Wall clock time and date at job start Tue Mar 31 2020 04:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46905 * 110.99937 * 2 1 4 4 C 1.46892 * 111.00167 * 123.95514 * 2 1 3 5 5 C 1.53004 * 109.47326 * 164.54726 * 4 2 1 6 6 C 1.52997 * 109.47347 * 176.98876 * 5 4 2 7 7 N 1.46499 * 109.47377 * 184.73625 * 6 5 4 8 8 C 1.46501 * 120.00152 * 93.43004 * 7 6 5 9 9 C 1.50699 * 109.46895 * 81.71181 * 8 7 6 10 10 H 1.07996 * 120.00265 * 232.45679 * 9 8 7 11 11 C 1.37878 * 120.00229 * 52.17554 * 9 8 7 12 12 N 1.31513 * 120.00041 * 331.89069 * 11 9 8 13 13 Si 1.86806 * 120.00139 * 151.88748 * 11 9 8 14 14 H 1.48501 * 109.46766 * 60.00214 * 13 11 9 15 15 H 1.48498 * 109.46890 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.46840 * 300.00369 * 13 11 9 17 17 C 1.34774 * 119.99849 * 273.43606 * 7 6 5 18 18 O 1.21276 * 120.00297 * 359.97438 * 17 7 6 19 19 C 1.50707 * 120.00065 * 179.97438 * 17 7 6 20 20 O 1.42894 * 109.47083 * 180.02562 * 19 17 7 21 21 C 1.42905 * 114.00177 * 180.02562 * 20 19 17 22 22 C 1.52995 * 109.47102 * 179.97438 * 21 20 19 23 23 H 1.08997 * 109.87423 * 53.99636 * 22 21 20 24 24 C 1.54110 * 109.87666 * 174.99912 * 22 21 20 25 25 C 1.54805 * 104.18618 * 121.45052 * 24 22 21 26 26 C 1.54992 * 102.09599 * 20.88177 * 25 24 22 27 27 O 1.43744 * 109.88099 * 292.82562 * 22 21 20 28 28 H 1.08996 * 109.47246 * 296.04217 * 1 2 3 29 29 H 1.09003 * 109.47756 * 56.04678 * 1 2 3 30 30 H 1.09005 * 109.47104 * 176.04440 * 1 2 3 31 31 H 1.08999 * 109.47049 * 190.48644 * 3 2 1 32 32 H 1.09007 * 109.46757 * 310.48695 * 3 2 1 33 33 H 1.09004 * 109.46810 * 70.48424 * 3 2 1 34 34 H 1.09001 * 109.47444 * 44.54575 * 4 2 1 35 35 H 1.09008 * 109.47256 * 284.54664 * 4 2 1 36 36 H 1.09001 * 109.46577 * 56.98854 * 5 4 2 37 37 H 1.08997 * 109.47279 * 296.99426 * 5 4 2 38 38 H 1.09005 * 109.47073 * 64.73542 * 6 5 4 39 39 H 1.09000 * 109.47141 * 304.73477 * 6 5 4 40 40 H 1.09002 * 109.47115 * 321.71428 * 8 7 6 41 41 H 1.09000 * 109.47394 * 201.70715 * 8 7 6 42 42 H 0.97005 * 120.00528 * 185.05493 * 12 11 9 43 43 H 1.09001 * 109.46923 * 299.99957 * 19 17 7 44 44 H 1.08997 * 109.46699 * 60.00163 * 19 17 7 45 45 H 1.09000 * 109.46371 * 299.99885 * 21 20 19 46 46 H 1.08999 * 109.46734 * 59.99657 * 21 20 19 47 47 H 1.08999 * 110.48514 * 240.13336 * 24 22 21 48 48 H 1.09000 * 110.48631 * 2.77618 * 24 22 21 49 49 H 1.09009 * 110.90158 * 139.07880 * 25 24 22 50 50 H 1.08998 * 110.91006 * 262.64429 * 25 24 22 51 51 H 1.09004 * 110.61728 * 81.47231 * 26 25 24 52 52 H 1.08997 * 110.62301 * 204.46939 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.4762 -1.0724 0.9045 6 6 4.0433 -1.8046 2.1223 7 7 5.4851 -1.9978 1.9483 8 6 6.4268 -1.0180 2.4956 9 6 6.6419 -1.2926 3.9616 10 1 6.5135 -0.5002 4.6840 11 6 6.9969 -2.5571 4.3814 12 7 6.6316 -3.6090 3.6817 13 14 7.9969 -2.7760 5.9440 14 1 7.2460 -2.2136 7.0951 15 1 8.2460 -4.2219 6.1737 16 1 9.2941 -2.0666 5.8049 17 6 5.9451 -3.0769 1.2847 18 8 5.1656 -3.8882 0.8319 19 6 7.4282 -3.2754 1.1052 20 8 7.6624 -4.4809 0.3746 21 6 9.0447 -4.7646 0.1489 22 6 9.1756 -6.0707 -0.6370 23 1 8.5785 -6.0169 -1.5472 24 6 10.6536 -6.3215 -0.9941 25 6 10.9727 -7.6918 -0.3484 26 6 9.5606 -8.3079 -0.1795 27 8 8.7387 -7.1747 0.1734 28 1 -0.3633 0.4512 0.9233 29 1 -0.3635 0.5740 -0.8524 30 1 -0.3633 -1.0253 -0.0709 31 1 3.0690 1.3486 -0.1870 32 1 1.5026 1.9498 -0.7817 33 1 1.8051 1.8337 0.9687 34 1 1.4419 -1.7000 1.2340 35 1 1.8847 -0.1820 2.0513 36 1 4.0209 -0.1402 0.7548 37 1 3.5824 -1.7011 0.0205 38 1 3.5562 -2.7746 2.2224 39 1 3.8618 -1.2126 3.0193 40 1 6.0209 -0.0143 2.3697 41 1 7.3778 -1.0942 1.9684 42 1 6.8174 -4.5011 4.0142 43 1 7.8438 -2.4311 0.5552 44 1 7.9065 -3.3435 2.0822 45 1 9.4943 -3.9510 -0.4203 46 1 9.5561 -4.8642 1.1063 47 1 10.7819 -6.3701 -2.0754 48 1 11.2864 -5.5426 -0.5686 49 1 11.5862 -8.3011 -1.0122 50 1 11.4594 -7.5624 0.6183 51 1 9.2211 -8.7518 -1.1153 52 1 9.5579 -9.0480 0.6207 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609588884.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:01 Heat of formation + Delta-G solvation = -110.228695 kcal Electronic energy + Delta-G solvation = -29503.131442 eV Core-core repulsion = 25503.615449 eV Total energy + Delta-G solvation = -3999.515993 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.39314 -38.59394 -37.43456 -36.44662 -34.64286 -32.87058 -32.12284 -31.06361 -30.50725 -27.55744 -27.49918 -27.35738 -25.31766 -24.38818 -22.76887 -22.05348 -21.90903 -20.89374 -20.46683 -18.15359 -16.76889 -16.58263 -16.13464 -15.76650 -15.57893 -15.41877 -15.15580 -15.07177 -14.79648 -14.56205 -14.45574 -14.05103 -13.63087 -13.46534 -13.33321 -12.99228 -12.35836 -12.32645 -12.16975 -12.02001 -11.84400 -11.74153 -11.63391 -11.56038 -11.27021 -11.19139 -11.15159 -11.08619 -10.86133 -10.79939 -10.78194 -10.71729 -10.58407 -9.97521 -9.85970 -9.78894 -9.47410 -9.05720 -8.37814 -8.23553 -8.17151 -7.16395 -6.12463 -4.24698 3.20033 3.31117 3.31525 3.84109 3.99657 4.08584 4.27302 4.34462 4.52217 4.67346 4.83185 4.94250 5.04718 5.21037 5.23090 5.26257 5.39640 5.42390 5.49480 5.51623 5.56250 5.61876 5.67307 5.70435 5.72925 5.79298 5.87128 5.88549 5.92545 5.97944 5.98361 6.04664 6.11952 6.17288 6.26994 6.28743 6.48872 6.67539 6.81990 6.90077 6.95939 7.06159 7.08475 7.17512 7.20994 7.73213 7.82373 8.04405 8.11196 8.70606 9.06867 9.37194 9.82580 10.74674 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.009881 B = 0.003414 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2832.946834 B = 8200.460866 C =10310.449849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.549 5.549 3 C 0.024 3.976 4 C 0.060 3.940 5 C -0.128 4.128 6 C 0.140 3.860 7 N -0.578 5.578 8 C 0.228 3.772 9 C -0.569 4.569 10 H 0.064 0.936 11 C 0.083 3.917 12 N -0.843 5.843 13 Si 0.880 3.120 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.274 1.274 17 C 0.571 3.429 18 O -0.574 6.574 19 C 0.052 3.948 20 O -0.360 6.360 21 C 0.065 3.935 22 C 0.081 3.919 23 H 0.075 0.925 24 C -0.150 4.150 25 C -0.155 4.155 26 C 0.041 3.959 27 O -0.355 6.355 28 H 0.022 0.978 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.024 0.976 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.025 0.975 41 H 0.027 0.973 42 H 0.272 0.728 43 H 0.042 0.958 44 H 0.107 0.893 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.078 0.922 48 H 0.079 0.921 49 H 0.077 0.923 50 H 0.077 0.923 51 H 0.058 0.942 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.820 0.764 -8.292 8.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.273 5.273 3 C -0.124 4.124 4 C -0.069 4.069 5 C -0.167 4.167 6 C 0.015 3.985 7 N -0.309 5.309 8 C 0.108 3.892 9 C -0.606 4.606 10 H 0.082 0.918 11 C -0.124 4.124 12 N -0.477 5.477 13 Si 0.707 3.293 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.199 1.199 17 C 0.359 3.641 18 O -0.454 6.454 19 C -0.027 4.027 20 O -0.278 6.278 21 C -0.013 4.013 22 C 0.023 3.977 23 H 0.093 0.907 24 C -0.187 4.187 25 C -0.193 4.193 26 C -0.036 4.036 27 O -0.274 6.274 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.043 0.957 34 H 0.091 0.909 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.044 0.956 41 H 0.045 0.955 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.124 0.876 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.096 0.904 48 H 0.098 0.902 49 H 0.096 0.904 50 H 0.095 0.905 51 H 0.076 0.924 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.324 -0.182 -8.904 9.204 hybrid contribution 0.753 0.430 1.799 1.997 sum 3.076 0.248 -7.105 7.746 Atomic orbital electron populations 1.22372 0.87861 1.02110 0.99961 1.61963 1.07331 1.13811 1.44184 1.22411 1.01405 0.88798 0.99793 1.22117 0.96788 0.97520 0.90429 1.21985 0.93364 1.00701 1.00646 1.20846 0.82491 0.99793 0.95390 1.47955 1.05322 1.23950 1.53697 1.19405 0.88385 0.87584 0.93807 1.21305 1.49797 0.96419 0.93094 0.91780 1.25049 0.94668 0.95754 0.96940 1.69947 1.40441 0.98802 1.38542 0.86859 0.81590 0.77121 0.83762 1.20186 1.21194 1.19936 1.19174 0.88611 0.80323 0.75979 1.90527 1.58338 1.44104 1.52454 1.22797 0.96914 0.85324 0.97684 1.87986 1.21758 1.42282 1.75740 1.22584 0.85309 0.94486 0.98909 1.22734 0.93630 0.87127 0.94204 0.90716 1.22943 0.96155 0.98147 1.01489 1.23137 0.98222 0.96211 1.01723 1.23552 0.88927 0.90456 1.00618 1.89102 1.57651 1.18837 1.61824 0.95977 0.91771 0.91423 0.91022 0.91993 0.95721 0.90890 0.94771 0.92504 0.91264 0.91638 0.91630 0.95626 0.95454 0.91756 0.94025 0.87576 0.92900 0.93025 0.90359 0.90210 0.90386 0.90467 0.92404 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.53 60.06 0.57 0.86 16 2 N -0.55 -7.75 4.98 -251.25 -1.25 -9.00 16 3 C 0.02 0.30 9.35 60.07 0.56 0.86 16 4 C 0.06 0.92 4.97 -3.83 -0.02 0.90 16 5 C -0.13 -2.32 5.61 -26.73 -0.15 -2.47 16 6 C 0.14 2.99 5.37 -4.04 -0.02 2.97 16 7 N -0.58 -13.71 1.88 -175.06 -0.33 -14.04 16 8 C 0.23 5.24 5.74 -5.19 -0.03 5.21 16 9 C -0.57 -14.29 9.38 -34.44 -0.32 -14.62 16 10 H 0.06 1.61 7.96 -52.49 -0.42 1.19 16 11 C 0.08 2.13 4.98 -17.82 -0.09 2.04 16 12 N -0.84 -22.73 7.94 55.43 0.44 -22.29 16 13 Si 0.88 19.86 29.63 -169.99 -5.04 14.82 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 17 C 0.57 14.70 5.63 -10.98 -0.06 14.64 16 18 O -0.57 -16.58 16.13 -14.35 -0.23 -16.81 16 19 C 0.05 1.20 4.50 36.01 0.16 1.37 16 20 O -0.36 -8.31 9.87 -58.40 -0.58 -8.89 16 21 C 0.06 1.13 5.39 37.15 0.20 1.33 16 22 C 0.08 1.25 3.71 -26.15 -0.10 1.15 16 23 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 24 C -0.15 -1.62 6.64 -25.20 -0.17 -1.79 16 25 C -0.16 -1.56 7.15 -24.73 -0.18 -1.74 16 26 C 0.04 0.51 7.72 38.21 0.29 0.80 16 27 O -0.36 -6.33 11.18 -36.85 -0.41 -6.74 16 28 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 30 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 31 H 0.07 0.92 6.90 -51.93 -0.36 0.56 16 32 H 0.06 0.65 8.01 -51.92 -0.42 0.23 16 33 H 0.02 0.29 7.99 -51.93 -0.41 -0.12 16 34 H 0.07 1.12 7.97 -51.93 -0.41 0.71 16 35 H 0.03 0.51 7.95 -51.92 -0.41 0.09 16 36 H 0.06 1.00 6.77 -51.93 -0.35 0.65 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.07 1.54 7.53 -51.93 -0.39 1.15 16 39 H 0.07 1.37 8.05 -51.93 -0.42 0.95 16 40 H 0.03 0.54 8.13 -51.93 -0.42 0.11 16 41 H 0.03 0.61 6.16 -51.93 -0.32 0.29 16 42 H 0.27 7.36 8.32 -40.82 -0.34 7.02 16 43 H 0.04 0.86 7.44 -51.93 -0.39 0.47 16 44 H 0.11 2.63 5.60 -51.93 -0.29 2.34 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.08 0.80 7.70 -51.93 -0.40 0.40 16 49 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 50 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 51 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 52 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 408.61 15.07 6.16 6.16 Total: -1.00 -32.21 408.61 -10.20 -42.41 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -9.61 Total: 2.85 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: 0.66 Total: 11.53 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: -1.14 Total: -45.32 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -1.22 Total: -32.44 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.04 Total: 14.82 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.21 -10.20 -42.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609588884.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.821 kcal (2) G-P(sol) polarization free energy of solvation -32.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds