H 0.26 15.78 8.31 -92.71 -0.77 15.00 16 49 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.07 2.55 7.93 -2.38 -0.02 2.53 16 51 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 52 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -78.39 402.47 -3.15 -81.53 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -0.76 Total: 14.29 kcal Atomic # 6 Polarization: 17.33 SS G_CDS: 8.43 Total: 25.76 kcal Atomic # 7 Polarization: -127.72 SS G_CDS: -10.85 Total: -138.56 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -1.65 Total: -33.11 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 1.67 Total: 50.09 kcal Total: -78.39 -3.15 -81.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609337352.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.964 kcal (2) G-P(sol) polarization free energy of solvation -78.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds