Wall clock time and date at job start Tue Mar 31 2020 05:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 O 1.42099 * 110.54106 * 2 1 4 4 O 1.42102 * 110.54389 * 223.24719 * 2 1 3 5 5 N 1.65607 * 104.44862 * 111.62092 * 2 1 3 6 6 C 1.46507 * 119.99691 * 65.00088 * 5 2 1 7 7 C 1.53002 * 109.46880 * 165.00020 * 6 5 2 8 8 O 1.45192 * 109.46831 * 64.99784 * 7 6 5 9 9 C 1.34763 * 116.99726 * 179.97438 * 8 7 6 10 10 O 1.21513 * 119.99703 * 0.02562 * 9 8 7 11 11 C 1.47398 * 120.00219 * 180.02562 * 9 8 7 12 12 C 1.39729 * 120.19992 * 359.97438 * 11 9 8 13 13 C 1.37805 * 119.91272 * 179.97438 * 12 11 9 14 14 C 1.38588 * 120.33007 * 0.02562 * 13 12 11 15 15 C 1.38028 * 120.41707 * 359.97438 * 14 13 12 16 16 C 1.38832 * 120.07606 * 359.97438 * 15 14 13 17 17 O 1.35505 * 120.16557 * 179.97438 * 16 15 14 18 18 C 1.34808 * 116.99939 * 354.39821 * 17 16 15 19 19 H 1.08001 * 120.00267 * 5.06438 * 18 17 16 20 20 C 1.38707 * 119.99753 * 185.06265 * 18 17 16 21 21 N 1.31517 * 119.99994 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99839 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47364 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47284 * 119.99880 * 22 20 18 25 25 H 1.48505 * 109.47333 * 240.00171 * 22 20 18 26 26 H 1.08997 * 109.46880 * 308.37571 * 1 2 3 27 27 H 1.08995 * 109.46951 * 68.38073 * 1 2 3 28 28 H 1.09002 * 109.46894 * 188.37698 * 1 2 3 29 29 H 0.96995 * 120.00272 * 245.00528 * 5 2 1 30 30 H 1.08998 * 109.46871 * 44.99881 * 6 5 2 31 31 H 1.09001 * 109.47288 * 285.00231 * 6 5 2 32 32 H 1.09000 * 109.46665 * 305.00289 * 7 6 5 33 33 H 1.08994 * 109.46869 * 185.00214 * 7 6 5 34 34 H 1.07997 * 120.04805 * 0.26151 * 12 11 9 35 35 H 1.07992 * 119.83705 * 180.02562 * 13 12 11 36 36 H 1.08000 * 119.79247 * 179.97438 * 14 13 12 37 37 H 1.08000 * 119.96099 * 180.02562 * 15 14 13 38 38 H 0.97001 * 119.99735 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2273 -0.5909 1.4909 6 6 1.8908 -1.9706 1.8509 7 6 2.6875 -2.3830 3.0903 8 8 2.2703 -1.5774 4.2239 9 6 2.8793 -1.8171 5.4019 10 8 3.7359 -2.6755 5.4794 11 6 2.5064 -1.0381 6.5964 12 6 1.5224 -0.0496 6.5119 13 6 1.1780 0.6748 7.6324 14 6 1.8034 0.4286 8.8445 15 6 2.7772 -0.5445 8.9434 16 6 3.1367 -1.2853 7.8256 17 8 4.0929 -2.2407 7.9205 18 6 4.7391 -2.3449 9.0990 19 1 4.4310 -1.7402 9.9391 20 6 5.7995 -3.2289 9.2327 21 7 6.1750 -3.9650 8.2095 22 14 6.6944 -3.3739 10.8659 23 1 6.0832 -2.4442 11.8496 24 1 6.5863 -4.7674 11.3678 25 1 8.1257 -3.0248 10.6789 26 1 -0.3633 0.6380 0.8056 27 1 -0.3633 0.3786 -0.9553 28 1 -0.3633 -1.0167 0.1497 29 1 2.6920 -0.0236 2.1257 30 1 2.1394 -2.6333 1.0220 31 1 0.8242 -2.0405 2.0647 32 1 3.7508 -2.2286 2.9066 33 1 2.5051 -3.4357 3.3058 34 1 1.0291 0.1432 5.5707 35 1 0.4171 1.4382 7.5658 36 1 1.5271 1.0018 9.7171 37 1 3.2595 -0.7305 9.8917 38 1 6.9164 -4.5835 8.3031 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730602256.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:55 Heat of formation + Delta-G solvation = -151.038067 kcal Electronic energy + Delta-G solvation = -25445.893998 eV Core-core repulsion = 21382.143303 eV Total energy + Delta-G solvation = -4063.750695 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.93617 -38.78313 -37.34734 -36.53754 -36.33277 -36.14941 -34.83305 -32.46596 -30.85748 -29.79940 -29.13664 -28.95104 -25.54796 -24.00082 -22.51845 -21.58196 -20.32156 -19.70689 -18.13792 -17.98288 -17.53810 -16.92642 -16.64297 -16.48097 -15.85990 -15.66576 -14.90491 -14.72654 -14.52207 -14.18734 -13.94379 -13.82575 -13.66875 -13.48541 -13.37534 -13.01735 -12.70474 -12.44634 -12.33546 -12.21991 -12.10922 -11.81190 -11.55441 -11.41734 -11.31099 -11.18312 -10.99364 -10.84062 -10.51285 -10.22696 -9.83727 -9.73526 -9.32467 -8.98802 -8.39523 -7.44551 -6.56681 -4.16385 0.01333 1.53119 2.24164 2.45644 3.05519 3.06792 3.11693 3.12534 3.37958 3.55796 3.84334 3.92472 4.40991 4.48570 4.57737 4.65180 4.94865 4.95883 5.07365 5.14783 5.23849 5.32832 5.44584 5.50871 5.60142 5.76334 5.77160 6.01965 6.06202 6.49676 6.57815 6.76867 6.82181 6.90660 7.03193 7.16588 7.23763 7.59114 7.81833 8.62630 8.83651 9.51892 10.56974 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.017887 B = 0.002824 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.968573 B = 9914.070588 C =11035.869283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.673 4.673 2 S 2.616 3.384 3 O -0.959 6.959 4 O -0.960 6.960 5 N -1.116 6.116 6 C 0.120 3.880 7 C 0.060 3.940 8 O -0.367 6.367 9 C 0.498 3.502 10 O -0.475 6.475 11 C -0.218 4.218 12 C -0.016 4.016 13 C -0.235 4.235 14 C -0.043 4.043 15 C -0.238 4.238 16 C 0.191 3.809 17 O -0.125 6.125 18 C -0.403 4.403 19 H 0.097 0.903 20 C 0.045 3.955 21 N -0.831 5.831 22 Si 0.944 3.056 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.274 1.274 26 H 0.131 0.869 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.425 0.575 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.124 0.876 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.134 0.866 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.413 6.359 -10.284 17.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.823 4.823 2 S 2.708 3.292 3 O -0.950 6.950 4 O -0.950 6.950 5 N -0.877 5.877 6 C -0.006 4.006 7 C -0.016 4.016 8 O -0.287 6.287 9 C 0.343 3.657 10 O -0.361 6.361 11 C -0.221 4.221 12 C -0.034 4.034 13 C -0.254 4.254 14 C -0.062 4.062 15 C -0.257 4.257 16 C 0.131 3.869 17 O -0.023 6.023 18 C -0.478 4.478 19 H 0.114 0.886 20 C -0.163 4.163 21 N -0.462 5.462 22 Si 0.767 3.233 23 H -0.189 1.189 24 H -0.199 1.199 25 H -0.199 1.199 26 H 0.149 0.851 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.260 0.740 30 H 0.117 0.883 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.142 0.858 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.152 0.848 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.336 5.806 -11.317 17.038 hybrid contribution -0.048 -0.049 1.448 1.450 sum -11.385 5.757 -9.868 16.129 Atomic orbital electron populations 1.30528 1.28576 1.11686 1.11530 1.04644 0.77530 0.73849 0.73210 1.93628 1.77918 1.37688 1.85722 1.93615 1.77040 1.61914 1.62409 1.55508 1.74321 1.21392 1.36528 1.21440 0.99952 0.82441 0.96808 1.23013 0.99646 0.95652 0.83267 1.86492 1.63183 1.60606 1.18379 1.21090 0.79818 0.82493 0.82266 1.91019 1.29485 1.31074 1.84492 1.18003 1.08351 1.06260 0.89436 1.20938 0.92769 0.91635 0.98071 1.20538 1.06053 1.05342 0.93447 1.20974 0.93427 0.94813 0.96961 1.21122 1.03746 1.01617 0.99252 1.19229 0.88756 0.87339 0.91574 1.84134 1.40181 1.42249 1.35700 1.21587 1.13466 1.25077 0.87709 0.88553 1.25429 0.96130 0.95292 0.99498 1.70121 1.25276 1.20922 1.29850 0.85620 0.79187 0.78760 0.79688 1.18871 1.19919 1.19906 0.85051 0.85504 0.85405 0.73958 0.88290 0.90661 0.90364 0.89833 0.85810 0.87001 0.86959 0.84821 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -3.15 10.89 101.05 1.10 -2.05 16 2 S 2.62 22.35 6.10 -107.50 -0.66 21.69 16 3 O -0.96 -11.85 18.08 -57.54 -1.04 -12.89 16 4 O -0.96 -11.43 17.50 -57.54 -1.01 -12.44 16 5 N -1.12 -10.05 5.85 -10.61 -0.06 -10.11 16 6 C 0.12 1.05 6.53 -4.04 -0.03 1.02 16 7 C 0.06 0.78 5.66 37.16 0.21 0.99 16 8 O -0.37 -5.88 9.29 -40.66 -0.38 -6.26 16 9 C 0.50 10.58 7.89 34.46 0.27 10.85 16 10 O -0.47 -12.21 14.96 -26.59 -0.40 -12.61 16 11 C -0.22 -4.61 5.89 -104.82 -0.62 -5.22 16 12 C -0.02 -0.27 9.61 -39.18 -0.38 -0.64 16 13 C -0.23 -3.71 10.02 -39.61 -0.40 -4.10 16 14 C -0.04 -0.73 10.03 -39.53 -0.40 -1.12 16 15 C -0.24 -4.89 9.16 -39.44 -0.36 -5.25 16 16 C 0.19 4.55 6.66 -38.58 -0.26 4.30 16 17 O -0.12 -3.54 7.84 -20.99 -0.16 -3.71 16 18 C -0.40 -10.99 9.49 30.91 0.29 -10.69 16 19 H 0.10 2.38 5.21 -52.49 -0.27 2.10 16 20 C 0.04 1.21 5.49 -17.51 -0.10 1.11 16 21 N -0.83 -24.22 13.67 55.48 0.76 -23.46 16 22 Si 0.94 19.85 29.55 -169.99 -5.02 14.83 16 23 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 26 H 0.13 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.13 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.13 0.42 8.14 -51.92 -0.42 0.00 16 29 H 0.42 4.08 8.48 -34.48 -0.29 3.78 16 30 H 0.10 0.73 7.69 -51.93 -0.40 0.33 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.12 1.73 7.61 -52.49 -0.40 1.33 16 35 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 36 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 37 H 0.13 2.70 5.64 -52.49 -0.30 2.40 16 38 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 349.37 15.07 5.26 5.26 Total: -1.00 -37.98 349.37 -7.53 -45.51 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -4.18 Total: 5.01 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -0.65 Total: -10.83 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.70 Total: -33.58 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -2.99 Total: -47.90 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 22.35 SS G_CDS: -0.66 Total: 21.69 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -37.98 -7.53 -45.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730602256.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.526 kcal (2) G-P(sol) polarization free energy of solvation -37.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds