Wall clock time and date at job start Tue Mar 31 2020 04:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46896 * 109.46963 * 2 1 4 4 C 1.46894 * 111.00357 * 73.43878 * 3 2 1 5 5 C 1.52999 * 109.47448 * 200.61152 * 4 3 2 6 6 O 1.42898 * 109.47029 * 63.76911 * 5 4 3 7 7 C 1.46902 * 110.99744 * 197.39244 * 3 2 1 8 8 C 1.53003 * 109.47219 * 66.04625 * 7 3 2 9 9 N 1.46497 * 109.47071 * 179.97438 * 8 7 3 10 10 C 1.34776 * 119.99755 * 179.97438 * 9 8 7 11 11 O 1.21590 * 120.00174 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00039 * 180.02562 * 10 9 8 13 13 C 1.46502 * 120.00277 * 180.02562 * 12 10 9 14 14 C 1.53079 * 109.43859 * 84.79611 * 13 12 10 15 15 C 1.53195 * 109.29150 * 181.23899 * 14 13 12 16 16 N 1.46922 * 108.89159 * 305.57537 * 15 14 13 17 17 C 1.36936 * 120.63180 * 233.51613 * 16 15 14 18 18 H 1.07998 * 120.00129 * 145.64464 * 17 16 15 19 19 C 1.38813 * 119.99882 * 325.64888 * 17 16 15 20 20 N 1.31614 * 119.99824 * 348.28724 * 19 17 16 21 21 Si 1.86806 * 119.99933 * 168.29593 * 19 17 16 22 22 H 1.48494 * 109.46827 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47248 * 119.99412 * 21 19 17 24 24 H 1.48498 * 109.46602 * 239.99713 * 21 19 17 25 25 C 1.46929 * 118.74008 * 53.54083 * 16 15 14 26 26 C 1.53034 * 109.45902 * 204.99994 * 13 12 10 27 27 H 1.08994 * 109.47593 * 173.75261 * 1 2 3 28 28 H 1.09004 * 109.46819 * 293.75308 * 1 2 3 29 29 H 1.08997 * 109.47103 * 53.74871 * 1 2 3 30 30 H 1.08997 * 109.46806 * 240.00305 * 2 1 3 31 31 H 1.08997 * 109.46782 * 119.99963 * 2 1 3 32 32 H 1.08997 * 109.47028 * 320.61136 * 4 3 2 33 33 H 1.09004 * 109.46986 * 80.61003 * 4 3 2 34 34 H 1.09003 * 109.47039 * 183.76824 * 5 4 3 35 35 H 1.08996 * 109.46983 * 303.76446 * 5 4 3 36 36 H 0.96705 * 114.00006 * 184.97780 * 6 5 4 37 37 H 1.08993 * 109.47098 * 306.04747 * 7 3 2 38 38 H 1.09002 * 109.47144 * 186.04274 * 7 3 2 39 39 H 1.09005 * 109.46594 * 59.99935 * 8 7 3 40 40 H 1.08995 * 109.47006 * 300.00143 * 8 7 3 41 41 H 0.97001 * 120.00106 * 0.02562 * 9 8 7 42 42 H 0.97000 * 119.99898 * 359.97438 * 12 10 9 43 43 H 1.09003 * 109.45630 * 324.97725 * 13 12 10 44 44 H 1.09000 * 109.39274 * 61.36133 * 14 13 12 45 45 H 1.09004 * 109.61893 * 301.25482 * 14 13 12 46 46 H 1.08997 * 109.58542 * 185.71900 * 15 14 13 47 47 H 1.08998 * 109.58812 * 65.43751 * 15 14 13 48 48 H 0.97002 * 119.99549 * 180.02562 * 20 19 17 49 49 H 1.09000 * 109.58343 * 66.17312 * 25 16 15 50 50 H 1.08997 * 109.58599 * 186.46164 * 25 16 15 51 51 H 1.09001 * 109.50022 * 58.67980 * 26 13 12 52 52 H 1.09001 * 109.52685 * 298.58868 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8266 2.0117 1.3145 5 6 1.8508 3.5339 1.1623 6 8 0.7491 3.9492 0.3526 7 6 3.4290 1.4450 -0.4100 8 6 3.5534 1.0150 -1.8730 9 7 4.9588 1.0755 -2.2820 10 6 5.3101 0.7378 -3.5386 11 8 4.4605 0.3834 -4.3329 12 7 6.6031 0.7929 -3.9148 13 6 6.9849 0.4264 -5.2808 14 6 6.8131 1.6382 -6.2003 15 6 7.1836 1.2428 -7.6332 16 7 8.5360 0.6685 -7.6337 17 6 9.5026 1.1603 -8.4696 18 1 10.5334 1.1838 -8.1484 19 6 9.1575 1.6288 -9.7299 20 7 7.9561 1.3936 -10.2132 21 14 10.3984 2.5927 -10.7402 22 1 11.6658 2.7202 -9.9769 23 1 10.6583 1.8798 -12.0166 24 1 9.8572 3.9450 -11.0297 25 6 8.8314 -0.4440 -6.7205 26 6 8.4458 -0.0292 -5.2970 27 1 -0.3634 -1.0215 -0.1118 28 1 -0.3633 0.4140 0.9407 29 1 -0.3633 0.6077 -0.8287 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.8659 1.7030 1.7265 33 1 2.6268 1.7008 1.9862 34 1 1.7747 3.9985 2.1454 35 1 2.7846 3.8368 0.6886 36 1 0.7440 4.8949 0.1504 37 1 4.0185 0.7759 0.2167 38 1 3.7966 2.4651 -0.2986 39 1 2.9638 1.6842 -2.4997 40 1 3.1858 -0.0050 -1.9844 41 1 5.6367 1.3578 -1.6482 42 1 7.2809 1.0760 -3.2812 43 1 6.3473 -0.3856 -5.6306 44 1 7.4669 2.4430 -5.8644 45 1 5.7768 1.9749 -6.1722 46 1 7.1611 2.1249 -8.2731 47 1 6.4728 0.5042 -8.0039 48 1 7.7151 1.7207 -11.0940 49 1 8.2545 -1.3209 -7.0144 50 1 9.8955 -0.6765 -6.7600 51 1 8.5697 -0.8780 -4.6246 52 1 9.0866 0.7901 -4.9708 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613616279.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:44 Heat of formation + Delta-G solvation = -55.448867 kcal Electronic energy + Delta-G solvation = -28485.725230 eV Core-core repulsion = 24520.877420 eV Total energy + Delta-G solvation = -3964.847810 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.226 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.95692 -38.86012 -37.44122 -36.59007 -34.74310 -34.24145 -32.13041 -31.52124 -30.47008 -29.88008 -29.19825 -27.06510 -24.88997 -23.34053 -23.01373 -22.17281 -21.83096 -20.87517 -20.43187 -19.38733 -18.10946 -17.69712 -16.84847 -16.55042 -16.24038 -15.65817 -15.56005 -14.92624 -14.78339 -14.39921 -14.27773 -14.07915 -13.78426 -13.67018 -13.55495 -13.45665 -13.06092 -12.94496 -12.61243 -12.34613 -12.25334 -12.19185 -11.80462 -11.72430 -11.42635 -11.21838 -11.06919 -10.98085 -10.86620 -10.74538 -10.33116 -10.29493 -10.16707 -10.08527 -9.92495 -9.73706 -9.50419 -9.08494 -8.70303 -8.55412 -8.36643 -6.55011 -5.75505 -3.26005 2.72598 3.38347 3.45478 3.45686 3.47852 3.53742 3.91232 4.41756 4.47380 4.50941 4.65002 4.68765 4.75701 4.88835 4.93082 5.12809 5.15378 5.17964 5.27198 5.31822 5.36199 5.45104 5.50636 5.57290 5.67786 5.70953 5.75137 5.81835 5.89374 6.02155 6.14830 6.29687 6.42388 6.44819 6.51167 6.64764 6.65936 6.70563 6.71738 6.82945 6.96587 7.01325 7.16594 7.35606 7.42994 7.72757 7.83392 8.20651 8.52710 8.83548 9.25631 9.86441 10.47224 11.32791 Molecular weight = 328.23amu Principal moments of inertia in cm(-1) A = 0.023778 B = 0.001920 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.259528 B =14577.335545 C =14901.149994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.044 3.956 3 N -0.524 5.524 4 C 0.053 3.947 5 C 0.082 3.918 6 O -0.558 6.558 7 C 0.043 3.957 8 C 0.143 3.857 9 N -0.753 5.753 10 C 0.702 3.298 11 O -0.586 6.586 12 N -0.740 5.740 13 C 0.169 3.831 14 C -0.147 4.147 15 C 0.177 3.823 16 N -0.592 5.592 17 C -0.257 4.257 18 H 0.063 0.937 19 C 0.007 3.993 20 N -0.899 5.899 21 Si 0.903 3.097 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.289 1.289 25 C 0.149 3.851 26 C -0.138 4.138 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.033 0.967 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.046 0.954 35 H 0.044 0.956 36 H 0.375 0.625 37 H 0.038 0.962 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.391 0.609 42 H 0.389 0.611 43 H 0.081 0.919 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.081 0.919 47 H 0.022 0.978 48 H 0.254 0.746 49 H 0.020 0.980 50 H 0.058 0.942 51 H 0.054 0.946 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.999 1.544 27.189 29.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.083 4.083 3 N -0.249 5.249 4 C -0.075 4.075 5 C 0.003 3.997 6 O -0.362 6.362 7 C -0.085 4.085 8 C 0.018 3.982 9 N -0.410 5.410 10 C 0.402 3.598 11 O -0.464 6.464 12 N -0.394 5.394 13 C 0.065 3.935 14 C -0.187 4.187 15 C 0.051 3.949 16 N -0.315 5.315 17 C -0.387 4.387 18 H 0.081 0.919 19 C -0.192 4.192 20 N -0.543 5.543 21 Si 0.732 3.268 22 H -0.202 1.202 23 H -0.216 1.216 24 H -0.216 1.216 25 C 0.021 3.979 26 C -0.178 4.178 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.051 0.949 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.221 0.779 37 H 0.056 0.944 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.224 0.776 42 H 0.222 0.778 43 H 0.099 0.901 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.100 0.900 47 H 0.040 0.960 48 H 0.064 0.936 49 H 0.038 0.962 50 H 0.076 0.924 51 H 0.073 0.927 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.291 0.857 25.945 28.308 hybrid contribution 1.882 1.005 0.711 2.249 sum -9.409 1.863 26.655 28.329 Atomic orbital electron populations 1.21754 0.94487 1.01511 1.02523 1.22226 0.96675 0.88307 1.01140 1.61824 1.17422 1.17890 1.27770 1.22200 1.01966 0.93609 0.89771 1.22152 0.89501 0.94488 0.93515 1.86588 1.47598 1.29209 1.72836 1.22283 0.89138 1.01558 0.95519 1.21058 0.81284 1.01996 0.93825 1.45035 1.09236 1.74454 1.12316 1.15964 0.83431 0.78600 0.81836 1.90944 1.49524 1.54016 1.51886 1.45522 1.06103 1.72617 1.15136 1.20898 0.95683 0.98008 0.78885 1.22587 1.00118 0.96900 0.99124 1.20687 0.85370 0.98476 0.90415 1.44030 1.09392 1.34669 1.43372 1.19152 0.89544 1.36570 0.93446 0.91948 1.25262 0.96824 1.00907 0.96250 1.70009 1.19587 1.47271 1.17409 0.86226 0.80853 0.79574 0.80104 1.20225 1.21631 1.21569 1.20856 0.98563 0.90807 0.87644 1.22336 0.94753 1.00281 1.00423 0.92390 0.93059 0.91336 0.90083 0.94880 0.89709 0.93246 0.93638 0.93737 0.77907 0.94371 0.90246 0.90689 0.91704 0.77582 0.77829 0.90112 0.92900 0.92794 0.90024 0.95990 0.93593 0.96201 0.92366 0.92736 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.90 37.16 0.37 -0.74 16 2 C 0.04 0.35 5.55 -3.82 -0.02 0.32 16 3 N -0.52 -4.32 4.31 -234.63 -1.01 -5.33 16 4 C 0.05 0.35 5.21 -3.83 -0.02 0.33 16 5 C 0.08 0.51 7.24 37.16 0.27 0.78 16 6 O -0.56 -4.52 13.59 -35.23 -0.48 -4.99 16 7 C 0.04 0.33 4.89 -3.82 -0.02 0.31 16 8 C 0.14 1.53 5.64 -4.04 -0.02 1.51 16 9 N -0.75 -8.31 5.56 -65.22 -0.36 -8.68 16 10 C 0.70 11.00 8.53 -86.92 -0.74 10.26 16 11 O -0.59 -12.05 16.01 5.29 0.08 -11.96 16 12 N -0.74 -10.69 5.08 -58.61 -0.30 -10.99 16 13 C 0.17 3.04 2.41 -67.87 -0.16 2.87 16 14 C -0.15 -3.02 5.66 -26.59 -0.15 -3.17 16 15 C 0.18 4.40 5.23 -3.71 -0.02 4.38 16 16 N -0.59 -15.00 2.97 -172.32 -0.51 -15.51 16 17 C -0.26 -7.09 9.54 -15.06 -0.14 -7.23 16 18 H 0.06 1.68 7.86 -52.49 -0.41 1.27 16 19 C 0.01 0.20 5.00 -17.43 -0.09 0.11 16 20 N -0.90 -26.62 11.35 55.49 0.63 -25.99 16 21 Si 0.90 21.79 29.57 -169.99 -5.03 16.76 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 C 0.15 3.11 6.52 -3.71 -0.02 3.09 16 26 C -0.14 -2.33 5.55 -26.61 -0.15 -2.47 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.37 6.81 -51.93 -0.35 0.01 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.70 5.91 -51.93 -0.31 0.39 16 31 H 0.03 0.23 8.03 -51.93 -0.42 -0.19 16 32 H 0.08 0.59 6.42 -51.93 -0.33 0.25 16 33 H 0.05 0.26 7.99 -51.93 -0.41 -0.15 16 34 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 35 H 0.04 0.26 6.74 -51.93 -0.35 -0.09 16 36 H 0.37 1.54 9.12 45.56 0.42 1.96 16 37 H 0.04 0.26 8.12 -51.93 -0.42 -0.17 16 38 H 0.08 0.55 6.64 -51.93 -0.34 0.21 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.06 0.76 6.27 -51.93 -0.33 0.44 16 41 H 0.39 3.02 8.49 -40.82 -0.35 2.67 16 42 H 0.39 4.32 8.62 -40.82 -0.35 3.97 16 43 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 44 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.08 2.25 6.39 -51.93 -0.33 1.92 16 47 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 51 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 52 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 405.25 15.07 6.11 6.11 Total: -1.00 -34.90 405.25 -10.25 -45.16 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -8.46 Total: 5.08 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: -0.92 Total: 10.35 kcal Atomic # 7 Polarization: -64.94 SS G_CDS: -1.55 Total: -66.50 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.39 Total: -16.96 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.90 -10.25 -45.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613616279.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.294 kcal (2) G-P(sol) polarization free energy of solvation -34.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds