Wall clock time and date at job start Tue Mar 31 2020 05:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 117.00192 * 2 1 4 4 O 1.20823 * 120.00014 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99865 * 179.97438 * 3 2 1 6 6 N 1.46494 * 109.46925 * 180.02562 * 5 3 2 7 7 C 1.36947 * 119.99919 * 276.18270 * 6 5 3 8 8 H 1.07991 * 120.00162 * 146.59889 * 7 6 5 9 9 C 1.38810 * 119.99444 * 326.59483 * 7 6 5 10 10 N 1.31620 * 120.00126 * 336.20204 * 9 7 6 11 11 Si 1.86800 * 119.99603 * 156.20750 * 9 7 6 12 12 H 1.48504 * 109.47423 * 89.99945 * 11 9 7 13 13 H 1.48505 * 109.47017 * 209.99625 * 11 9 7 14 14 H 1.48497 * 109.47294 * 329.99662 * 11 9 7 15 15 S 1.65597 * 120.00511 * 96.18000 * 6 5 3 16 16 O 1.42102 * 106.40738 * 156.45773 * 15 6 5 17 17 O 1.42106 * 106.40014 * 23.54077 * 15 6 5 18 18 C 1.76196 * 107.22104 * 270.00132 * 15 6 5 19 19 C 1.38287 * 119.96974 * 269.97793 * 18 15 6 20 20 C 1.38252 * 120.10976 * 180.02562 * 19 18 15 21 21 C 1.38165 * 120.05583 * 359.67950 * 20 19 18 22 22 C 1.38719 * 119.94237 * 0.61298 * 21 20 19 23 23 O 1.35896 * 120.05460 * 179.68410 * 22 21 20 24 24 C 1.42900 * 117.00204 * 359.72122 * 23 22 21 25 25 C 1.38126 * 119.97238 * 89.99477 * 18 15 6 26 26 H 1.08996 * 109.46784 * 59.99803 * 1 2 3 27 27 H 1.08995 * 109.47233 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46986 * 300.00368 * 1 2 3 29 29 H 1.09002 * 109.46767 * 59.99971 * 5 3 2 30 30 H 1.08997 * 109.46884 * 299.99595 * 5 3 2 31 31 H 0.97006 * 119.99989 * 180.02562 * 10 9 7 32 32 H 1.07996 * 119.94764 * 359.97438 * 19 18 15 33 33 H 1.07994 * 119.96937 * 179.97438 * 20 19 18 34 34 H 1.07996 * 120.02841 * 180.29883 * 21 20 19 35 35 H 1.08997 * 109.47754 * 300.01072 * 24 23 22 36 36 H 1.09005 * 109.46456 * 60.00606 * 24 23 22 37 37 H 1.08998 * 109.47525 * 180.02562 * 24 23 22 38 38 H 1.07997 * 120.02670 * 0.02562 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6796 0.0011 7 6 4.0539 3.3727 -1.1778 8 1 3.8234 4.4275 -1.1990 9 6 4.4234 2.7193 -2.3455 10 7 5.1368 1.6149 -2.2841 11 14 3.9084 3.4077 -4.0039 12 1 4.9486 4.3471 -4.4946 13 1 3.7493 2.2947 -4.9740 14 1 2.6179 4.1285 -3.8615 15 16 4.3642 3.4296 1.4271 16 8 5.2185 4.5149 1.0933 17 8 4.7333 2.4007 2.3352 18 6 2.8800 4.1402 2.0570 19 6 2.5309 5.4322 1.7091 20 6 1.3673 5.9929 2.2021 21 6 0.5468 5.2608 3.0387 22 6 0.8979 3.9666 3.3940 23 8 0.0959 3.2468 4.2219 24 6 -1.0911 3.8874 4.6940 25 6 2.0665 3.4064 2.8982 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 3.9564 0.7804 -0.8892 30 1 3.9557 0.7809 0.8908 31 1 5.3953 1.1585 -3.1001 32 1 3.1686 6.0046 1.0519 33 1 1.0970 7.0022 1.9293 34 1 -0.3645 5.6975 3.4197 35 1 -0.8226 4.7839 5.2528 36 1 -1.7175 4.1623 3.8453 37 1 -1.6385 3.2048 5.3440 38 1 2.3400 2.3976 3.1701 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612621592.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:45 Heat of formation + Delta-G solvation = -144.943548 kcal Electronic energy + Delta-G solvation = -27526.989327 eV Core-core repulsion = 23463.502910 eV Total energy + Delta-G solvation = -4063.486417 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.95302 -39.62011 -37.23592 -36.32842 -36.17983 -35.02582 -34.84032 -31.49159 -31.09755 -30.04496 -28.45217 -27.32608 -26.37471 -24.04013 -22.83544 -22.22406 -20.51214 -18.97651 -18.32785 -17.18618 -16.89079 -16.75928 -16.20523 -15.87088 -15.74114 -15.68666 -15.63871 -15.32199 -14.70946 -14.43732 -13.72881 -13.53584 -13.28344 -13.00942 -12.87611 -12.71757 -12.44865 -11.91514 -11.77801 -11.60299 -11.43817 -11.26421 -11.18273 -11.17014 -11.02622 -10.96973 -10.80575 -10.61853 -10.32347 -10.22655 -10.20475 -9.74531 -9.26315 -9.02231 -8.09785 -7.91079 -6.36928 -4.05183 1.04242 1.41329 1.61289 3.06174 3.17249 3.26055 3.27631 3.33844 3.35221 3.71363 4.12869 4.38392 4.62808 4.80084 4.94805 4.98917 5.01781 5.03650 5.22550 5.32202 5.43884 5.45145 5.51660 5.58153 5.61083 5.74344 5.89512 6.02984 6.09369 6.31571 6.43795 6.49025 6.65182 6.76979 6.97305 7.16876 7.44959 7.56599 8.26212 8.61005 8.85859 9.25409 10.67455 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.012637 B = 0.005911 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.164488 B = 4736.151790 C = 5484.927064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.369 6.369 3 C 0.433 3.567 4 O -0.494 6.494 5 C 0.119 3.881 6 N -0.822 5.822 7 C -0.289 4.289 8 H 0.095 0.905 9 C 0.039 3.961 10 N -0.864 5.864 11 Si 0.915 3.085 12 H -0.275 1.275 13 H -0.282 1.282 14 H -0.270 1.270 15 S 2.656 3.344 16 O -0.955 6.955 17 O -0.988 6.988 18 C -0.611 4.611 19 C -0.049 4.049 20 C -0.105 4.105 21 C -0.165 4.165 22 C 0.101 3.899 23 O -0.318 6.318 24 C 0.028 3.972 25 C -0.045 4.045 26 H 0.056 0.944 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.158 0.842 30 H 0.107 0.893 31 H 0.271 0.729 32 H 0.141 0.859 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.098 0.902 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.226 1.339 7.556 13.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.273 3.727 4 O -0.380 6.380 5 C -0.010 4.010 6 N -0.651 5.651 7 C -0.422 4.422 8 H 0.113 0.887 9 C -0.167 4.167 10 N -0.503 5.503 11 Si 0.741 3.259 12 H -0.200 1.200 13 H -0.207 1.207 14 H -0.194 1.194 15 S 2.750 3.250 16 O -0.945 6.945 17 O -0.978 6.978 18 C -0.694 4.694 19 C -0.068 4.068 20 C -0.124 4.124 21 C -0.184 4.184 22 C 0.056 3.944 23 O -0.232 6.232 24 C -0.067 4.067 25 C -0.065 4.065 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.175 0.825 30 H 0.125 0.875 31 H 0.081 0.919 32 H 0.158 0.842 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.545 1.420 8.009 13.318 hybrid contribution -1.690 0.742 -0.885 2.047 sum -12.235 2.162 7.124 14.322 Atomic orbital electron populations 1.23066 0.78373 1.02500 1.01871 1.86566 1.21979 1.35061 1.84944 1.25645 0.93857 0.80999 0.72172 1.90603 1.66852 1.36072 1.44474 1.21125 0.84422 0.86791 1.08705 1.52338 1.76913 1.16907 1.18980 1.19030 1.44285 0.95218 0.83693 0.88701 1.25265 0.94674 0.97076 0.99680 1.69863 1.32008 1.19213 1.29249 0.86123 0.79518 0.78731 0.81531 1.20030 1.20729 1.19414 1.03692 0.73827 0.73972 0.73529 1.93485 1.62032 1.55654 1.83377 1.93456 1.81536 1.57260 1.65550 1.31292 1.23733 1.05047 1.09340 1.20820 0.96095 0.93160 0.96718 1.20991 0.94450 0.99783 0.97162 1.21348 1.01153 0.94171 1.01688 1.18958 0.91661 0.90951 0.92855 1.86073 1.34084 1.41654 1.61353 1.23016 0.85628 0.98954 0.99114 1.19999 0.91403 0.99773 0.95307 0.92553 0.89065 0.92647 0.82524 0.87538 0.91898 0.84168 0.85325 0.85470 0.92863 0.92806 0.88367 0.84426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.59 16 2 O -0.37 -6.81 10.57 -39.25 -0.41 -7.23 16 3 C 0.43 9.20 7.99 36.01 0.29 9.49 16 4 O -0.49 -11.27 15.80 -18.75 -0.30 -11.56 16 5 C 0.12 2.67 5.89 -5.19 -0.03 2.64 16 6 N -0.82 -19.89 2.39 -61.09 -0.15 -20.03 16 7 C -0.29 -7.43 8.71 -15.06 -0.13 -7.56 16 8 H 0.10 2.39 7.93 -52.49 -0.42 1.98 16 9 C 0.04 0.99 4.99 -17.43 -0.09 0.90 16 10 N -0.86 -22.19 11.26 55.49 0.62 -21.56 16 11 Si 0.91 20.03 29.62 -169.99 -5.03 15.00 16 12 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 13 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 14 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 15 S 2.66 61.17 5.65 -107.50 -0.61 60.57 16 16 O -0.96 -23.89 16.49 -57.17 -0.94 -24.84 16 17 O -0.99 -23.32 15.82 -57.17 -0.90 -24.22 16 18 C -0.61 -12.40 5.79 -39.60 -0.23 -12.63 16 19 C -0.05 -0.89 9.52 -39.56 -0.38 -1.27 16 20 C -0.11 -1.61 10.04 -39.60 -0.40 -2.00 16 21 C -0.16 -2.42 9.04 -39.43 -0.36 -2.77 16 22 C 0.10 1.70 6.69 -39.21 -0.26 1.44 16 23 O -0.32 -4.74 10.50 -19.41 -0.20 -4.94 16 24 C 0.03 0.27 9.81 101.05 0.99 1.26 16 25 C -0.05 -0.86 9.39 -39.43 -0.37 -1.24 16 26 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 27 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 29 H 0.16 3.70 5.31 -51.93 -0.28 3.42 16 30 H 0.11 2.19 6.89 -51.93 -0.36 1.84 16 31 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 32 H 0.14 2.48 7.61 -52.49 -0.40 2.08 16 33 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.13 1.41 6.30 -52.49 -0.33 1.08 16 35 H 0.05 0.44 7.67 -51.93 -0.40 0.04 16 36 H 0.05 0.48 7.65 -51.93 -0.40 0.08 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.14 2.60 7.61 -52.49 -0.40 2.20 16 LS Contribution 343.73 15.07 5.18 5.18 Total: -1.00 -32.06 343.73 -6.86 -38.92 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -4.22 Total: 4.87 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 0.10 Total: -10.15 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.48 Total: -41.60 kcal Atomic # 8 Polarization: -70.03 SS G_CDS: -2.76 Total: -72.79 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.00 kcal Atomic # 16 Polarization: 61.17 SS G_CDS: -0.61 Total: 60.57 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.06 -6.86 -38.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612621592.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.020 kcal (2) G-P(sol) polarization free energy of solvation -32.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds