Wall clock time and date at job start Tue Mar 31 2020 05:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86798 * 119.99905 * 2 1 4 4 H 1.48498 * 109.47148 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.46977 * 299.99676 * 3 2 1 6 6 H 1.48501 * 109.47487 * 59.99605 * 3 2 1 7 7 C 1.39942 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99658 * 197.86327 * 7 2 1 9 9 C 1.41397 * 120.00058 * 17.87057 * 7 2 1 10 10 C 1.40730 * 120.24580 * 24.37725 * 9 7 2 11 11 C 1.37591 * 119.74738 * 179.97438 * 10 9 7 12 12 C 1.38667 * 120.24689 * 0.27182 * 11 10 9 13 13 C 1.38610 * 120.49841 * 359.45068 * 12 11 10 14 14 S 1.76205 * 119.87472 * 180.30143 * 13 12 11 15 15 O 1.42098 * 106.40000 * 23.78848 * 14 13 12 16 16 O 1.42105 * 106.39936 * 156.70779 * 14 13 12 17 17 N 1.65597 * 107.21413 * 270.24880 * 14 13 12 18 18 C 1.46498 * 120.00030 * 65.00458 * 17 14 13 19 19 C 1.52997 * 109.47301 * 164.99898 * 18 17 14 20 20 O 1.42902 * 109.47510 * 64.99420 * 19 18 17 21 21 C 1.42898 * 114.00269 * 180.02562 * 20 19 18 22 22 C 1.50699 * 109.47200 * 180.02562 * 21 20 19 23 23 O 1.20828 * 119.99956 * 359.97438 * 22 21 20 24 24 O 1.34231 * 120.00109 * 179.97438 * 22 21 20 25 25 C 1.37644 * 120.24825 * 0.54947 * 13 12 11 26 26 H 0.96999 * 120.00195 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.12359 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.88212 * 179.97438 * 11 10 9 29 29 H 1.07999 * 119.74866 * 179.72447 * 12 11 10 30 30 H 0.96995 * 119.99708 * 244.99759 * 17 14 13 31 31 H 1.09000 * 109.47000 * 284.99274 * 18 17 14 32 32 H 1.08998 * 109.47629 * 44.99283 * 18 17 14 33 33 H 1.08996 * 109.47340 * 184.99839 * 19 18 17 34 34 H 1.09001 * 109.47014 * 304.99592 * 19 18 17 35 35 H 1.09002 * 109.46999 * 300.00103 * 21 20 19 36 36 H 1.08999 * 109.47670 * 59.99628 * 21 20 19 37 37 H 0.96698 * 116.99821 * 179.97438 * 24 22 21 38 38 H 1.08005 * 120.12522 * 179.74899 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8835 2.3965 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2343 0.2875 9 6 1.3522 -2.4071 -0.3747 10 6 0.2209 -2.3625 -1.2106 11 6 -0.4090 -3.5319 -1.5697 12 6 0.0635 -4.7506 -1.1067 13 6 1.1802 -4.8068 -0.2876 14 16 1.7713 -6.3649 0.2848 15 8 1.3102 -7.3352 -0.6453 16 8 3.1447 -6.1817 0.6004 17 7 1.0014 -6.6855 1.7155 18 6 -0.4486 -6.8939 1.7364 19 6 -0.8534 -7.5293 3.0680 20 8 -0.5875 -6.6142 4.1329 21 6 -0.9311 -7.1129 5.4272 22 6 -0.6110 -6.0712 6.4681 23 8 -0.1369 -5.0107 6.1356 24 8 -0.8527 -6.3214 7.7645 25 6 1.8262 -3.6497 0.0844 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1514 -1.4141 -1.5687 28 1 -1.2776 -3.5002 -2.2108 29 1 -0.4398 -5.6631 -1.3901 30 1 1.5105 -6.7355 2.5396 31 1 -0.9550 -5.9355 1.6224 32 1 -0.7326 -7.5546 0.9173 33 1 -1.9172 -7.7658 3.0492 34 1 -0.2807 -8.4437 3.2232 35 1 -1.9966 -7.3410 5.4576 36 1 -0.3598 -8.0184 5.6312 37 1 -0.6305 -5.6230 8.3952 38 1 2.6938 -3.6955 0.7261 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619470529.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:23 Heat of formation + Delta-G solvation = -191.742002 kcal Electronic energy + Delta-G solvation = -25496.140555 eV Core-core repulsion = 21430.624805 eV Total energy + Delta-G solvation = -4065.515750 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.45072 -38.35280 -37.58642 -36.63906 -36.30270 -35.27603 -34.92020 -33.79738 -30.02952 -29.85611 -29.73626 -27.80820 -25.44493 -22.72895 -22.05844 -21.83497 -20.93316 -19.11901 -18.40226 -17.98149 -17.23171 -17.00281 -16.79735 -16.64067 -15.99148 -15.87829 -15.22497 -15.01027 -14.76709 -14.40869 -14.05874 -13.45220 -13.38399 -13.27398 -12.81534 -12.59838 -12.52634 -11.99236 -11.85473 -11.74261 -11.57777 -11.49995 -11.35219 -11.33566 -11.17994 -10.94337 -10.85823 -10.69005 -10.55549 -10.09137 -9.75217 -9.62984 -9.31140 -9.12035 -7.98999 -7.65473 -6.88267 -4.48317 1.07691 1.95562 2.24201 2.26781 2.67328 3.03884 3.07968 3.11249 3.56472 3.73776 3.87433 4.28118 4.47551 4.62067 4.71359 4.81157 4.89541 4.91925 5.05192 5.16425 5.44726 5.49205 5.76291 6.02059 6.10512 6.21214 6.21949 6.69226 6.71076 6.80848 6.89628 7.07836 7.24848 7.29510 7.43458 7.64806 7.76949 7.86319 7.99424 8.45498 8.71835 8.76951 10.07284 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.009401 B = 0.003953 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.638555 B = 7081.816036 C = 9032.558832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.459 4.459 8 H 0.083 0.917 9 C 0.092 3.908 10 C -0.119 4.119 11 C -0.121 4.121 12 C -0.152 4.152 13 C -0.631 4.631 14 S 2.691 3.309 15 O -0.977 6.977 16 O -0.972 6.972 17 N -1.118 6.118 18 C 0.122 3.878 19 C 0.057 3.943 20 O -0.361 6.361 21 C 0.072 3.928 22 C 0.473 3.527 23 O -0.483 6.483 24 O -0.519 6.519 25 C -0.121 4.121 26 H 0.282 0.718 27 H 0.124 0.876 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.417 0.583 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.416 0.584 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.827 -12.440 10.394 17.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.488 4.488 8 H 0.101 0.899 9 C 0.088 3.912 10 C -0.139 4.139 11 C -0.140 4.140 12 C -0.173 4.173 13 C -0.723 4.723 14 S 2.787 3.213 15 O -0.968 6.968 16 O -0.963 6.963 17 N -0.877 5.877 18 C -0.004 4.004 19 C -0.020 4.020 20 O -0.281 6.281 21 C -0.006 4.006 22 C 0.313 3.687 23 O -0.368 6.368 24 O -0.333 6.333 25 C -0.142 4.142 26 H 0.093 0.907 27 H 0.142 0.858 28 H 0.116 0.884 29 H 0.124 0.876 30 H 0.251 0.749 31 H 0.099 0.901 32 H 0.115 0.885 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.276 0.724 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.403 -12.667 9.431 16.691 hybrid contribution 0.006 1.770 0.944 2.006 sum -5.396 -10.898 10.375 15.985 Atomic orbital electron populations 1.69794 1.07662 1.29467 1.34952 1.25934 0.94772 1.01554 0.92039 0.86208 0.81103 0.80561 0.78618 1.18196 1.19617 1.19862 1.19665 0.98425 0.90994 1.39764 0.89862 1.17689 0.91782 0.92012 0.89713 1.21624 0.97693 0.97152 0.97439 1.20796 0.99386 0.93177 1.00664 1.20059 0.97179 0.97235 1.02797 1.29718 1.09733 1.18114 1.14731 1.01583 0.72832 0.74665 0.72260 1.93503 1.82331 1.59589 1.61331 1.93539 1.31592 1.87303 1.83846 1.55467 1.16215 1.89130 1.26840 1.21288 0.80863 1.02317 0.95941 1.22855 1.00516 0.92266 0.86390 1.88065 1.85741 1.41565 1.12682 1.21577 1.02233 0.93824 0.82917 1.22954 0.75417 0.87854 0.82488 1.90843 1.38724 1.25823 1.81363 1.84431 1.79968 1.50816 1.18096 1.20790 1.00456 0.91627 1.01347 0.90677 0.85779 0.88440 0.87648 0.74874 0.90077 0.88542 0.91201 0.91810 0.88821 0.88842 0.72445 0.87039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.14 10.95 55.55 0.61 -19.53 16 2 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 3 Si 0.91 18.59 29.59 -169.99 -5.03 13.56 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.46 -12.17 9.05 -37.74 -0.34 -12.52 16 8 H 0.08 2.14 7.91 -52.49 -0.41 1.72 16 9 C 0.09 2.44 5.57 -106.83 -0.60 1.84 16 10 C -0.12 -3.03 8.70 -38.88 -0.34 -3.37 16 11 C -0.12 -2.74 10.02 -39.66 -0.40 -3.14 16 12 C -0.15 -3.29 9.53 -39.29 -0.37 -3.67 16 13 C -0.63 -14.03 5.94 -39.66 -0.24 -14.27 16 14 S 2.69 50.81 5.73 -107.50 -0.62 50.19 16 15 O -0.98 -19.44 16.74 -57.17 -0.96 -20.40 16 16 O -0.97 -20.86 17.27 -57.17 -0.99 -21.84 16 17 N -1.12 -16.58 5.96 -10.62 -0.06 -16.65 16 18 C 0.12 1.51 6.61 -4.04 -0.03 1.49 16 19 C 0.06 0.52 6.13 37.16 0.23 0.75 16 20 O -0.36 -4.27 9.68 -55.18 -0.53 -4.81 16 21 C 0.07 0.58 6.53 36.01 0.24 0.82 16 22 C 0.47 4.97 8.40 36.01 0.30 5.28 16 23 O -0.48 -7.64 17.26 -25.48 -0.44 -8.08 16 24 O -0.52 -3.68 13.42 -39.26 -0.53 -4.21 16 25 C -0.12 -3.01 9.26 -38.87 -0.36 -3.37 16 26 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 27 H 0.12 3.20 6.15 -52.49 -0.32 2.88 16 28 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 29 H 0.11 2.01 7.60 -52.49 -0.40 1.61 16 30 H 0.42 5.64 8.51 -34.46 -0.29 5.35 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.10 1.05 7.75 -51.93 -0.40 0.64 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.42 1.43 9.10 45.56 0.41 1.84 16 38 H 0.11 2.70 7.60 -52.48 -0.40 2.30 16 LS Contribution 350.52 15.07 5.28 5.28 Total: -1.00 -36.22 350.52 -8.75 -44.97 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -3.49 Total: 9.91 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: -1.99 Total: -28.39 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.55 Total: -36.18 kcal Atomic # 8 Polarization: -55.90 SS G_CDS: -3.45 Total: -59.34 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Atomic # 16 Polarization: 50.81 SS G_CDS: -0.62 Total: 50.19 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.22 -8.75 -44.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619470529.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.774 kcal (2) G-P(sol) polarization free energy of solvation -36.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds