Wall clock time and date at job start Tue Mar 31 2020 05:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 O 1.42099 * 110.54106 * 2 1 4 4 O 1.42102 * 110.54389 * 223.24719 * 2 1 3 5 5 N 1.65607 * 104.44862 * 111.62092 * 2 1 3 6 6 C 1.46507 * 119.99691 * 65.00088 * 5 2 1 7 7 C 1.53002 * 109.46880 * 165.00020 * 6 5 2 8 8 O 1.45192 * 109.46831 * 64.99784 * 7 6 5 9 9 C 1.34763 * 116.99726 * 179.97438 * 8 7 6 10 10 O 1.21513 * 119.99703 * 0.02562 * 9 8 7 11 11 C 1.47398 * 120.00219 * 180.02562 * 9 8 7 12 12 C 1.39729 * 120.19992 * 359.97438 * 11 9 8 13 13 C 1.37805 * 119.91272 * 179.97438 * 12 11 9 14 14 C 1.38588 * 120.33007 * 0.02562 * 13 12 11 15 15 C 1.38028 * 120.41707 * 359.97438 * 14 13 12 16 16 C 1.38832 * 120.07606 * 359.97438 * 15 14 13 17 17 O 1.35505 * 120.16557 * 179.97438 * 16 15 14 18 18 C 1.34808 * 116.99939 * 354.39821 * 17 16 15 19 19 H 1.08001 * 120.00267 * 5.06438 * 18 17 16 20 20 C 1.38707 * 119.99753 * 185.06265 * 18 17 16 21 21 N 1.31517 * 119.99994 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99839 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47364 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47284 * 119.99880 * 22 20 18 25 25 H 1.48505 * 109.47333 * 240.00171 * 22 20 18 26 26 H 1.08997 * 109.46880 * 308.37571 * 1 2 3 27 27 H 1.08995 * 109.46951 * 68.38073 * 1 2 3 28 28 H 1.09002 * 109.46894 * 188.37698 * 1 2 3 29 29 H 0.96995 * 120.00272 * 245.00528 * 5 2 1 30 30 H 1.08998 * 109.46871 * 44.99881 * 6 5 2 31 31 H 1.09001 * 109.47288 * 285.00231 * 6 5 2 32 32 H 1.09000 * 109.46665 * 305.00289 * 7 6 5 33 33 H 1.08994 * 109.46869 * 185.00214 * 7 6 5 34 34 H 1.07997 * 120.04805 * 0.26151 * 12 11 9 35 35 H 1.07992 * 119.83705 * 180.02562 * 13 12 11 36 36 H 1.08000 * 119.79247 * 179.97438 * 14 13 12 37 37 H 1.08000 * 119.96099 * 180.02562 * 15 14 13 38 38 H 0.97001 * 119.99735 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2273 -0.5909 1.4909 6 6 1.8908 -1.9706 1.8509 7 6 2.6875 -2.3830 3.0903 8 8 2.2703 -1.5774 4.2239 9 6 2.8793 -1.8171 5.4019 10 8 3.7359 -2.6755 5.4794 11 6 2.5064 -1.0381 6.5964 12 6 1.5224 -0.0496 6.5119 13 6 1.1780 0.6748 7.6324 14 6 1.8034 0.4286 8.8445 15 6 2.7772 -0.5445 8.9434 16 6 3.1367 -1.2853 7.8256 17 8 4.0929 -2.2407 7.9205 18 6 4.7391 -2.3449 9.0990 19 1 4.4310 -1.7402 9.9391 20 6 5.7995 -3.2289 9.2327 21 7 6.1750 -3.9650 8.2095 22 14 6.6944 -3.3739 10.8659 23 1 6.0832 -2.4442 11.8496 24 1 6.5863 -4.7674 11.3678 25 1 8.1257 -3.0248 10.6789 26 1 -0.3633 0.6380 0.8056 27 1 -0.3633 0.3786 -0.9553 28 1 -0.3633 -1.0167 0.1497 29 1 2.6920 -0.0236 2.1257 30 1 2.1394 -2.6333 1.0220 31 1 0.8242 -2.0405 2.0647 32 1 3.7508 -2.2286 2.9066 33 1 2.5051 -3.4357 3.3058 34 1 1.0291 0.1432 5.5707 35 1 0.4171 1.4382 7.5658 36 1 1.5271 1.0018 9.7171 37 1 3.2595 -0.7305 9.8917 38 1 6.9164 -4.5835 8.3031 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730602256.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:54 Heat of formation + Delta-G solvation = -181.457446 kcal Electronic energy + Delta-G solvation = -25447.213081 eV Core-core repulsion = 21382.143303 eV Total energy + Delta-G solvation = -4065.069778 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.53508 -40.38801 -38.18659 -38.11370 -37.66231 -36.98173 -35.92356 -34.36648 -32.36234 -30.63000 -30.24114 -30.01670 -27.44688 -25.38921 -23.71107 -23.08458 -21.82611 -20.42564 -19.90321 -19.28607 -18.59394 -18.34545 -17.76911 -17.40996 -17.11637 -16.88261 -16.36058 -16.15243 -15.83534 -15.60023 -15.38103 -15.28461 -14.75437 -14.35982 -14.28812 -13.93365 -13.81160 -13.73782 -13.57202 -13.32646 -13.16460 -13.05153 -13.01893 -12.70785 -12.57992 -12.54683 -12.30065 -12.09725 -11.95161 -11.60966 -11.57665 -11.04167 -10.86684 -10.41406 -9.90435 -9.10215 -8.48643 -6.19408 -0.62313 -0.02066 0.70915 1.33402 1.43396 1.52814 1.67518 1.77179 1.83902 2.13860 2.83108 2.94757 3.16073 3.30907 3.38968 3.64002 3.95037 4.02148 4.11654 4.14864 4.24980 4.27025 4.37656 4.52141 4.52743 4.58806 4.75480 4.91968 4.97730 5.04354 5.06506 5.14624 5.39184 5.48817 5.62288 5.68689 5.93618 6.01101 6.14390 6.90781 7.01919 7.72138 8.71634 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.017887 B = 0.002824 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.968573 B = 9914.070588 C =11035.869283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.646 4.646 2 S 2.622 3.378 3 O -1.004 7.004 4 O -1.002 7.002 5 N -1.123 6.123 6 C 0.125 3.875 7 C 0.051 3.949 8 O -0.345 6.345 9 C 0.499 3.501 10 O -0.532 6.532 11 C -0.237 4.237 12 C -0.009 4.009 13 C -0.205 4.205 14 C -0.029 4.029 15 C -0.258 4.258 16 C 0.156 3.844 17 O -0.188 6.188 18 C -0.426 4.426 19 H 0.111 0.889 20 C -0.020 4.020 21 N -0.903 5.903 22 Si 1.022 2.978 23 H -0.244 1.244 24 H -0.269 1.269 25 H -0.270 1.270 26 H 0.150 0.850 27 H 0.146 0.854 28 H 0.152 0.848 29 H 0.421 0.579 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.163 0.837 35 H 0.166 0.834 36 H 0.158 0.842 37 H 0.128 0.872 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.646 9.200 -10.001 21.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.719 3.281 3 O -0.995 6.995 4 O -0.992 6.992 5 N -0.883 5.883 6 C 0.000 4.000 7 C -0.025 4.025 8 O -0.263 6.263 9 C 0.347 3.653 10 O -0.422 6.422 11 C -0.240 4.240 12 C -0.027 4.027 13 C -0.223 4.223 14 C -0.047 4.047 15 C -0.277 4.277 16 C 0.101 3.899 17 O -0.091 6.091 18 C -0.502 4.502 19 H 0.128 0.872 20 C -0.220 4.220 21 N -0.539 5.539 22 Si 0.841 3.159 23 H -0.167 1.167 24 H -0.194 1.194 25 H -0.196 1.196 26 H 0.168 0.832 27 H 0.164 0.836 28 H 0.170 0.830 29 H 0.255 0.745 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.181 0.819 35 H 0.183 0.817 36 H 0.175 0.825 37 H 0.146 0.854 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.603 8.714 -11.051 21.012 hybrid contribution 0.823 -0.626 1.147 1.545 sum -14.780 8.088 -9.904 19.543 Atomic orbital electron populations 1.30286 1.22249 1.14002 1.13546 1.04255 0.79560 0.72142 0.72151 1.93568 1.80287 1.39530 1.86077 1.93561 1.79472 1.62594 1.63580 1.55459 1.75152 1.21416 1.36267 1.21572 1.01243 0.82567 0.94661 1.23351 0.99744 0.95657 0.83727 1.86457 1.61783 1.60522 1.17513 1.21350 0.78868 0.81407 0.83697 1.91010 1.32070 1.33550 1.85588 1.18508 1.09319 1.07438 0.88695 1.21430 0.91036 0.89717 1.00547 1.21231 1.04904 1.04255 0.91892 1.21525 0.90995 0.92877 0.99287 1.21285 1.05453 1.02881 0.98130 1.20009 0.88414 0.87632 0.93845 1.84139 1.43011 1.45470 1.36439 1.22101 1.14104 1.25681 0.88291 0.87216 1.26754 0.96853 0.94683 1.03681 1.70299 1.27122 1.23472 1.32960 0.84497 0.77533 0.79166 0.74743 1.16713 1.19356 1.19557 0.83162 0.83555 0.82957 0.74460 0.86755 0.86853 0.92300 0.89895 0.81937 0.81686 0.82478 0.85437 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.02 10.89 113.37 1.23 -1.79 16 2 S 2.62 40.71 6.10 -56.49 -0.34 40.36 16 3 O -1.00 -24.32 18.08 -127.65 -2.31 -26.62 16 4 O -1.00 -23.22 17.50 -127.65 -2.23 -25.46 16 5 N -1.12 -18.49 5.85 -187.47 -1.10 -19.59 16 6 C 0.13 1.92 6.53 86.38 0.56 2.49 16 7 C 0.05 1.32 5.66 71.98 0.41 1.73 16 8 O -0.34 -10.83 9.29 -56.73 -0.53 -11.36 16 9 C 0.50 21.93 7.89 70.23 0.55 22.49 16 10 O -0.53 -29.54 14.96 26.79 0.40 -29.14 16 11 C -0.24 -10.01 5.89 -20.00 -0.12 -10.13 16 12 C -0.01 -0.28 9.61 22.53 0.22 -0.06 16 13 C -0.20 -5.19 10.02 22.25 0.22 -4.97 16 14 C -0.03 -0.84 10.03 22.30 0.22 -0.62 16 15 C -0.26 -10.45 9.16 22.36 0.20 -10.25 16 16 C 0.16 7.71 6.66 22.92 0.15 7.86 16 17 O -0.19 -11.51 7.84 1.07 0.01 -11.51 16 18 C -0.43 -24.82 9.49 67.93 0.64 -24.18 16 19 H 0.11 5.70 5.21 -2.91 -0.02 5.68 16 20 C -0.02 -1.15 5.49 84.85 0.47 -0.68 16 21 N -0.90 -57.23 13.67 21.62 0.30 -56.93 16 22 Si 1.02 42.78 29.55 68.60 2.03 44.81 16 23 H -0.24 -9.19 7.11 99.48 0.71 -8.48 16 24 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 25 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 26 H 0.15 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.15 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.15 0.11 8.14 -2.39 -0.02 0.10 16 29 H 0.42 7.75 8.48 -96.75 -0.82 6.93 16 30 H 0.11 1.47 7.69 -2.39 -0.02 1.45 16 31 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.16 3.59 7.61 -2.91 -0.02 3.57 16 35 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 37 H 0.13 5.20 5.64 -2.91 -0.02 5.19 16 38 H 0.27 15.76 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -94.54 349.37 1.29 -93.25 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.29 Total: 20.28 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: 4.77 Total: -18.10 kcal Atomic # 7 Polarization: -75.72 SS G_CDS: -0.80 Total: -76.52 kcal Atomic # 8 Polarization: -99.43 SS G_CDS: -4.66 Total: -104.09 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: 40.71 SS G_CDS: -0.34 Total: 40.36 kcal Total: -94.54 1.29 -93.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730602256.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.208 kcal (2) G-P(sol) polarization free energy of solvation -94.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds