Wall clock time and date at job start Tue Mar 31 2020 05:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34224 * 117.00363 * 2 1 4 4 O 1.20835 * 119.99821 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00474 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.46827 * 59.99301 * 5 3 2 7 7 C 1.52997 * 109.46795 * 299.99990 * 5 3 2 8 8 O 1.42898 * 109.47352 * 304.99692 * 7 5 3 9 9 N 1.46491 * 109.47316 * 179.97438 * 5 3 2 10 10 S 1.65610 * 120.00068 * 215.00105 * 9 5 3 11 11 O 1.42097 * 106.40410 * 178.26439 * 10 9 5 12 12 O 1.42100 * 106.39603 * 311.18445 * 10 9 5 13 13 C 1.76201 * 107.21608 * 64.72234 * 10 9 5 14 14 C 1.38655 * 119.87572 * 269.72642 * 13 10 9 15 15 C 1.38616 * 120.50127 * 179.72445 * 14 13 10 16 16 C 1.37637 * 120.24381 * 0.55359 * 15 14 13 17 17 C 1.40694 * 119.74680 * 359.72697 * 16 15 14 18 18 C 1.41397 * 120.24392 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99831 * 204.36948 * 18 17 16 20 20 C 1.39944 * 120.00424 * 24.36549 * 18 17 16 21 21 N 1.30833 * 119.99678 * 17.88498 * 20 18 17 22 22 Si 1.86800 * 120.00530 * 197.88197 * 20 18 17 23 23 H 1.48498 * 109.47014 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47153 * 120.00188 * 22 20 18 25 25 H 1.48499 * 109.46825 * 240.00301 * 22 20 18 26 26 C 1.37594 * 119.87483 * 90.00689 * 13 10 9 27 27 H 1.08999 * 109.47134 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47160 * 300.00657 * 1 2 3 29 29 H 1.09002 * 109.46673 * 60.00478 * 1 2 3 30 30 H 1.09002 * 109.47546 * 64.99973 * 7 5 3 31 31 H 1.09003 * 109.46870 * 184.99927 * 7 5 3 32 32 H 0.96695 * 114.00406 * 180.02562 * 8 7 5 33 33 H 0.96997 * 120.00464 * 34.71932 * 9 5 3 34 34 H 1.08007 * 119.75012 * 0.02562 * 14 13 10 35 35 H 1.07997 * 119.87879 * 180.25790 * 15 14 13 36 36 H 1.08006 * 120.12861 * 179.74798 * 16 15 14 37 37 H 0.96995 * 119.99625 * 179.97438 * 21 20 18 38 38 H 1.08003 * 120.12638 * 359.97216 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9564 0.7804 -0.8891 7 6 4.1129 0.5815 1.2502 8 8 3.5119 1.1535 2.4136 9 7 3.9818 2.6796 -0.0002 10 16 5.3435 3.1400 -0.8225 11 8 5.4501 4.5483 -0.6658 12 8 6.3696 2.2353 -0.4378 13 6 5.0416 2.8513 -2.5343 14 6 5.3709 1.6275 -3.0969 15 6 5.1338 1.3844 -4.4408 16 6 4.5782 2.3619 -5.2347 17 6 4.2454 3.6095 -4.6759 18 6 3.6736 4.6210 -5.4816 19 1 3.7755 5.6585 -5.1991 20 6 2.9757 4.2780 -6.6451 21 7 2.5474 3.0533 -6.8139 22 14 2.6556 5.5685 -7.9571 23 1 3.2390 6.8652 -7.5288 24 1 3.2821 5.1421 -9.2341 25 1 1.1916 5.7240 -8.1516 26 6 4.4853 3.8431 -3.3090 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 3.8799 -0.4825 1.2067 31 1 5.1937 0.7152 1.2965 32 1 3.8128 0.7616 3.2448 33 1 3.4570 3.3408 0.4776 34 1 5.8110 0.8561 -2.4822 35 1 5.3904 0.4261 -4.8677 36 1 4.3980 2.1719 -6.2825 37 1 2.0634 2.8157 -7.6201 38 1 4.2334 4.7970 -2.8696 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619495188.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:40 Heat of formation + Delta-G solvation = -187.284919 kcal Electronic energy + Delta-G solvation = -26558.047247 eV Core-core repulsion = 22492.724770 eV Total energy + Delta-G solvation = -4065.322476 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.55157 -37.70372 -37.54475 -36.70157 -36.44967 -35.39409 -34.54906 -33.88293 -30.12606 -29.84745 -29.54197 -27.45485 -25.53709 -24.05895 -21.96430 -21.12178 -20.84874 -19.44309 -18.36582 -17.70902 -17.45166 -17.20393 -16.66128 -16.29939 -15.98081 -15.51590 -15.17128 -14.87365 -14.68315 -14.35936 -13.87536 -13.53066 -13.45583 -13.38121 -12.69444 -12.60849 -12.33478 -11.97792 -11.92635 -11.71897 -11.65412 -11.63365 -11.44745 -11.40652 -11.03132 -10.94139 -10.80876 -10.70474 -10.60631 -10.11400 -9.90233 -9.75026 -9.38692 -9.33763 -8.09744 -7.75143 -6.96341 -4.56663 0.87483 2.12295 2.23493 2.57739 2.59065 2.99234 3.02074 3.06292 3.41321 3.81392 3.96093 4.16802 4.36943 4.56491 4.75003 4.90402 5.04778 5.07247 5.16889 5.18522 5.36634 5.43567 5.53173 5.76882 5.99999 6.10026 6.33235 6.62394 6.72041 6.78977 6.99443 7.10843 7.17404 7.32852 7.42663 7.67303 7.74117 7.77890 7.90599 8.37180 8.63244 8.68042 9.99099 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.013597 B = 0.004279 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.725736 B = 6542.676895 C = 7538.371779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.470 3.530 4 O -0.489 6.489 5 C 0.173 3.827 6 H 0.139 0.861 7 C 0.062 3.938 8 O -0.568 6.568 9 N -1.099 6.099 10 S 2.689 3.311 11 O -0.963 6.963 12 O -0.970 6.970 13 C -0.636 4.636 14 C -0.159 4.159 15 C -0.118 4.118 16 C -0.120 4.120 17 C 0.092 3.908 18 C -0.457 4.457 19 H 0.084 0.916 20 C 0.075 3.925 21 N -0.793 5.793 22 Si 0.912 3.088 23 H -0.258 1.258 24 H -0.270 1.270 25 H -0.273 1.273 26 C -0.119 4.119 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.383 0.617 33 H 0.426 0.574 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.283 0.717 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.672 -8.598 10.893 13.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.309 3.691 4 O -0.374 6.374 5 C 0.063 3.937 6 H 0.156 0.844 7 C -0.018 4.018 8 O -0.374 6.374 9 N -0.857 5.857 10 S 2.785 3.215 11 O -0.953 6.953 12 O -0.960 6.960 13 C -0.728 4.728 14 C -0.180 4.180 15 C -0.137 4.137 16 C -0.139 4.139 17 C 0.088 3.912 18 C -0.487 4.487 19 H 0.102 0.898 20 C -0.143 4.143 21 N -0.418 5.418 22 Si 0.736 3.264 23 H -0.181 1.181 24 H -0.195 1.195 25 H -0.198 1.198 26 C -0.140 4.140 27 H 0.119 0.881 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.230 0.770 33 H 0.262 0.738 34 H 0.125 0.875 35 H 0.117 0.883 36 H 0.143 0.857 37 H 0.094 0.906 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.499 -7.853 10.611 13.286 hybrid contribution -0.909 0.214 -0.825 1.247 sum -2.409 -7.639 9.786 12.646 Atomic orbital electron populations 1.23271 0.76085 1.03585 1.02756 1.86442 1.23614 1.33027 1.84303 1.23427 0.91499 0.81772 0.72368 1.90669 1.66335 1.36295 1.44076 1.20272 0.88600 0.84269 1.00564 0.84410 1.22735 0.98316 0.96301 0.84399 1.86488 1.69690 1.64931 1.16280 1.55583 1.47997 1.13519 1.68605 1.01779 0.72242 0.73091 0.74365 1.93557 1.85055 1.29937 1.86760 1.93515 1.53709 1.66017 1.82794 1.29726 1.17743 1.03458 1.21888 1.20081 1.06684 0.94836 0.96409 1.20803 1.00599 0.98358 0.93966 1.21645 0.98400 0.94085 0.99803 1.17702 0.89902 0.93051 0.90542 1.19688 1.29043 0.94876 1.05043 0.89756 1.25953 0.93305 0.96334 0.98757 1.69788 1.26172 1.19637 1.26157 0.86187 0.78756 0.81476 0.79987 1.18138 1.19545 1.19822 1.20810 1.01960 0.96994 0.94260 0.88095 0.91920 0.91618 0.91134 0.90114 0.76996 0.73809 0.87453 0.88256 0.85688 0.90584 0.86902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.45 16 2 O -0.36 -4.70 10.49 -39.24 -0.41 -5.11 16 3 C 0.47 7.25 6.84 36.01 0.25 7.50 16 4 O -0.49 -8.92 15.73 -18.76 -0.30 -9.21 16 5 C 0.17 2.45 3.08 -69.09 -0.21 2.24 16 6 H 0.14 1.80 7.21 -51.93 -0.37 1.43 16 7 C 0.06 0.68 6.82 37.16 0.25 0.93 16 8 O -0.57 -6.14 13.09 -35.23 -0.46 -6.60 16 9 N -1.10 -17.53 5.22 -5.89 -0.03 -17.56 16 10 S 2.69 49.99 5.65 -107.50 -0.61 49.39 16 11 O -0.96 -20.45 17.27 -57.17 -0.99 -21.43 16 12 O -0.97 -18.23 16.48 -57.17 -0.94 -19.17 16 13 C -0.64 -13.70 5.79 -39.66 -0.23 -13.92 16 14 C -0.16 -3.29 8.91 -39.29 -0.35 -3.64 16 15 C -0.12 -2.56 10.02 -39.66 -0.40 -2.96 16 16 C -0.12 -2.94 8.70 -38.87 -0.34 -3.27 16 17 C 0.09 2.37 5.58 -106.83 -0.60 1.77 16 18 C -0.46 -11.80 9.05 -37.74 -0.34 -12.14 16 19 H 0.08 2.11 7.91 -52.48 -0.42 1.69 16 20 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 21 N -0.79 -19.52 10.95 55.55 0.61 -18.91 16 22 Si 0.91 18.09 29.60 -169.99 -5.03 13.06 16 23 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 24 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 25 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 26 C -0.12 -2.88 9.26 -38.88 -0.36 -3.24 16 27 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 29 H 0.07 0.74 8.13 -51.93 -0.42 0.31 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.87 7.59 -51.93 -0.39 0.48 16 32 H 0.38 2.20 9.12 45.56 0.42 2.61 16 33 H 0.43 6.65 8.20 -34.47 -0.28 6.37 16 34 H 0.11 1.90 7.59 -52.48 -0.40 1.50 16 35 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 36 H 0.13 3.12 6.15 -52.48 -0.32 2.80 16 37 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 38 H 0.11 2.66 7.60 -52.48 -0.40 2.26 16 LS Contribution 345.82 15.07 5.21 5.21 Total: -1.00 -33.17 345.82 -7.71 -40.89 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -3.42 Total: 13.02 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: -1.35 Total: -23.56 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.58 Total: -36.47 kcal Atomic # 8 Polarization: -58.44 SS G_CDS: -3.10 Total: -61.54 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Atomic # 16 Polarization: 49.99 SS G_CDS: -0.61 Total: 49.39 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.17 -7.71 -40.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619495188.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.397 kcal (2) G-P(sol) polarization free energy of solvation -33.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds