Wall clock time and date at job start Tue Mar 31 2020 05:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99952 * 2 1 4 4 H 1.48502 * 109.47205 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47250 * 299.99572 * 3 2 1 6 6 H 1.48502 * 109.47212 * 59.99465 * 3 2 1 7 7 C 1.37881 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99931 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46962 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47056 * 179.97438 * 10 9 7 12 12 O 1.42102 * 110.54050 * 68.38067 * 11 10 9 13 13 O 1.42097 * 110.54728 * 291.62691 * 11 10 9 14 14 O 1.52206 * 104.45132 * 180.02562 * 11 10 9 15 15 C 1.35984 * 113.99549 * 75.00059 * 14 11 10 16 16 C 1.38698 * 120.00092 * 269.72849 * 15 14 11 17 17 C 1.38129 * 119.99798 * 179.77031 * 16 15 14 18 18 C 1.38698 * 120.00358 * 0.50456 * 17 16 15 19 19 O 1.35982 * 120.00479 * 179.72690 * 18 17 16 20 20 C 1.42899 * 116.99642 * 0.02562 * 19 18 17 21 21 C 1.50706 * 109.46898 * 180.02562 * 20 19 18 22 22 N 1.34776 * 119.99895 * 180.02562 * 21 20 19 23 23 O 1.21287 * 119.99708 * 359.97438 * 21 20 19 24 24 C 1.38703 * 119.99793 * 359.74769 * 18 17 16 25 25 C 1.38136 * 119.99619 * 0.02562 * 24 18 17 26 26 H 0.97002 * 120.00095 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47347 * 59.99565 * 9 7 2 28 28 H 1.09006 * 109.46825 * 299.99329 * 9 7 2 29 29 H 1.09006 * 109.47227 * 59.99931 * 10 9 7 30 30 H 1.09000 * 109.47376 * 300.00107 * 10 9 7 31 31 H 1.07999 * 120.00281 * 359.97438 * 16 15 14 32 32 H 1.08001 * 120.00373 * 180.23196 * 17 16 15 33 33 H 1.09001 * 109.47055 * 299.99748 * 20 19 18 34 34 H 1.08993 * 109.47235 * 60.00403 * 20 19 18 35 35 H 0.96995 * 120.00200 * 359.97438 * 22 21 20 36 36 H 0.97004 * 119.99833 * 179.97438 * 22 21 20 37 37 H 1.07992 * 120.00233 * 179.97438 * 24 18 17 38 38 H 1.07998 * 119.99591 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3383 -5.2330 0.0013 12 8 0.6640 -5.4200 -1.2355 13 8 0.6647 -5.4194 1.2385 14 8 2.4249 -6.2989 0.0019 15 6 3.0447 -6.4560 1.2020 16 6 4.1766 -5.7122 1.5006 17 6 4.8035 -5.8684 2.7215 18 6 4.3071 -6.7766 3.6448 19 8 4.9275 -6.9344 4.8445 20 6 6.0846 -6.1318 5.0870 21 6 6.6330 -6.4418 6.4561 22 7 7.7303 -5.7998 6.9037 23 8 6.0864 -7.2683 7.1554 24 6 3.1782 -7.5243 3.3441 25 6 2.5487 -7.3647 2.1250 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8904 29 1 2.8720 -3.6043 0.8905 30 1 2.8720 -3.6043 -0.8894 31 1 4.5660 -5.0085 0.7798 32 1 5.6827 -5.2865 2.9555 33 1 6.8424 -6.3501 4.3345 34 1 5.8131 -5.0776 5.0341 35 1 8.1672 -5.1385 6.3445 36 1 8.0830 -5.9990 7.7851 37 1 2.7920 -8.2318 4.0628 38 1 1.6699 -7.9472 1.8908 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739980654.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:15 Heat of formation + Delta-G solvation = -156.087585 kcal Electronic energy + Delta-G solvation = -25409.191155 eV Core-core repulsion = 21345.221496 eV Total energy + Delta-G solvation = -4063.969658 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.18432 -40.31920 -39.17241 -36.89952 -36.65489 -35.62517 -34.24846 -33.97565 -31.68002 -31.14843 -30.09709 -28.38730 -25.75660 -23.53027 -23.35389 -21.73989 -21.30491 -20.21284 -18.85206 -18.24129 -18.08680 -17.46067 -17.05260 -16.79707 -16.73923 -16.38747 -15.66416 -15.13955 -14.77132 -14.70619 -14.58881 -14.49289 -13.88140 -13.66290 -13.42836 -13.22848 -12.86841 -12.60160 -12.49508 -12.25540 -11.83084 -11.72312 -11.65931 -11.29712 -11.15457 -11.12968 -11.00866 -10.45505 -10.44542 -10.43713 -10.26077 -9.78369 -9.37935 -9.23537 -8.54855 -8.47364 -6.16501 -4.22296 0.37462 0.96300 1.15104 2.05431 2.19501 2.50524 3.21572 3.28738 3.31442 3.31553 3.34652 4.06786 4.17922 4.32744 4.38013 4.39292 4.49144 4.50254 4.54579 4.75719 5.03681 5.06891 5.18803 5.32040 5.56062 5.60523 5.62808 5.86151 5.97698 6.05354 6.19273 6.38727 6.41518 6.68540 6.94216 7.25154 7.31230 7.68850 7.76042 8.12572 8.80911 9.42507 10.94582 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.010510 B = 0.003411 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.518408 B = 8207.593829 C =10356.002561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.521 4.521 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.613 4.613 11 S 2.574 3.426 12 O -0.937 6.937 13 O -0.959 6.959 14 O -0.671 6.671 15 C 0.041 3.959 16 C -0.085 4.085 17 C -0.193 4.193 18 C 0.139 3.861 19 O -0.285 6.285 20 C 0.034 3.966 21 C 0.521 3.479 22 N -0.851 5.851 23 O -0.518 6.518 24 C -0.129 4.129 25 C -0.051 4.051 26 H 0.265 0.735 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.148 0.852 32 H 0.142 0.858 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.404 0.596 36 H 0.409 0.591 37 H 0.147 0.853 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.915 -12.088 9.287 22.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.008 4.008 10 C -0.744 4.744 11 S 2.674 3.326 12 O -0.936 6.936 13 O -0.958 6.958 14 O -0.630 6.630 15 C -0.001 4.001 16 C -0.105 4.105 17 C -0.212 4.212 18 C 0.093 3.907 19 O -0.197 6.197 20 C -0.044 4.044 21 C 0.304 3.696 22 N -0.417 5.417 23 O -0.392 6.392 24 C -0.148 4.148 25 C -0.071 4.071 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.139 0.861 30 H 0.143 0.857 31 H 0.166 0.834 32 H 0.160 0.840 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.233 0.767 36 H 0.241 0.759 37 H 0.165 0.835 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 15.688 -13.311 9.553 22.684 hybrid contribution 1.291 2.059 -0.264 2.444 sum 16.979 -11.252 9.289 22.387 Atomic orbital electron populations 1.69961 1.06112 1.27143 1.49481 1.25072 0.94976 0.99553 0.94897 0.86412 0.79844 0.83190 0.77801 1.19692 1.20764 1.20805 1.21021 0.93055 0.89705 1.52220 0.91992 1.18950 0.92524 0.90292 0.99066 1.30716 1.14273 1.19069 1.10306 1.06109 0.75192 0.76807 0.74515 1.93586 1.70345 1.84481 1.45157 1.93588 1.72660 1.83780 1.45741 1.85776 1.64989 1.71794 1.40430 1.17900 0.96523 1.02991 0.82648 1.21207 0.93604 0.98425 0.97261 1.21059 1.03546 1.02237 0.94358 1.19088 0.92667 0.94601 0.84369 1.86182 1.40394 1.60600 1.32574 1.22529 0.88847 0.97127 0.95946 1.20035 0.80570 0.81136 0.87869 1.43651 1.30618 1.45035 1.22434 1.90827 1.58203 1.32506 1.57623 1.20305 0.94890 1.02236 0.97370 1.21131 0.98784 0.95696 0.91463 0.92528 0.94679 0.94634 0.86059 0.85652 0.83427 0.84000 0.88427 0.88138 0.76727 0.75904 0.83482 0.83438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 20.69 29.54 -169.99 -5.02 15.66 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.03 9.11 -34.44 -0.31 -14.34 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.76 4.98 -27.88 -0.14 0.62 16 10 C -0.61 -11.55 5.41 37.16 0.20 -11.35 16 11 S 2.57 48.06 5.17 -107.50 -0.56 47.50 16 12 O -0.94 -20.44 18.09 -67.03 -1.21 -21.65 16 13 O -0.96 -19.47 16.26 -67.04 -1.09 -20.56 16 14 O -0.67 -10.64 10.05 -52.02 -0.52 -11.17 16 15 C 0.04 0.58 4.79 -39.24 -0.19 0.39 16 16 C -0.08 -0.98 8.46 -39.45 -0.33 -1.32 16 17 C -0.19 -1.86 9.03 -39.45 -0.36 -2.22 16 18 C 0.14 1.52 6.69 -39.24 -0.26 1.26 16 19 O -0.29 -3.06 9.67 -39.59 -0.38 -3.45 16 20 C 0.03 0.22 5.22 36.01 0.19 0.41 16 21 C 0.52 4.15 8.18 -10.98 -0.09 4.06 16 22 N -0.85 -2.90 8.87 31.22 0.28 -2.62 16 23 O -0.52 -6.91 17.34 -14.36 -0.25 -7.16 16 24 C -0.13 -1.49 9.98 -39.45 -0.39 -1.88 16 25 C -0.05 -0.66 9.04 -39.45 -0.36 -1.02 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.12 2.00 6.62 -51.92 -0.34 1.65 16 30 H 0.13 2.09 8.14 -51.92 -0.42 1.67 16 31 H 0.15 1.41 7.52 -52.49 -0.39 1.02 16 32 H 0.14 0.84 6.29 -52.49 -0.33 0.51 16 33 H 0.10 0.34 7.66 -51.93 -0.40 -0.06 16 34 H 0.10 0.44 7.66 -51.93 -0.40 0.05 16 35 H 0.40 0.04 8.83 -40.82 -0.36 -0.32 16 36 H 0.41 1.13 8.93 -40.82 -0.36 0.77 16 37 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 346.05 15.07 5.21 5.21 Total: -1.00 -39.21 346.05 -9.19 -48.40 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -4.24 Total: -0.99 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -2.14 Total: -23.89 kcal Atomic # 7 Polarization: -28.94 SS G_CDS: 1.01 Total: -27.93 kcal Atomic # 8 Polarization: -60.52 SS G_CDS: -3.46 Total: -63.98 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 48.06 SS G_CDS: -0.56 Total: 47.50 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -39.21 -9.19 -48.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739980654.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.684 kcal (2) G-P(sol) polarization free energy of solvation -39.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds