Wall clock time and date at job start Tue Mar 31 2020 05:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34233 * 116.99210 * 2 1 4 4 O 1.20826 * 120.00352 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99761 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.47467 * 299.99935 * 5 3 2 7 7 C 1.53003 * 109.47307 * 60.00053 * 5 3 2 8 8 O 1.42899 * 109.46842 * 54.99875 * 7 5 3 9 9 N 1.46496 * 109.47471 * 180.02562 * 5 3 2 10 10 S 1.65600 * 120.00572 * 144.99825 * 9 5 3 11 11 O 1.42097 * 106.40227 * 311.46495 * 10 9 5 12 12 O 1.42098 * 106.40314 * 178.53832 * 10 9 5 13 13 C 1.76200 * 107.21533 * 65.00321 * 10 9 5 14 14 C 1.38657 * 119.87534 * 269.97735 * 13 10 9 15 15 C 1.38611 * 120.50450 * 180.02562 * 14 13 10 16 16 C 1.37644 * 120.24502 * 0.02562 * 15 14 13 17 17 C 1.40691 * 119.74527 * 359.97438 * 16 15 14 18 18 C 1.41396 * 120.24245 * 180.02562 * 17 16 15 19 19 H 1.08009 * 119.99598 * 150.21707 * 18 17 16 20 20 C 1.39943 * 120.00268 * 330.22360 * 18 17 16 21 21 N 1.30825 * 119.99976 * 161.72740 * 20 18 17 22 22 Si 1.86793 * 119.99780 * 341.72399 * 20 18 17 23 23 H 1.48503 * 109.47344 * 95.41200 * 22 20 18 24 24 H 1.48503 * 109.46947 * 215.41231 * 22 20 18 25 25 H 1.48503 * 109.47306 * 335.41258 * 22 20 18 26 26 C 1.37596 * 119.87915 * 90.00065 * 13 10 9 27 27 H 1.08999 * 109.47447 * 60.00081 * 1 2 3 28 28 H 1.09008 * 109.46653 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47510 * 299.99278 * 1 2 3 30 30 H 1.09000 * 109.47182 * 174.99461 * 7 5 3 31 31 H 1.08997 * 109.47052 * 295.00384 * 7 5 3 32 32 H 0.96696 * 114.00018 * 179.97438 * 8 7 5 33 33 H 0.97008 * 119.99776 * 325.00378 * 9 5 3 34 34 H 1.08003 * 119.74856 * 0.02562 * 14 13 10 35 35 H 1.08002 * 119.87783 * 179.97438 * 15 14 13 36 36 H 1.07997 * 120.12108 * 180.02562 * 16 15 14 37 37 H 0.97000 * 119.99656 * 180.02562 * 21 20 18 38 38 H 1.08001 * 120.12593 * 0.25677 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0612 1.1961 0.0000 4 8 1.4031 2.2094 -0.0005 5 6 3.5662 1.2751 0.0006 6 1 3.9557 0.7812 0.8908 7 6 4.1138 0.5814 -1.2483 8 8 3.5137 1.1529 -2.4124 9 7 3.9815 2.6800 0.0011 10 16 5.3424 3.1409 0.8243 11 8 5.2429 2.5641 2.1191 12 8 5.4907 4.5370 0.6046 13 6 6.7153 2.3651 0.0381 14 6 7.1345 1.1121 0.4588 15 6 8.2132 0.4900 -0.1501 16 6 8.8810 1.1118 -1.1806 17 6 8.4645 2.3832 -1.6158 18 6 9.1425 3.0313 -2.6738 19 1 8.6088 3.7122 -3.3204 20 6 10.5051 2.7904 -2.8833 21 7 11.0519 3.0847 -4.0348 22 14 11.5430 2.0487 -1.5188 23 1 11.6261 0.5776 -1.7039 24 1 12.9083 2.6312 -1.5631 25 1 10.9197 2.3478 -0.2045 26 6 7.3676 3.0050 -0.9906 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 5.1946 0.7152 -1.2939 31 1 3.8809 -0.4825 -1.2046 32 1 3.8153 0.7607 -3.2432 33 1 3.4592 3.3403 -0.4808 34 1 6.6166 0.6171 1.2669 35 1 8.5314 -0.4858 0.1860 36 1 9.7210 0.6251 -1.6538 37 1 11.9963 2.9174 -4.1801 38 1 7.0423 3.9828 -1.3136 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619495187.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:38 Heat of formation + Delta-G solvation = -184.361065 kcal Electronic energy + Delta-G solvation = -26640.607543 eV Core-core repulsion = 22575.411854 eV Total energy + Delta-G solvation = -4065.195689 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.70852 -38.07797 -37.51289 -36.83829 -36.55803 -35.51347 -34.58004 -33.86961 -30.83931 -30.26453 -29.61355 -27.56413 -25.48129 -24.10283 -22.48169 -21.12229 -20.93239 -19.58551 -18.46640 -17.94426 -17.40146 -17.32367 -16.66853 -16.45275 -16.36534 -15.62388 -15.39190 -14.99329 -14.76542 -14.41760 -13.95782 -13.86966 -13.59237 -13.25404 -12.95576 -12.80950 -12.41239 -12.33988 -12.02761 -11.97596 -11.83941 -11.75098 -11.72191 -11.56515 -11.13728 -10.98012 -10.87405 -10.78074 -10.45088 -10.11048 -10.02671 -9.89922 -9.60236 -9.30624 -8.37788 -7.97412 -7.16380 -4.72337 0.70832 1.79376 2.05817 2.32078 2.46095 2.93237 3.06525 3.14690 3.26136 3.78633 3.98052 4.02898 4.21200 4.45383 4.67573 4.80963 4.90754 4.99758 5.01903 5.08724 5.20353 5.30066 5.60636 5.67625 5.74677 5.90631 6.11783 6.16383 6.37907 6.47505 6.76727 6.94628 7.03671 7.09927 7.29074 7.53406 7.53894 7.57905 7.67854 8.10450 8.33377 8.53017 9.85161 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.019532 B = 0.003883 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.187384 B = 7209.108119 C = 7595.389975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.473 3.527 4 O -0.494 6.494 5 C 0.170 3.830 6 H 0.142 0.858 7 C 0.056 3.944 8 O -0.567 6.567 9 N -1.100 6.100 10 S 2.689 3.311 11 O -0.969 6.969 12 O -0.957 6.957 13 C -0.626 4.626 14 C -0.166 4.166 15 C -0.089 4.089 16 C -0.200 4.200 17 C 0.074 3.926 18 C -0.440 4.440 19 H 0.096 0.904 20 C 0.083 3.917 21 N -0.797 5.797 22 Si 0.907 3.093 23 H -0.268 1.268 24 H -0.286 1.286 25 H -0.243 1.243 26 C -0.096 4.096 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.386 0.614 33 H 0.427 0.573 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.289 0.711 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.676 -9.085 4.206 16.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.313 3.687 4 O -0.380 6.380 5 C 0.060 3.940 6 H 0.159 0.841 7 C -0.023 4.023 8 O -0.373 6.373 9 N -0.859 5.859 10 S 2.784 3.216 11 O -0.959 6.959 12 O -0.948 6.948 13 C -0.717 4.717 14 C -0.187 4.187 15 C -0.108 4.108 16 C -0.219 4.219 17 C 0.070 3.930 18 C -0.468 4.468 19 H 0.114 0.886 20 C -0.137 4.137 21 N -0.420 5.420 22 Si 0.733 3.267 23 H -0.194 1.194 24 H -0.213 1.213 25 H -0.166 1.166 26 C -0.117 4.117 27 H 0.082 0.918 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.234 0.766 33 H 0.264 0.736 34 H 0.130 0.870 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.099 0.901 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.934 -7.911 5.275 16.053 hybrid contribution 0.919 -0.787 -0.781 1.440 sum -12.015 -8.698 4.493 15.499 Atomic orbital electron populations 1.23276 0.76095 1.03684 1.02665 1.86470 1.23580 1.32960 1.84202 1.23439 0.91461 0.81685 0.72081 1.90647 1.66452 1.36370 1.44549 1.20338 0.88540 0.84300 1.00852 0.84074 1.22783 0.98892 0.96166 0.84498 1.86428 1.69443 1.65099 1.16358 1.55521 1.44576 1.13920 1.71860 1.01810 0.72846 0.73504 0.73417 1.93531 1.86349 1.79432 1.36589 1.93578 1.85693 1.29625 1.85889 1.29901 1.20223 1.08266 1.13341 1.20048 1.01404 0.94736 1.02542 1.20693 0.95691 0.98450 0.95993 1.21309 1.02827 0.96145 1.01653 1.17778 0.92366 0.91238 0.91657 1.19554 0.94337 1.22902 1.09999 0.88592 1.26180 0.98917 0.92573 0.96042 1.69677 1.14633 1.35382 1.22284 0.86359 0.78112 0.79050 0.83200 1.19395 1.21288 1.16579 1.20867 0.98316 0.98174 0.94350 0.91766 0.88007 0.91859 0.89746 0.91257 0.76576 0.73643 0.86975 0.87809 0.87602 0.90077 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.55 101.05 1.07 1.37 16 2 O -0.36 -3.98 10.49 -39.27 -0.41 -4.39 16 3 C 0.47 6.37 6.84 36.01 0.25 6.62 16 4 O -0.49 -7.83 15.74 -18.75 -0.30 -8.13 16 5 C 0.17 2.19 3.22 -69.08 -0.22 1.97 16 6 H 0.14 1.55 7.50 -51.93 -0.39 1.16 16 7 C 0.06 0.65 6.82 37.16 0.25 0.91 16 8 O -0.57 -6.85 13.09 -35.23 -0.46 -7.31 16 9 N -1.10 -16.31 5.21 -5.88 -0.03 -16.34 16 10 S 2.69 47.26 5.71 -107.50 -0.61 46.65 16 11 O -0.97 -18.11 16.60 -57.17 -0.95 -19.06 16 12 O -0.96 -19.49 17.26 -57.17 -0.99 -20.47 16 13 C -0.63 -11.98 4.94 -39.66 -0.20 -12.17 16 14 C -0.17 -3.01 8.71 -39.29 -0.34 -3.35 16 15 C -0.09 -1.67 10.02 -39.66 -0.40 -2.07 16 16 C -0.20 -4.29 7.18 -38.87 -0.28 -4.57 16 17 C 0.07 1.71 5.10 -106.83 -0.55 1.17 16 18 C -0.44 -11.06 9.57 -37.74 -0.36 -11.42 16 19 H 0.10 2.52 8.06 -52.48 -0.42 2.10 16 20 C 0.08 2.04 5.40 -17.34 -0.09 1.95 16 21 N -0.80 -19.95 13.93 55.55 0.77 -19.18 16 22 Si 0.91 19.38 24.52 -169.99 -4.17 15.21 16 23 H -0.27 -5.44 6.71 56.52 0.38 -5.06 16 24 H -0.29 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.24 -5.37 6.86 56.52 0.39 -4.98 16 26 C -0.10 -2.08 9.26 -38.87 -0.36 -2.44 16 27 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 28 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 29 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 30 H 0.08 1.08 6.17 -51.93 -0.32 0.76 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.39 3.18 9.12 45.56 0.42 3.59 16 33 H 0.43 6.23 8.21 -34.47 -0.28 5.94 16 34 H 0.11 1.75 7.60 -52.48 -0.40 1.35 16 35 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.11 2.26 4.73 -52.49 -0.25 2.01 16 37 H 0.29 6.52 8.30 -40.82 -0.34 6.18 16 38 H 0.12 2.56 7.60 -52.49 -0.40 2.16 16 LS Contribution 338.75 15.07 5.10 5.10 Total: -1.00 -31.99 338.75 -6.60 -38.59 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -3.33 Total: 11.39 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -1.23 Total: -22.05 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.74 Total: -35.52 kcal Atomic # 8 Polarization: -56.27 SS G_CDS: -3.10 Total: -59.37 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.17 Total: 15.21 kcal Atomic # 16 Polarization: 47.26 SS G_CDS: -0.61 Total: 46.65 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.99 -6.60 -38.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619495187.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.776 kcal (2) G-P(sol) polarization free energy of solvation -31.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds