Wall clock time and date at job start Tue Mar 31 2020 05:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99901 * 2 1 4 4 C 1.50699 * 109.47265 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99983 * 270.01950 * 4 3 2 6 6 C 1.38215 * 119.99730 * 180.02562 * 5 4 3 7 7 C 1.38252 * 120.00164 * 359.95309 * 6 5 4 8 8 C 1.38213 * 120.00012 * 0.07070 * 7 6 5 9 9 S 1.76201 * 119.99653 * 179.97438 * 8 7 6 10 10 O 1.42102 * 106.40486 * 23.49505 * 9 8 7 11 11 O 1.42109 * 106.40049 * 156.41501 * 9 8 7 12 12 N 1.65599 * 107.21896 * 269.95266 * 9 8 7 13 13 C 1.36940 * 120.00120 * 90.00142 * 12 9 8 14 14 H 1.08002 * 119.99830 * 326.59758 * 13 12 9 15 15 C 1.38810 * 120.00077 * 146.59593 * 13 12 9 16 16 N 1.31620 * 120.00086 * 336.20573 * 15 13 12 17 17 Si 1.86795 * 120.00027 * 156.20602 * 15 13 12 18 18 H 1.48503 * 109.46961 * 59.99986 * 17 15 13 19 19 H 1.48497 * 109.47350 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46981 * 300.00049 * 17 15 13 21 21 C 1.46498 * 119.99992 * 270.00523 * 12 9 8 22 22 C 1.50697 * 109.47452 * 96.18171 * 21 12 9 23 23 O 1.20827 * 120.00166 * 0.02562 * 22 21 12 24 24 O 1.34235 * 120.00372 * 179.97438 * 22 21 12 25 25 C 1.38217 * 119.99872 * 89.99862 * 4 3 2 26 26 H 1.09001 * 109.47028 * 300.00030 * 1 2 3 27 27 H 1.09000 * 109.47068 * 60.00540 * 1 2 3 28 28 H 1.09001 * 109.47237 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47288 * 59.99336 * 3 2 1 30 30 H 1.09007 * 109.46927 * 299.99692 * 3 2 1 31 31 H 1.07994 * 119.99921 * 359.97438 * 5 4 3 32 32 H 1.08000 * 119.99665 * 179.97438 * 6 5 4 33 33 H 1.08001 * 119.99971 * 180.02562 * 7 6 5 34 34 H 0.97002 * 119.99999 * 180.02562 * 16 15 13 35 35 H 1.09009 * 109.46960 * 216.18056 * 21 12 9 36 36 H 1.08997 * 109.47424 * 336.17666 * 21 12 9 37 37 H 0.96700 * 116.99833 * 179.97438 * 24 22 21 38 38 H 1.07999 * 120.00424 * 359.71827 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2011 1.1318 1.1982 6 6 5.5790 1.0233 1.1988 7 6 6.2685 0.9685 0.0017 8 6 5.5802 1.0237 -1.1955 9 16 6.4592 0.9545 -2.7210 10 8 7.6953 0.3110 -2.4431 11 8 5.5379 0.4810 -3.6939 12 7 6.8279 2.5121 -3.1454 13 6 8.0040 3.0756 -2.7275 14 1 8.4207 2.8064 -1.7682 15 6 8.6604 3.9926 -3.5368 16 7 8.4566 3.9871 -4.8371 17 14 9.8331 5.2344 -2.7805 18 1 10.9325 4.5176 -2.0856 19 1 10.4014 6.0937 -3.8499 20 1 9.0981 6.0787 -1.8046 21 6 5.8959 3.2874 -3.9679 22 6 5.0317 4.1425 -3.0775 23 8 5.1794 4.1083 -1.8788 24 8 4.0984 4.9430 -3.6160 25 6 4.2019 1.1318 -1.1961 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6885 1.8464 0.8899 30 1 1.6886 1.8464 -0.8901 31 1 3.6624 1.1747 2.1333 32 1 6.1169 0.9809 2.1343 33 1 7.3452 0.8832 0.0022 34 1 8.9156 4.6277 -5.4027 35 1 6.4577 3.9254 -4.6503 36 1 5.2658 2.6079 -4.5417 37 1 3.5682 5.4724 -3.0046 38 1 3.6637 1.1696 -2.1316 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737835485.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:50 Heat of formation + Delta-G solvation = -164.189978 kcal Electronic energy + Delta-G solvation = -27150.742699 eV Core-core repulsion = 23086.421695 eV Total energy + Delta-G solvation = -4064.321005 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.43588 -39.25215 -37.54665 -36.29961 -35.92898 -34.98731 -34.83907 -31.99759 -31.50122 -30.92644 -27.68988 -27.35260 -25.36639 -24.25952 -22.93468 -21.56022 -21.03281 -18.64154 -17.77645 -17.39959 -16.89631 -16.64978 -16.47781 -16.09353 -15.79166 -15.43865 -15.07807 -14.99294 -14.83701 -14.59708 -14.17630 -13.76594 -13.33532 -12.73138 -12.62689 -12.57769 -12.40055 -11.92205 -11.85688 -11.58033 -11.55612 -11.30009 -11.17630 -10.98265 -10.94203 -10.90097 -10.84566 -10.58466 -10.34268 -10.19233 -9.85720 -9.81072 -9.27871 -8.96868 -8.68098 -7.94246 -6.38881 -4.07732 1.09161 1.42761 1.50634 3.01763 3.19683 3.24935 3.29787 3.46043 3.64216 4.03664 4.17098 4.41149 4.62396 4.77252 4.84806 4.99229 5.12861 5.12898 5.14224 5.23970 5.29045 5.37472 5.47652 5.52044 5.75915 5.98000 6.00731 6.03905 6.17333 6.44244 6.48538 6.57253 6.64587 6.98041 7.04800 7.10642 7.15993 7.54485 8.25195 8.66345 8.83685 9.23393 10.65503 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.015534 B = 0.004863 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.071201 B = 5756.883325 C = 6129.137404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.107 3.893 4 C -0.119 4.119 5 C -0.055 4.055 6 C -0.146 4.146 7 C -0.005 4.005 8 C -0.650 4.650 9 S 2.656 3.344 10 O -0.958 6.958 11 O -0.991 6.991 12 N -0.823 5.823 13 C -0.291 4.291 14 H 0.095 0.905 15 C 0.039 3.961 16 N -0.865 5.865 17 Si 0.917 3.083 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.274 1.274 21 C 0.118 3.882 22 C 0.448 3.552 23 O -0.504 6.504 24 O -0.528 6.528 25 C 0.005 3.995 26 H 0.039 0.961 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.140 0.860 34 H 0.271 0.729 35 H 0.158 0.842 36 H 0.106 0.894 37 H 0.392 0.608 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.989 -0.483 7.665 14.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.031 3.969 4 C -0.120 4.120 5 C -0.073 4.073 6 C -0.165 4.165 7 C -0.024 4.024 8 C -0.734 4.734 9 S 2.751 3.249 10 O -0.948 6.948 11 O -0.980 6.980 12 N -0.653 5.653 13 C -0.424 4.424 14 H 0.113 0.887 15 C -0.167 4.167 16 N -0.504 5.504 17 Si 0.743 3.257 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.200 1.200 21 C -0.011 4.011 22 C 0.288 3.712 23 O -0.390 6.390 24 O -0.339 6.339 25 C -0.014 4.014 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.104 0.896 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.157 0.843 34 H 0.082 0.918 35 H 0.174 0.826 36 H 0.124 0.876 37 H 0.249 0.751 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.363 -1.660 7.147 13.526 hybrid contribution -0.409 1.760 1.462 2.325 sum -11.771 0.101 8.610 14.584 Atomic orbital electron populations 1.22753 0.81180 1.02775 0.99934 1.87995 1.19463 1.27633 1.95386 1.21312 0.89818 0.84905 1.00913 1.19518 0.93822 1.04918 0.93763 1.21145 0.94452 0.94594 0.97126 1.21178 0.94228 1.02862 0.98209 1.20949 1.00312 0.90081 0.91062 1.31321 1.05859 1.14661 1.21590 1.03605 0.73097 0.74450 0.73765 1.93481 1.42160 1.73706 1.85427 1.93451 1.66435 1.80360 1.57791 1.52349 1.23702 1.25733 1.63517 1.19007 0.97882 1.23839 1.01654 0.88724 1.25274 0.97086 0.99911 0.94444 1.69855 1.42365 1.35427 1.02793 0.86151 0.80194 0.80532 0.78830 1.19462 1.20845 1.19986 1.21068 0.90665 0.96262 0.93141 1.25399 0.77764 0.78423 0.89643 1.90654 1.66724 1.64702 1.16906 1.84639 1.48282 1.55127 1.45857 1.20631 0.92258 0.90522 0.97994 0.94193 0.93934 0.89597 0.92428 0.92281 0.85924 0.85376 0.84264 0.91841 0.82550 0.87611 0.75103 0.85231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -5.23 10.69 -35.23 -0.38 -5.61 16 3 C 0.11 1.38 6.06 36.00 0.22 1.60 16 4 C -0.12 -1.91 5.51 -104.62 -0.58 -2.48 16 5 C -0.05 -0.80 9.70 -39.58 -0.38 -1.19 16 6 C -0.15 -2.23 10.05 -39.58 -0.40 -2.63 16 7 C 0.00 -0.09 9.52 -39.59 -0.38 -0.47 16 8 C -0.65 -13.08 5.80 -39.59 -0.23 -13.31 16 9 S 2.66 61.06 5.65 -107.50 -0.61 60.45 16 10 O -0.96 -24.12 16.50 -57.17 -0.94 -25.06 16 11 O -0.99 -23.35 15.82 -57.17 -0.90 -24.25 16 12 N -0.82 -19.73 2.39 -61.09 -0.15 -19.87 16 13 C -0.29 -7.44 8.71 -15.06 -0.13 -7.57 16 14 H 0.10 2.38 7.93 -52.49 -0.42 1.96 16 15 C 0.04 0.98 4.99 -17.43 -0.09 0.90 16 16 N -0.87 -22.14 11.26 55.49 0.62 -21.51 16 17 Si 0.92 19.94 29.62 -169.99 -5.03 14.90 16 18 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 C 0.12 2.59 5.89 -5.20 -0.03 2.56 16 22 C 0.45 8.92 8.36 36.00 0.30 9.22 16 23 O -0.50 -10.94 16.81 -18.75 -0.32 -11.26 16 24 O -0.53 -8.40 13.42 -39.27 -0.53 -8.92 16 25 C 0.01 0.10 9.11 -39.58 -0.36 -0.26 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 30 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 31 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.14 2.46 7.62 -52.49 -0.40 2.06 16 34 H 0.27 6.54 8.31 -40.82 -0.34 6.21 16 35 H 0.16 3.64 5.31 -51.92 -0.28 3.36 16 36 H 0.11 2.13 6.89 -51.93 -0.36 1.78 16 37 H 0.39 4.35 9.10 45.56 0.41 4.77 16 38 H 0.13 2.31 7.61 -52.49 -0.40 1.91 16 LS Contribution 347.68 15.07 5.24 5.24 Total: -1.00 -32.66 347.68 -7.46 -40.12 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -3.52 Total: 8.02 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -0.94 Total: -12.24 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.48 Total: -41.39 kcal Atomic # 8 Polarization: -72.04 SS G_CDS: -3.07 Total: -75.10 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.90 kcal Atomic # 16 Polarization: 61.06 SS G_CDS: -0.61 Total: 60.45 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.66 -7.46 -40.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737835485.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.071 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds