Wall clock time and date at job start Tue Mar 31 2020 05:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34225 * 117.00113 * 2 1 4 4 O 1.20832 * 119.99817 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00294 * 179.97438 * 3 2 1 6 6 H 1.09008 * 109.47067 * 60.00200 * 5 3 2 7 7 C 1.53001 * 109.47427 * 300.00600 * 5 3 2 8 8 O 1.42898 * 109.46652 * 304.99709 * 7 5 3 9 9 N 1.46499 * 109.47322 * 180.02562 * 5 3 2 10 10 S 1.65597 * 119.99973 * 214.43085 * 9 5 3 11 11 O 1.42100 * 106.40619 * 310.36226 * 10 9 5 12 12 O 1.42106 * 106.40219 * 177.43741 * 10 9 5 13 13 C 1.76200 * 107.21826 * 63.90213 * 10 9 5 14 14 C 1.37639 * 120.12845 * 244.01247 * 13 10 9 15 15 C 1.38616 * 120.24788 * 180.32246 * 14 13 10 16 16 C 1.38664 * 120.50152 * 359.66454 * 15 14 13 17 17 C 1.37594 * 120.24560 * 0.02562 * 16 15 14 18 18 C 1.40704 * 120.12861 * 63.70518 * 13 10 9 19 19 C 1.41394 * 120.24316 * 359.97438 * 18 13 10 20 20 H 1.08003 * 120.00152 * 335.27929 * 19 18 13 21 21 C 1.39941 * 119.99958 * 155.28139 * 19 18 13 22 22 N 1.30826 * 120.00268 * 332.15614 * 21 19 18 23 23 Si 1.86809 * 119.99936 * 152.15875 * 21 19 18 24 24 H 1.48496 * 109.46884 * 179.97438 * 23 21 19 25 25 H 1.48496 * 109.46946 * 300.00166 * 23 21 19 26 26 H 1.48506 * 109.46736 * 59.99976 * 23 21 19 27 27 H 1.09000 * 109.47558 * 60.00055 * 1 2 3 28 28 H 1.09000 * 109.47349 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47587 * 299.99784 * 1 2 3 30 30 H 1.09004 * 109.47253 * 64.99488 * 7 5 3 31 31 H 1.08991 * 109.47270 * 184.99667 * 7 5 3 32 32 H 0.96705 * 113.99632 * 179.97438 * 8 7 5 33 33 H 0.96999 * 120.00109 * 34.43607 * 9 5 3 34 34 H 1.07994 * 119.87664 * 0.02562 * 14 13 10 35 35 H 1.07996 * 119.75441 * 179.69544 * 15 14 13 36 36 H 1.07995 * 119.87672 * 180.02562 * 16 15 14 37 37 H 1.08000 * 120.12435 * 180.02562 * 17 16 15 38 38 H 0.97001 * 119.99273 * 356.22471 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9563 0.7806 -0.8892 7 6 4.1129 0.5814 1.2501 8 8 3.5119 1.1534 2.4136 9 7 3.9816 2.6797 0.0011 10 16 5.3510 3.1385 -0.8092 11 8 6.3782 2.2467 -0.3984 12 8 5.4455 4.5497 -0.6705 13 6 5.0744 2.8243 -2.5207 14 6 5.8421 1.8952 -3.1854 15 6 5.6311 1.6508 -4.5335 16 6 4.6417 2.3324 -5.2258 17 6 3.8580 3.2609 -4.5801 18 6 4.0634 3.5174 -3.2116 19 6 3.2638 4.4689 -2.5375 20 1 3.1289 4.4004 -1.4681 21 6 2.6472 5.4994 -3.2559 22 7 3.1838 5.9344 -4.3669 23 14 1.0577 6.2541 -2.6284 24 1 0.6123 7.3184 -3.5633 25 1 0.0122 5.2032 -2.5394 26 1 1.2855 6.8408 -1.2833 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.8799 -0.4825 1.2065 31 1 5.1936 0.7151 1.2964 32 1 3.8123 0.7609 3.2447 33 1 3.4546 3.3412 0.4761 34 1 6.6151 1.3581 -2.6559 35 1 6.2414 0.9237 -5.0483 36 1 4.4857 2.1338 -6.2758 37 1 3.0878 3.7904 -5.1211 38 1 4.0369 5.5810 -4.6642 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619573157.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:42 Heat of formation + Delta-G solvation = -192.493590 kcal Electronic energy + Delta-G solvation = -27551.653811 eV Core-core repulsion = 23486.105469 eV Total energy + Delta-G solvation = -4065.548341 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.39321 -37.85554 -37.37918 -36.35544 -36.27743 -34.96746 -34.37321 -34.09864 -30.25080 -29.58241 -29.26227 -27.34126 -25.40407 -23.89374 -21.86657 -21.25580 -20.72352 -19.14471 -18.38732 -17.79646 -17.28349 -17.07961 -16.48682 -16.26790 -16.04464 -15.28919 -14.92096 -14.66144 -14.28359 -14.14637 -13.80696 -13.66390 -13.39278 -13.25634 -12.59790 -12.52236 -12.24824 -12.18505 -11.80703 -11.66235 -11.38490 -11.27252 -11.20802 -11.14712 -11.09319 -10.69304 -10.56697 -10.48455 -10.45669 -9.96340 -9.88786 -9.67578 -9.24638 -8.99131 -8.26419 -7.88488 -7.54849 -4.86432 1.33383 2.19823 2.40620 2.64615 2.73805 3.10426 3.20857 3.32517 3.70351 3.87280 4.10876 4.28797 4.59725 4.73673 4.95266 5.08842 5.14453 5.21736 5.24105 5.27965 5.46332 5.52667 5.67666 5.88139 6.01783 6.03001 6.28688 6.46553 6.60795 6.87158 7.08205 7.26217 7.32147 7.41746 7.52834 7.55655 7.62696 7.77768 7.91282 7.95495 8.32074 8.53245 9.71238 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.010182 B = 0.006758 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.316989 B = 4142.090909 C = 5051.885646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.361 6.361 3 C 0.467 3.533 4 O -0.481 6.481 5 C 0.179 3.821 6 H 0.133 0.867 7 C 0.062 3.938 8 O -0.567 6.567 9 N -1.099 6.099 10 S 2.701 3.299 11 O -0.994 6.994 12 O -0.957 6.957 13 C -0.794 4.794 14 C 0.014 3.986 15 C -0.268 4.268 16 C -0.054 4.054 17 C -0.212 4.212 18 C 0.159 3.841 19 C -0.483 4.483 20 H 0.092 0.908 21 C 0.044 3.956 22 N -0.762 5.762 23 Si 1.062 2.938 24 H -0.271 1.271 25 H -0.269 1.269 26 H -0.267 1.267 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.381 0.619 33 H 0.423 0.577 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.590 -10.786 7.537 13.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.278 6.278 3 C 0.307 3.693 4 O -0.366 6.366 5 C 0.068 3.932 6 H 0.151 0.849 7 C -0.018 4.018 8 O -0.372 6.372 9 N -0.856 5.856 10 S 2.798 3.202 11 O -0.985 6.985 12 O -0.948 6.948 13 C -0.890 4.890 14 C -0.006 4.006 15 C -0.289 4.289 16 C -0.073 4.073 17 C -0.232 4.232 18 C 0.153 3.847 19 C -0.509 4.509 20 H 0.110 0.890 21 C -0.182 4.182 22 N -0.382 5.382 23 Si 0.883 3.117 24 H -0.195 1.195 25 H -0.194 1.194 26 H -0.192 1.192 27 H 0.082 0.918 28 H 0.117 0.883 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.228 0.772 33 H 0.259 0.741 34 H 0.128 0.872 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.128 0.872 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.399 -8.719 7.026 12.031 hybrid contribution 0.664 -1.478 0.050 1.621 sum -3.735 -10.197 7.077 12.962 Atomic orbital electron populations 1.23228 0.76433 1.03322 1.02699 1.86443 1.23359 1.33370 1.84584 1.23497 0.91593 0.81674 0.72585 1.90681 1.66201 1.36149 1.43529 1.20143 0.88307 0.84823 0.99940 0.84939 1.22757 0.98320 0.96093 0.84609 1.86505 1.69661 1.64875 1.16202 1.55719 1.47518 1.12935 1.69426 1.01181 0.71594 0.73149 0.74229 1.93447 1.54803 1.67375 1.82846 1.93561 1.84990 1.29321 1.86924 1.29685 1.15197 1.21587 1.22526 1.20312 0.93906 0.91995 0.94382 1.20417 1.05480 1.07966 0.95028 1.20815 0.94414 0.94588 0.97489 1.21313 1.03073 1.02991 0.95815 1.16957 0.86957 0.89063 0.91683 1.21017 1.23227 1.08460 0.98159 0.89047 1.27200 1.03404 0.94544 0.93048 1.70486 1.16983 1.32646 1.18121 0.83682 0.73548 0.77174 0.77251 1.19506 1.19351 1.19159 0.91773 0.88321 0.91968 0.91492 0.90251 0.77229 0.74056 0.87191 0.88515 0.88645 0.87195 0.88169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.55 101.05 1.07 1.48 16 2 O -0.36 -5.08 10.49 -39.24 -0.41 -5.49 16 3 C 0.47 7.85 6.84 36.01 0.25 8.10 16 4 O -0.48 -9.49 15.73 -18.75 -0.30 -9.78 16 5 C 0.18 2.85 3.09 -69.08 -0.21 2.64 16 6 H 0.13 1.97 7.79 -51.92 -0.40 1.57 16 7 C 0.06 0.78 6.82 37.16 0.25 1.03 16 8 O -0.57 -7.03 13.09 -35.23 -0.46 -7.49 16 9 N -1.10 -20.55 4.28 -5.88 -0.03 -20.58 16 10 S 2.70 58.42 4.86 -107.50 -0.52 57.90 16 11 O -0.99 -21.11 16.14 -57.17 -0.92 -22.03 16 12 O -0.96 -24.04 16.61 -57.17 -0.95 -24.99 16 13 C -0.79 -18.58 5.71 -38.87 -0.22 -18.80 16 14 C 0.01 0.30 9.53 -39.66 -0.38 -0.07 16 15 C -0.27 -5.64 10.05 -39.28 -0.39 -6.03 16 16 C -0.05 -1.18 10.02 -39.66 -0.40 -1.57 16 17 C -0.21 -5.13 7.99 -38.87 -0.31 -5.44 16 18 C 0.16 4.00 5.31 -106.82 -0.57 3.44 16 19 C -0.48 -12.39 7.69 -37.74 -0.29 -12.68 16 20 H 0.09 2.29 5.63 -52.48 -0.30 2.00 16 21 C 0.04 1.11 4.88 -17.34 -0.08 1.02 16 22 N -0.76 -19.52 12.37 55.55 0.69 -18.83 16 23 Si 1.06 21.78 30.01 -169.99 -5.10 16.68 16 24 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 25 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 26 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 27 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 28 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.68 8.13 -51.93 -0.42 0.25 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.01 7.52 -51.93 -0.39 0.62 16 32 H 0.38 2.73 9.12 45.56 0.42 3.15 16 33 H 0.42 7.95 7.93 -34.47 -0.27 7.68 16 34 H 0.11 2.15 7.33 -52.49 -0.38 1.76 16 35 H 0.10 1.76 8.06 -52.49 -0.42 1.33 16 36 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.11 2.69 6.51 -52.49 -0.34 2.35 16 38 H 0.30 7.98 6.74 -40.82 -0.28 7.70 16 LS Contribution 340.62 15.07 5.13 5.13 Total: -1.00 -33.10 340.62 -7.44 -40.54 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -3.28 Total: 15.84 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: -1.29 Total: -26.90 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.66 Total: -39.41 kcal Atomic # 8 Polarization: -66.75 SS G_CDS: -3.04 Total: -69.79 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.10 Total: 16.68 kcal Atomic # 16 Polarization: 58.42 SS G_CDS: -0.52 Total: 57.90 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.10 -7.44 -40.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619573157.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.952 kcal (2) G-P(sol) polarization free energy of solvation -33.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds