Wall clock time and date at job start Tue Mar 31 2020 05:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99952 * 2 1 4 4 H 1.48502 * 109.47205 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47250 * 299.99572 * 3 2 1 6 6 H 1.48502 * 109.47212 * 59.99465 * 3 2 1 7 7 C 1.37881 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99931 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46962 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47056 * 179.97438 * 10 9 7 12 12 O 1.42102 * 110.54050 * 68.38067 * 11 10 9 13 13 O 1.42097 * 110.54728 * 291.62691 * 11 10 9 14 14 O 1.52206 * 104.45132 * 180.02562 * 11 10 9 15 15 C 1.35984 * 113.99549 * 75.00059 * 14 11 10 16 16 C 1.38698 * 120.00092 * 269.72849 * 15 14 11 17 17 C 1.38129 * 119.99798 * 179.77031 * 16 15 14 18 18 C 1.38698 * 120.00358 * 0.50456 * 17 16 15 19 19 O 1.35982 * 120.00479 * 179.72690 * 18 17 16 20 20 C 1.42899 * 116.99642 * 0.02562 * 19 18 17 21 21 C 1.50706 * 109.46898 * 180.02562 * 20 19 18 22 22 N 1.34776 * 119.99895 * 180.02562 * 21 20 19 23 23 O 1.21287 * 119.99708 * 359.97438 * 21 20 19 24 24 C 1.38703 * 119.99793 * 359.74769 * 18 17 16 25 25 C 1.38136 * 119.99619 * 0.02562 * 24 18 17 26 26 H 0.97002 * 120.00095 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47347 * 59.99565 * 9 7 2 28 28 H 1.09006 * 109.46825 * 299.99329 * 9 7 2 29 29 H 1.09006 * 109.47227 * 59.99931 * 10 9 7 30 30 H 1.09000 * 109.47376 * 300.00107 * 10 9 7 31 31 H 1.07999 * 120.00281 * 359.97438 * 16 15 14 32 32 H 1.08001 * 120.00373 * 180.23196 * 17 16 15 33 33 H 1.09001 * 109.47055 * 299.99748 * 20 19 18 34 34 H 1.08993 * 109.47235 * 60.00403 * 20 19 18 35 35 H 0.96995 * 120.00200 * 359.97438 * 22 21 20 36 36 H 0.97004 * 119.99833 * 179.97438 * 22 21 20 37 37 H 1.07992 * 120.00233 * 179.97438 * 24 18 17 38 38 H 1.07998 * 119.99591 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3383 -5.2330 0.0013 12 8 0.6640 -5.4200 -1.2355 13 8 0.6647 -5.4194 1.2385 14 8 2.4249 -6.2989 0.0019 15 6 3.0447 -6.4560 1.2020 16 6 4.1766 -5.7122 1.5006 17 6 4.8035 -5.8684 2.7215 18 6 4.3071 -6.7766 3.6448 19 8 4.9275 -6.9344 4.8445 20 6 6.0846 -6.1318 5.0870 21 6 6.6330 -6.4418 6.4561 22 7 7.7303 -5.7998 6.9037 23 8 6.0864 -7.2683 7.1554 24 6 3.1782 -7.5243 3.3441 25 6 2.5487 -7.3647 2.1250 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8904 29 1 2.8720 -3.6043 0.8905 30 1 2.8720 -3.6043 -0.8894 31 1 4.5660 -5.0085 0.7798 32 1 5.6827 -5.2865 2.9555 33 1 6.8424 -6.3501 4.3345 34 1 5.8131 -5.0776 5.0341 35 1 8.1672 -5.1385 6.3445 36 1 8.0830 -5.9990 7.7851 37 1 2.7920 -8.2318 4.0628 38 1 1.6699 -7.9472 1.8908 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739980654.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:15 Heat of formation + Delta-G solvation = -187.626090 kcal Electronic energy + Delta-G solvation = -25410.558767 eV Core-core repulsion = 21345.221496 eV Total energy + Delta-G solvation = -4065.337271 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.17779 -41.12431 -39.94060 -38.31271 -37.69525 -37.19217 -35.90719 -34.76975 -33.22662 -32.34665 -30.88214 -29.05627 -27.66748 -24.56892 -24.29911 -23.43495 -21.96583 -21.33846 -19.58074 -19.55271 -18.87652 -18.78988 -18.39246 -17.90062 -17.38425 -17.36539 -16.79375 -16.57021 -16.48059 -15.64496 -15.41634 -15.33016 -15.21735 -14.71818 -14.46773 -14.32963 -14.26132 -13.90343 -13.72949 -13.42347 -13.34900 -13.32183 -13.19433 -12.94259 -12.78252 -12.27753 -12.12807 -12.03619 -11.97673 -11.71009 -11.11536 -11.07261 -10.72704 -10.63413 -10.23438 -9.36939 -8.23407 -6.37351 -0.97843 0.10514 0.13306 1.19319 1.43950 1.44799 1.50347 1.57725 1.63123 2.39954 2.43943 2.62181 2.81913 2.99240 3.10841 3.58269 3.65736 3.77698 3.87694 3.97606 4.01110 4.11277 4.15905 4.23350 4.25028 4.50639 4.72326 4.84042 5.01933 5.07748 5.13970 5.27096 5.28666 5.47824 5.70700 5.83309 6.07370 6.15788 6.42218 6.76602 7.27507 7.32926 8.89209 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.010510 B = 0.003411 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.518408 B = 8207.593829 C =10356.002561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.975 3.025 4 H -0.250 1.250 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.082 0.918 9 C 0.022 3.978 10 C -0.605 4.605 11 S 2.594 3.406 12 O -0.978 6.978 13 O -0.983 6.983 14 O -0.659 6.659 15 C -0.004 4.004 16 C -0.085 4.085 17 C -0.182 4.182 18 C 0.146 3.854 19 O -0.308 6.308 20 C 0.023 3.977 21 C 0.517 3.483 22 N -0.826 5.826 23 O -0.585 6.585 24 C -0.142 4.142 25 C -0.065 4.065 26 H 0.266 0.734 27 H 0.006 0.994 28 H 0.010 0.990 29 H 0.151 0.849 30 H 0.151 0.849 31 H 0.172 0.828 32 H 0.189 0.811 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.424 0.576 36 H 0.414 0.586 37 H 0.156 0.844 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.866 -10.766 9.864 25.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.204 4.204 3 Si 0.799 3.201 4 H -0.174 1.174 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.574 4.574 8 H 0.100 0.900 9 C -0.016 4.016 10 C -0.735 4.735 11 S 2.695 3.305 12 O -0.977 6.977 13 O -0.981 6.981 14 O -0.619 6.619 15 C -0.045 4.045 16 C -0.105 4.105 17 C -0.201 4.201 18 C 0.099 3.901 19 O -0.220 6.220 20 C -0.054 4.054 21 C 0.301 3.699 22 N -0.393 5.393 23 O -0.464 6.464 24 C -0.161 4.161 25 C -0.085 4.085 26 H 0.075 0.925 27 H 0.024 0.976 28 H 0.028 0.972 29 H 0.169 0.831 30 H 0.169 0.831 31 H 0.189 0.811 32 H 0.206 0.794 33 H 0.154 0.846 34 H 0.147 0.853 35 H 0.256 0.744 36 H 0.246 0.754 37 H 0.174 0.826 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 19.693 -11.950 10.111 25.156 hybrid contribution 0.215 1.563 -0.290 1.604 sum 19.908 -10.387 9.821 24.509 Atomic orbital electron populations 1.70118 1.08192 1.28225 1.51028 1.26140 0.95819 1.03965 0.94468 0.85245 0.79403 0.77911 0.77557 1.17363 1.20812 1.20567 1.21552 0.94191 0.90394 1.51233 0.89988 1.18812 0.93445 0.92790 0.96567 1.30550 1.13367 1.16489 1.13096 1.05426 0.75158 0.76781 0.73140 1.93525 1.72124 1.85231 1.46784 1.93541 1.73793 1.84243 1.46532 1.85752 1.64347 1.70281 1.41471 1.18398 0.98251 1.05366 0.82531 1.21575 0.92485 0.98034 0.98408 1.21522 1.04255 1.01496 0.92802 1.19212 0.92116 0.94101 0.84710 1.86169 1.41885 1.61672 1.32278 1.22961 0.88459 0.98071 0.95911 1.20435 0.80901 0.80428 0.88144 1.43500 1.28980 1.44068 1.22734 1.90807 1.60476 1.35665 1.59451 1.20473 0.95622 1.02965 0.97019 1.21264 0.99188 0.96023 0.92068 0.92487 0.97575 0.97174 0.83084 0.83066 0.81050 0.79414 0.84565 0.85258 0.74412 0.75379 0.82616 0.83624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.94 13.29 21.45 0.28 -55.66 16 2 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 3 Si 0.98 41.57 29.54 68.60 2.03 43.59 16 4 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.53 -28.34 9.11 25.60 0.23 -28.10 16 8 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 9 C 0.02 1.14 4.98 29.85 0.15 1.29 16 10 C -0.60 -22.03 5.41 71.98 0.39 -21.64 16 11 S 2.59 97.81 5.17 -56.49 -0.29 97.52 16 12 O -0.98 -43.97 18.09 -118.57 -2.15 -46.12 16 13 O -0.98 -40.86 16.26 -118.57 -1.93 -42.79 16 14 O -0.66 -20.58 10.05 -62.47 -0.63 -21.21 16 15 C 0.00 -0.10 4.79 22.49 0.11 0.00 16 16 C -0.09 -1.68 8.46 22.35 0.19 -1.49 16 17 C -0.18 -2.72 9.03 22.35 0.20 -2.52 16 18 C 0.15 2.80 6.69 22.49 0.15 2.95 16 19 O -0.31 -5.84 9.67 -74.31 -0.72 -6.56 16 20 C 0.02 0.21 5.22 71.24 0.37 0.58 16 21 C 0.52 7.03 8.18 87.66 0.72 7.75 16 22 N -0.83 -3.10 8.87 -173.52 -1.54 -4.64 16 23 O -0.58 -15.39 17.34 15.99 0.28 -15.11 16 24 C -0.14 -3.16 9.98 22.36 0.22 -2.93 16 25 C -0.07 -1.69 9.04 22.35 0.20 -1.48 16 26 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 27 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.15 4.54 6.62 -2.39 -0.02 4.52 16 30 H 0.15 4.69 8.14 -2.39 -0.02 4.67 16 31 H 0.17 2.48 7.52 -2.91 -0.02 2.46 16 32 H 0.19 0.95 6.29 -2.91 -0.02 0.93 16 33 H 0.14 0.17 7.66 -2.39 -0.02 0.16 16 34 H 0.13 0.44 7.66 -2.39 -0.02 0.42 16 35 H 0.42 -1.70 8.83 -92.71 -0.82 -2.52 16 36 H 0.41 1.31 8.93 -92.71 -0.83 0.48 16 37 H 0.16 3.01 8.06 -2.91 -0.02 2.98 16 38 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -89.38 346.05 -1.78 -91.16 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -0.52 Total: 5.26 kcal Atomic # 6 Polarization: -48.85 SS G_CDS: 3.40 Total: -45.45 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -1.25 Total: -60.29 kcal Atomic # 8 Polarization: -126.65 SS G_CDS: -5.14 Total: -131.79 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 16 Polarization: 97.81 SS G_CDS: -0.29 Total: 97.52 kcal Total: -89.38 -1.78 -91.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739980654.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.466 kcal (2) G-P(sol) polarization free energy of solvation -89.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds