Wall clock time and date at job start Tue Mar 31 2020 04:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 113.99902 * 2 1 4 4 C 1.53000 * 109.47031 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47268 * 64.99647 * 4 3 2 6 6 C 1.46500 * 120.00123 * 270.00262 * 5 4 3 7 7 C 1.50700 * 109.47101 * 269.99899 * 6 5 4 8 8 H 1.08002 * 120.00255 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00213 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00595 * 179.97438 * 9 7 6 11 11 Si 1.86807 * 119.99649 * 359.97438 * 9 7 6 12 12 H 1.48492 * 109.47305 * 90.00427 * 11 9 7 13 13 H 1.48503 * 109.46768 * 210.00031 * 11 9 7 14 14 H 1.48504 * 109.47133 * 329.99882 * 11 9 7 15 15 C 1.34779 * 119.99712 * 90.00422 * 5 4 3 16 16 O 1.21282 * 119.99927 * 180.02562 * 15 5 4 17 17 C 1.50699 * 120.00033 * 359.97438 * 15 5 4 18 18 C 1.53006 * 109.46866 * 180.02562 * 17 15 5 19 19 C 1.52999 * 109.46623 * 179.97438 * 18 17 15 20 20 C 1.53006 * 109.46997 * 179.97438 * 19 18 17 21 21 N 1.46896 * 109.47501 * 180.02562 * 20 19 18 22 22 C 1.47015 * 110.99725 * 293.63826 * 21 20 19 23 23 C 1.53098 * 109.25860 * 177.60698 * 22 21 20 24 24 O 1.43020 * 109.26034 * 56.84125 * 23 22 21 25 25 C 1.43008 * 113.74114 * 301.33571 * 24 23 22 26 26 C 1.47010 * 111.00281 * 169.99700 * 21 20 19 27 27 H 1.09007 * 109.47456 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47086 * 300.00162 * 1 2 3 29 29 H 1.08997 * 109.47303 * 59.99886 * 1 2 3 30 30 H 1.08998 * 109.47338 * 59.99928 * 3 2 1 31 31 H 1.09008 * 109.47197 * 299.99774 * 3 2 1 32 32 H 1.09001 * 109.47335 * 305.00102 * 4 3 2 33 33 H 1.09003 * 109.47589 * 184.99929 * 4 3 2 34 34 H 1.08993 * 109.47349 * 29.99900 * 6 5 4 35 35 H 1.09005 * 109.47039 * 150.00075 * 6 5 4 36 36 H 0.97002 * 120.00302 * 179.97438 * 10 9 7 37 37 H 1.08993 * 109.47512 * 60.00410 * 17 15 5 38 38 H 1.09000 * 109.47247 * 300.00119 * 17 15 5 39 39 H 1.09000 * 109.47050 * 299.99952 * 18 17 15 40 40 H 1.09001 * 109.46801 * 60.00064 * 18 17 15 41 41 H 1.09000 * 109.47486 * 299.99829 * 19 18 17 42 42 H 1.09001 * 109.47362 * 60.00551 * 19 18 17 43 43 H 1.09000 * 109.46866 * 300.00212 * 20 19 18 44 44 H 1.08996 * 109.47261 * 59.99820 * 20 19 18 45 45 H 1.09003 * 109.50549 * 297.53447 * 22 21 20 46 46 H 1.08993 * 109.50989 * 57.66961 * 22 21 20 47 47 H 1.09000 * 109.50737 * 296.91027 * 23 22 21 48 48 H 1.08995 * 109.54643 * 176.80171 * 23 22 21 49 49 H 1.09005 * 109.50818 * 298.73237 * 25 24 23 50 50 H 1.08998 * 109.54892 * 178.62166 * 25 24 23 51 51 H 1.08997 * 109.50678 * 302.32649 * 26 21 20 52 52 H 1.09001 * 109.50582 * 62.41458 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5643 -1.2527 6 6 4.1051 -0.8922 -1.3427 7 6 5.5009 -1.2979 -0.9448 8 1 6.2198 -0.5461 -0.6544 9 6 5.8605 -2.6289 -0.9525 10 7 7.0787 -2.9830 -0.6058 11 14 4.6174 -3.9294 -1.4556 12 1 4.7019 -4.1545 -2.9209 13 1 4.9121 -5.1980 -0.7421 14 1 3.2500 -3.4695 -1.1034 15 6 4.2615 1.3336 -2.3218 16 8 4.6255 0.8201 -3.3585 17 6 4.1278 2.8318 -2.2293 18 6 4.5092 3.4616 -3.5706 19 6 4.3727 4.9826 -3.4769 20 6 4.7547 5.6125 -4.8180 21 7 4.6244 7.0729 -4.7279 22 6 3.2189 7.4664 -4.5518 23 6 3.1354 8.9879 -4.4030 24 8 3.7320 9.6071 -5.5458 25 6 5.1012 9.2464 -5.7470 26 6 5.2046 7.7275 -5.9094 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6885 1.8464 0.8899 31 1 1.6885 1.8464 -0.8901 32 1 3.8514 0.5682 0.8409 33 1 3.9786 2.1765 0.0889 34 1 3.3852 -1.3630 -0.6734 35 1 3.9119 -1.2115 -2.3668 36 1 7.3316 -3.9195 -0.6109 37 1 4.7897 3.2083 -1.4496 38 1 3.0970 3.0904 -1.9870 39 1 5.5399 3.2031 -3.8134 40 1 3.8468 3.0850 -4.3501 41 1 3.3419 5.2407 -3.2344 42 1 5.0348 5.3595 -2.6973 43 1 5.7857 5.3543 -5.0601 44 1 4.0931 5.2357 -5.5979 45 1 2.6416 7.1537 -5.4219 46 1 2.8170 6.9907 -3.6574 47 1 3.6678 9.2953 -3.5030 48 1 2.0908 9.2903 -4.3291 49 1 5.6909 9.5613 -4.8860 50 1 5.4789 9.7349 -6.6452 51 1 6.2522 7.4423 -6.0058 52 1 4.6596 7.4183 -6.8013 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610987865.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:07 Heat of formation + Delta-G solvation = -126.572969 kcal Electronic energy + Delta-G solvation = -28661.786855 eV Core-core repulsion = 24661.562121 eV Total energy + Delta-G solvation = -4000.224734 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.91180 -39.29716 -37.64219 -36.71827 -34.97507 -34.13199 -32.54318 -31.55654 -30.25325 -29.64815 -27.86037 -26.60249 -26.04070 -24.41192 -23.65069 -22.70101 -21.85047 -20.87022 -20.65967 -18.31794 -16.91071 -16.88888 -16.72817 -16.51303 -16.13645 -15.91674 -15.58934 -15.42022 -15.29600 -15.04378 -14.99879 -14.61104 -14.28805 -14.04228 -13.80920 -13.22041 -12.88120 -12.73010 -12.51939 -12.36388 -12.16663 -11.95837 -11.88000 -11.76054 -11.73385 -11.55565 -11.40343 -11.21909 -11.04950 -10.97191 -10.84500 -10.74597 -10.47218 -10.35822 -10.04649 -10.00743 -9.55640 -9.45556 -8.93352 -8.71985 -8.49869 -7.64211 -6.00753 -3.98083 3.36099 3.37125 3.38936 3.42384 3.46872 3.54265 3.85497 3.96109 4.48565 4.49224 4.59736 4.63446 4.78885 4.82943 4.92486 4.95732 4.99514 5.14961 5.16850 5.24827 5.26548 5.30592 5.33083 5.37607 5.39358 5.41082 5.42896 5.46576 5.47377 5.52831 5.57774 5.60632 5.71942 5.72921 5.77957 5.89298 5.91602 6.19090 6.29282 6.43516 6.62319 6.66411 6.77543 6.96850 7.09931 7.29670 7.43484 7.72835 8.34671 8.55676 9.00117 9.06049 9.60835 11.12755 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.015495 B = 0.002331 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.598378 B =12011.215285 C =13286.149122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.043 3.957 4 C 0.112 3.888 5 N -0.587 5.587 6 C 0.219 3.781 7 C -0.525 4.525 8 H 0.072 0.928 9 C 0.071 3.929 10 N -0.901 5.901 11 Si 0.874 3.126 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.262 1.262 15 C 0.503 3.497 16 O -0.542 6.542 17 C -0.139 4.139 18 C -0.102 4.102 19 C -0.114 4.114 20 C 0.055 3.945 21 N -0.538 5.538 22 C 0.014 3.986 23 C 0.063 3.937 24 O -0.388 6.388 25 C 0.064 3.936 26 C 0.016 3.984 27 H 0.083 0.917 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.042 0.958 35 H 0.031 0.969 36 H 0.263 0.737 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.036 0.964 45 H 0.042 0.958 46 H 0.090 0.910 47 H 0.060 0.940 48 H 0.097 0.903 49 H 0.060 0.940 50 H 0.097 0.903 51 H 0.087 0.913 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.364 23.098 -3.514 25.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.294 6.294 3 C -0.035 4.035 4 C -0.013 4.013 5 N -0.318 5.318 6 C 0.098 3.902 7 C -0.564 4.564 8 H 0.090 0.910 9 C -0.131 4.131 10 N -0.540 5.540 11 Si 0.701 3.299 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.187 1.187 15 C 0.290 3.710 16 O -0.419 6.419 17 C -0.179 4.179 18 C -0.141 4.141 19 C -0.152 4.152 20 C -0.073 4.073 21 N -0.263 5.263 22 C -0.114 4.114 23 C -0.014 4.014 24 O -0.307 6.307 25 C -0.013 4.013 26 C -0.112 4.112 27 H 0.101 0.899 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.054 0.946 45 H 0.060 0.940 46 H 0.108 0.892 47 H 0.078 0.922 48 H 0.115 0.885 49 H 0.078 0.922 50 H 0.115 0.885 51 H 0.105 0.895 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.776 22.756 -3.750 25.456 hybrid contribution -1.049 -1.092 -0.636 1.642 sum -11.825 21.664 -4.386 25.068 Atomic orbital electron populations 1.22706 0.81972 1.02551 0.99290 1.88067 1.18812 1.27290 1.95182 1.23148 0.95388 0.85266 0.99660 1.21532 0.90979 0.99362 0.89385 1.47861 1.64743 1.08897 1.10265 1.19661 0.97586 0.75181 0.97743 1.21373 0.96175 0.93491 1.45315 0.90958 1.24834 0.95155 0.98367 0.94704 1.69902 1.18178 1.17172 1.48764 0.86867 0.82541 0.81324 0.79165 1.20121 1.21234 1.18659 1.20441 0.77913 0.88741 0.83861 1.90661 1.46549 1.75168 1.29539 1.21712 1.02776 0.93593 0.99812 1.21276 1.03266 0.93011 0.96525 1.21610 1.01563 0.94980 0.97016 1.22178 1.01836 0.85632 0.97628 1.62234 1.16673 1.08459 1.38929 1.22848 0.89465 0.96974 1.02149 1.22679 0.98768 0.91094 0.88837 1.87977 1.25675 1.69333 1.47681 1.22665 0.83227 0.93446 1.01983 1.22790 1.01008 0.95551 0.91868 0.89880 0.94476 0.94549 0.92851 0.93649 0.88839 0.89649 0.94041 0.95108 0.92718 0.89332 0.90018 0.90907 0.91507 0.92183 0.90982 0.90303 0.94562 0.94001 0.89164 0.92201 0.88525 0.92192 0.88503 0.89466 0.93974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.38 -6.01 9.53 -35.23 -0.34 -6.35 16 3 C 0.04 0.57 6.28 37.16 0.23 0.80 16 4 C 0.11 1.74 5.62 -4.04 -0.02 1.71 16 5 N -0.59 -12.14 2.42 -175.06 -0.42 -12.57 16 6 C 0.22 5.55 4.05 -5.19 -0.02 5.53 16 7 C -0.52 -15.45 9.94 -34.44 -0.34 -15.79 16 8 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 9 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 10 N -0.90 -28.38 13.96 55.43 0.77 -27.60 16 11 Si 0.87 22.36 27.47 -169.99 -4.67 17.69 16 12 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 15 C 0.50 10.12 7.67 -10.99 -0.08 10.03 16 16 O -0.54 -13.37 15.56 5.56 0.09 -13.28 16 17 C -0.14 -1.88 4.25 -27.88 -0.12 -2.00 16 18 C -0.10 -1.31 4.50 -26.73 -0.12 -1.43 16 19 C -0.11 -1.10 5.15 -26.73 -0.14 -1.24 16 20 C 0.05 0.52 4.96 -3.82 -0.02 0.51 16 21 N -0.54 -4.91 4.73 -234.31 -1.11 -6.01 16 22 C 0.01 0.11 5.44 -3.71 -0.02 0.09 16 23 C 0.06 0.48 7.01 37.21 0.26 0.74 16 24 O -0.39 -3.69 10.83 -35.23 -0.38 -4.07 16 25 C 0.06 0.49 7.01 37.21 0.26 0.75 16 26 C 0.02 0.13 5.65 -3.71 -0.02 0.11 16 27 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.55 7.30 -51.92 -0.38 0.17 16 32 H 0.09 1.58 8.07 -51.93 -0.42 1.16 16 33 H 0.09 1.03 6.44 -51.93 -0.33 0.69 16 34 H 0.04 1.05 6.17 -51.93 -0.32 0.72 16 35 H 0.03 0.85 6.85 -51.93 -0.36 0.49 16 36 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 37 H 0.09 1.07 7.40 -51.93 -0.38 0.68 16 38 H 0.08 0.90 7.26 -51.93 -0.38 0.53 16 39 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 40 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 41 H 0.06 0.52 6.52 -51.93 -0.34 0.19 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.77 8.04 -51.93 -0.42 0.35 16 44 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16 45 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.09 0.66 6.38 -51.93 -0.33 0.33 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 51 H 0.09 0.63 8.09 -51.93 -0.42 0.21 16 52 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 408.00 15.07 6.15 6.15 Total: -1.00 -36.66 408.00 -8.63 -45.29 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -9.58 Total: -2.58 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 0.86 Total: 3.33 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.76 Total: -46.18 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.63 Total: -23.70 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.67 Total: 17.69 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.66 -8.63 -45.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610987865.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.286 kcal (2) G-P(sol) polarization free energy of solvation -36.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds