Wall clock time and date at job start Tue Mar 31 2020 05:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35901 * 116.99723 * 2 1 4 4 C 1.38755 * 120.05324 * 0.02562 * 3 2 1 5 5 C 1.38129 * 119.94454 * 180.02562 * 4 3 2 6 6 C 1.38286 * 120.05172 * 359.97438 * 5 4 3 7 7 S 1.76203 * 119.94107 * 180.02562 * 6 5 4 8 8 O 1.42100 * 106.40058 * 203.53735 * 7 6 5 9 9 O 1.42099 * 106.40189 * 336.45911 * 7 6 5 10 10 N 1.65601 * 107.21907 * 89.99819 * 7 6 5 11 11 C 1.36938 * 120.00126 * 89.99661 * 10 7 6 12 12 H 1.08006 * 120.00064 * 326.59692 * 11 10 7 13 13 C 1.38808 * 120.00346 * 146.59375 * 11 10 7 14 14 N 1.31625 * 119.99675 * 336.21295 * 13 11 10 15 15 Si 1.86800 * 120.00293 * 156.20379 * 13 11 10 16 16 H 1.48504 * 109.46867 * 90.00576 * 15 13 11 17 17 H 1.48504 * 109.47462 * 210.00303 * 15 13 11 18 18 H 1.48496 * 109.47137 * 330.00804 * 15 13 11 19 19 C 1.46502 * 120.00361 * 270.00082 * 10 7 6 20 20 C 1.50694 * 109.47050 * 96.17626 * 19 10 7 21 21 O 1.20829 * 120.00620 * 0.02562 * 20 19 10 22 22 O 1.34231 * 119.99931 * 180.02562 * 20 19 10 23 23 C 1.38240 * 120.11592 * 0.04058 * 6 5 4 24 24 C 1.38173 * 120.05209 * 359.68544 * 23 6 5 25 25 C 1.50701 * 120.02717 * 180.29267 * 24 23 6 26 26 H 1.09007 * 109.46538 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47245 * 299.99000 * 1 2 3 28 28 H 1.08989 * 109.47726 * 59.99738 * 1 2 3 29 29 H 1.07998 * 120.03206 * 0.02562 * 4 3 2 30 30 H 1.07991 * 119.97297 * 179.97438 * 5 4 3 31 31 H 0.97003 * 119.99517 * 179.97438 * 14 13 11 32 32 H 1.08993 * 109.47313 * 216.18418 * 19 10 7 33 33 H 1.09005 * 109.46681 * 336.18387 * 19 10 7 34 34 H 0.96700 * 117.00088 * 180.02562 * 22 20 19 35 35 H 1.07994 * 119.97889 * 179.97438 * 23 6 5 36 36 H 1.08992 * 109.47532 * 270.27653 * 25 24 23 37 37 H 1.09007 * 109.47011 * 30.27916 * 25 24 23 38 38 H 1.09004 * 109.47244 * 150.27331 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9206 3.6049 0.0000 6 6 3.3017 3.6759 -0.0005 7 16 4.1015 5.2460 -0.0005 8 8 5.3970 5.0363 -0.5455 9 8 3.1699 6.1709 -0.5444 10 7 4.3246 5.6825 1.5812 11 6 5.4735 5.3246 2.2348 12 1 5.9601 4.3897 1.9989 13 6 6.0128 6.1634 3.2004 14 7 5.7415 7.4512 3.1793 15 14 7.1233 5.4645 4.5300 16 1 8.5337 5.5010 4.0666 17 1 6.9872 6.2764 5.7660 18 1 6.7319 4.0606 4.8144 19 6 3.2928 6.4515 2.2815 20 6 2.4128 5.5130 3.0662 21 8 2.6257 4.3239 3.0433 22 8 1.3921 5.9981 3.7906 23 6 4.0558 2.5174 -0.0014 24 6 3.4310 1.2850 0.0049 25 6 4.2537 0.0224 0.0106 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8898 29 1 0.2127 2.3203 0.0014 30 1 1.3337 4.5114 0.0000 31 1 6.1181 8.0372 3.8543 32 1 3.7662 7.1596 2.9615 33 1 2.6882 6.9942 1.5548 34 1 0.8558 5.3575 4.2774 35 1 5.1342 2.5754 -0.0022 36 1 4.4558 -0.2843 -1.0156 37 1 5.1959 0.2050 0.5275 38 1 3.7046 -0.7668 0.5243 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738057561.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:38 Heat of formation + Delta-G solvation = -160.917638 kcal Electronic energy + Delta-G solvation = -27365.917639 eV Core-core repulsion = 23301.738533 eV Total energy + Delta-G solvation = -4064.179105 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.16682 -39.39903 -37.36903 -36.28157 -35.90540 -34.96497 -34.81420 -32.73892 -31.47612 -30.18448 -27.72832 -27.65784 -26.59860 -24.23347 -22.41431 -21.72855 -20.99165 -18.62657 -18.01576 -17.52992 -17.36911 -16.63710 -16.51041 -16.28965 -15.87161 -15.46006 -14.89295 -14.67938 -14.46399 -14.39196 -13.86744 -13.48316 -13.35976 -13.01659 -12.95178 -12.51203 -12.17250 -12.11540 -11.89903 -11.81563 -11.54106 -11.27979 -11.23529 -11.14403 -10.97157 -10.88768 -10.80136 -10.78513 -10.55992 -10.31926 -10.20387 -9.81754 -9.21973 -8.69585 -8.23336 -7.90364 -6.36981 -4.05236 1.15921 1.48169 1.52194 3.03917 3.16859 3.18618 3.26761 3.34089 3.57636 3.74560 4.17771 4.43730 4.65351 4.75404 4.84882 4.95400 4.99349 5.02236 5.25241 5.28054 5.46078 5.48969 5.63066 5.77597 5.79490 5.99227 6.01735 6.06736 6.19117 6.36119 6.40505 6.50326 6.66841 6.87130 7.07088 7.18198 7.35370 7.56597 8.27523 8.68566 8.86060 9.25852 10.67434 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.013546 B = 0.005228 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.547806 B = 5354.258642 C = 5561.994346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.314 6.314 3 C 0.166 3.834 4 C -0.226 4.226 5 C 0.017 3.983 6 C -0.679 4.679 7 S 2.661 3.339 8 O -0.959 6.959 9 O -0.993 6.993 10 N -0.824 5.824 11 C -0.289 4.289 12 H 0.095 0.905 13 C 0.038 3.962 14 N -0.866 5.866 15 Si 0.914 3.086 16 H -0.275 1.275 17 H -0.282 1.282 18 H -0.269 1.269 19 C 0.119 3.881 20 C 0.447 3.553 21 O -0.503 6.503 22 O -0.529 6.529 23 C 0.023 3.977 24 C -0.140 4.140 25 C -0.102 4.102 26 H 0.099 0.901 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.270 0.730 32 H 0.158 0.842 33 H 0.106 0.894 34 H 0.392 0.608 35 H 0.145 0.855 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.905 -9.403 -1.983 13.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.227 6.227 3 C 0.120 3.880 4 C -0.246 4.246 5 C -0.003 4.003 6 C -0.764 4.764 7 S 2.756 3.244 8 O -0.950 6.950 9 O -0.983 6.983 10 N -0.654 5.654 11 C -0.422 4.422 12 H 0.112 0.888 13 C -0.167 4.167 14 N -0.505 5.505 15 Si 0.740 3.260 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.194 1.194 19 C -0.011 4.011 20 C 0.287 3.713 21 O -0.389 6.389 22 O -0.340 6.340 23 C 0.004 3.996 24 C -0.142 4.142 25 C -0.158 4.158 26 H 0.117 0.883 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.081 0.919 32 H 0.174 0.826 33 H 0.123 0.877 34 H 0.249 0.751 35 H 0.162 0.838 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.263 -9.066 -2.945 13.292 hybrid contribution -0.618 -1.215 1.528 2.048 sum -9.882 -10.281 -1.417 14.330 Atomic orbital electron populations 1.23070 0.78513 1.03777 1.01572 1.86056 1.21315 1.27114 1.88180 1.18963 0.91915 0.83897 0.93222 1.21159 0.99722 0.92381 1.11290 1.20526 0.92611 0.97541 0.89586 1.31153 1.04667 1.22582 1.17977 1.03387 0.73088 0.73697 0.74252 1.93475 1.38097 1.86150 1.77233 1.93439 1.65919 1.60490 1.78468 1.52360 1.21704 1.66499 1.24802 1.19017 1.00717 1.03257 1.19210 0.88756 1.25262 0.97144 0.94222 1.00116 1.69867 1.44079 1.02282 1.34294 0.86131 0.80184 0.79367 0.80280 1.20025 1.20762 1.19386 1.21058 0.88119 0.93462 0.98469 1.25414 0.78290 0.90166 0.77432 1.90664 1.68953 1.17880 1.61394 1.84638 1.42955 1.45883 1.60484 1.20628 1.00025 0.89710 0.89205 1.19287 0.90566 0.96318 1.07996 1.20585 0.99029 0.94126 1.02097 0.88295 0.92512 0.92560 0.85306 0.85001 0.91949 0.82593 0.87651 0.75125 0.83768 0.91559 0.91254 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.24 9.54 -19.43 -0.19 -4.42 16 3 C 0.17 2.64 6.66 -39.22 -0.26 2.38 16 4 C -0.23 -3.53 9.04 -39.43 -0.36 -3.89 16 5 C 0.02 0.30 9.44 -39.60 -0.37 -0.07 16 6 C -0.68 -13.62 5.80 -39.56 -0.23 -13.85 16 7 S 2.66 60.81 5.65 -107.50 -0.61 60.21 16 8 O -0.96 -24.05 16.49 -57.17 -0.94 -25.00 16 9 O -0.99 -23.10 15.82 -57.17 -0.90 -24.00 16 10 N -0.82 -19.78 2.39 -61.09 -0.15 -19.93 16 11 C -0.29 -7.43 8.71 -15.06 -0.13 -7.56 16 12 H 0.09 2.39 7.94 -52.48 -0.42 1.97 16 13 C 0.04 0.97 4.99 -17.43 -0.09 0.89 16 14 N -0.87 -22.25 11.26 55.49 0.62 -21.63 16 15 Si 0.91 20.06 29.62 -169.99 -5.03 15.03 16 16 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 19 C 0.12 2.60 5.89 -5.20 -0.03 2.57 16 20 C 0.45 8.98 8.36 36.00 0.30 9.28 16 21 O -0.50 -11.08 16.81 -18.75 -0.32 -11.40 16 22 O -0.53 -8.50 13.42 -39.26 -0.53 -9.03 16 23 C 0.02 0.44 9.17 -39.60 -0.36 0.08 16 24 C -0.14 -2.35 5.89 -104.47 -0.62 -2.97 16 25 C -0.10 -1.37 9.79 36.01 0.35 -1.02 16 26 H 0.10 0.65 8.14 -51.92 -0.42 0.22 16 27 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 28 H 0.06 0.46 7.66 -51.94 -0.40 0.06 16 29 H 0.13 1.58 6.30 -52.49 -0.33 1.25 16 30 H 0.13 2.20 7.61 -52.49 -0.40 1.80 16 31 H 0.27 6.53 8.31 -40.82 -0.34 6.20 16 32 H 0.16 3.64 5.31 -51.93 -0.28 3.37 16 33 H 0.11 2.12 6.89 -51.93 -0.36 1.76 16 34 H 0.39 4.44 9.10 45.56 0.41 4.86 16 35 H 0.14 2.62 7.61 -52.49 -0.40 2.22 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 38 H 0.07 0.87 7.53 -51.93 -0.39 0.48 16 LS Contribution 342.17 15.07 5.16 5.16 Total: -1.00 -32.61 342.17 -7.04 -39.64 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -3.35 Total: 8.32 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -0.80 Total: -12.95 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: 0.48 Total: -41.56 kcal Atomic # 8 Polarization: -70.97 SS G_CDS: -2.87 Total: -73.85 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.03 kcal Atomic # 16 Polarization: 60.81 SS G_CDS: -0.61 Total: 60.21 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.61 -7.04 -39.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738057561.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.274 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds