Wall clock time and date at job start Tue Mar 31 2020 05:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00043 * 2 1 4 4 H 1.48495 * 109.46971 * 269.99653 * 3 2 1 5 5 H 1.48507 * 109.46948 * 30.00004 * 3 2 1 6 6 H 1.48500 * 109.46860 * 149.99584 * 3 2 1 7 7 C 1.38707 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99980 * 0.02562 * 7 2 1 9 9 O 1.34808 * 119.99753 * 180.02562 * 7 2 1 10 10 C 1.35505 * 117.00005 * 185.05319 * 9 7 2 11 11 C 1.38833 * 120.16554 * 354.39310 * 10 9 7 12 12 C 1.38019 * 120.07810 * 179.97438 * 11 10 9 13 13 C 1.38589 * 120.41482 * 359.97438 * 12 11 10 14 14 C 1.37796 * 120.33448 * 359.97438 * 13 12 11 15 15 C 1.39734 * 119.91208 * 0.02562 * 14 13 12 16 16 C 1.47399 * 120.20356 * 179.97438 * 15 14 13 17 17 O 1.21508 * 119.99678 * 180.02562 * 16 15 14 18 18 O 1.34758 * 119.99862 * 0.02562 * 16 15 14 19 19 C 1.45202 * 116.99794 * 179.97438 * 18 16 15 20 20 C 1.52999 * 109.46923 * 179.97438 * 19 18 16 21 21 C 1.53001 * 109.46668 * 179.97438 * 20 19 18 22 22 S 1.81403 * 109.47004 * 179.97438 * 21 20 19 23 23 N 1.65593 * 104.45388 * 179.97438 * 22 21 20 24 24 O 1.42099 * 110.54309 * 291.62842 * 22 21 20 25 25 O 1.42100 * 110.54223 * 68.37264 * 22 21 20 26 26 H 0.97001 * 120.00089 * 0.02562 * 1 2 3 27 27 H 1.08000 * 119.96316 * 359.95475 * 11 10 9 28 28 H 1.08000 * 119.79245 * 180.02562 * 12 11 10 29 29 H 1.08005 * 119.83090 * 180.02562 * 13 12 11 30 30 H 1.08002 * 120.04765 * 179.74218 * 14 13 12 31 31 H 1.09007 * 109.47009 * 299.99988 * 19 18 16 32 32 H 1.08997 * 109.47259 * 59.99654 * 19 18 16 33 33 H 1.08994 * 109.47038 * 299.99948 * 20 19 18 34 34 H 1.09005 * 109.47262 * 60.00064 * 20 19 18 35 35 H 1.09002 * 109.47228 * 299.99486 * 21 20 19 36 36 H 1.08993 * 109.47425 * 60.00273 * 21 20 19 37 37 H 0.97003 * 120.00265 * 149.99471 * 23 22 21 38 38 H 0.97004 * 119.99913 * 330.00489 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0086 -1.2013 0.0005 8 1 1.4686 -2.1366 0.0005 9 8 3.3567 -1.2012 0.0011 10 6 3.9720 -2.4039 -0.1048 11 6 3.2243 -3.5737 -0.0905 12 6 3.8528 -4.7977 -0.1990 13 6 5.2312 -4.8700 -0.3232 14 6 5.9898 -3.7198 -0.3404 15 6 5.3678 -2.4733 -0.2315 16 6 6.1731 -1.2388 -0.2486 17 8 5.6284 -0.1568 -0.1532 18 8 7.5133 -1.3102 -0.3699 19 6 8.2420 -0.0543 -0.3799 20 6 9.7393 -0.3347 -0.5235 21 6 10.5071 0.9886 -0.5346 22 16 12.2823 0.6562 -0.7042 23 7 12.9855 2.1555 -0.7029 24 8 12.7867 0.0310 0.4679 25 8 12.5711 0.1354 -1.9944 26 1 -0.4850 0.8400 -0.0004 27 1 2.1497 -3.5258 0.0059 28 1 3.2666 -5.7047 -0.1878 29 1 5.7132 -5.8329 -0.4079 30 1 7.0640 -3.7818 -0.4332 31 1 7.9041 0.5552 -1.2180 32 1 8.0604 0.4786 0.5534 33 1 10.0768 -0.9441 0.3148 34 1 9.9212 -0.8678 -1.4567 35 1 10.1694 1.5976 -1.3733 36 1 10.3252 1.5221 0.3983 37 1 13.8837 2.2697 -0.3548 38 1 12.4991 2.9196 -1.0502 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744854415.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:03 Heat of formation + Delta-G solvation = -161.132669 kcal Electronic energy + Delta-G solvation = -25094.122298 eV Core-core repulsion = 21029.933868 eV Total energy + Delta-G solvation = -4064.188430 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.12410 -38.95405 -37.40447 -36.68285 -36.33869 -36.21331 -34.32161 -33.64355 -32.57622 -30.87629 -29.30451 -27.54818 -25.44970 -23.74964 -22.29510 -21.52345 -20.50040 -19.82034 -18.13096 -18.01037 -17.86434 -17.62684 -16.96373 -16.77702 -16.29420 -15.97167 -15.54611 -14.84682 -14.81305 -14.39115 -14.02288 -13.89596 -13.82571 -13.27683 -12.98780 -12.95139 -12.56789 -12.48291 -12.47213 -12.34493 -12.26255 -11.86987 -11.70128 -11.44922 -11.34888 -11.20190 -10.89716 -10.82484 -10.80588 -10.35546 -10.17626 -9.93652 -9.45915 -9.00046 -8.49719 -7.60261 -6.58365 -4.23546 -0.20753 1.38816 2.12926 2.41613 2.88928 3.18121 3.22309 3.27748 3.30756 3.53365 3.83608 4.13123 4.23217 4.37384 4.40828 4.56656 4.61594 4.88227 4.97790 5.03722 5.21876 5.32942 5.42238 5.50286 5.54267 5.55978 5.68447 5.90556 5.97767 6.31215 6.48968 6.56594 6.71506 6.79041 7.00225 7.07593 7.39712 7.59202 7.83235 8.39538 8.75986 9.36870 10.46502 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.014907 B = 0.002831 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.880381 B = 9887.687501 C =11573.449042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.072 3.928 3 Si 0.901 3.099 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.241 1.241 7 C -0.397 4.397 8 H 0.111 0.889 9 O -0.167 6.167 10 C 0.203 3.797 11 C -0.228 4.228 12 C -0.042 4.042 13 C -0.225 4.225 14 C -0.018 4.018 15 C -0.217 4.217 16 C 0.507 3.493 17 O -0.494 6.494 18 O -0.363 6.363 19 C 0.076 3.924 20 C -0.112 4.112 21 C -0.624 4.624 22 S 2.622 3.378 23 N -1.252 6.252 24 O -0.960 6.960 25 O -0.958 6.958 26 H 0.283 0.717 27 H 0.141 0.859 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.127 0.873 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.420 0.580 38 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.903 1.813 -1.075 21.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.134 4.134 3 Si 0.725 3.275 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.164 1.164 7 C -0.471 4.471 8 H 0.128 0.872 9 O -0.067 6.067 10 C 0.146 3.854 11 C -0.247 4.247 12 C -0.061 4.061 13 C -0.244 4.244 14 C -0.036 4.036 15 C -0.220 4.220 16 C 0.353 3.647 17 O -0.382 6.382 18 O -0.282 6.282 19 C 0.000 4.000 20 C -0.151 4.151 21 C -0.754 4.754 22 S 2.712 3.288 23 N -0.924 5.924 24 O -0.949 6.949 25 O -0.947 6.947 26 H 0.093 0.907 27 H 0.159 0.841 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.145 0.855 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.156 0.844 36 H 0.159 0.841 37 H 0.250 0.750 38 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 20.990 1.551 -1.087 21.075 hybrid contribution -0.396 1.735 0.057 1.780 sum 20.594 3.286 -1.030 20.880 Atomic orbital electron populations 1.69629 1.05801 1.29121 1.45428 1.24514 0.94993 0.99322 0.94558 0.86200 0.81192 0.80497 0.79598 1.19837 1.21014 1.16366 1.20952 0.76868 0.96927 1.52385 0.87184 1.83741 1.22433 1.25117 1.75361 1.18981 0.89848 0.85998 0.90601 1.21241 1.01384 0.91411 1.10695 1.21050 0.94466 0.96828 0.93724 1.20631 0.93941 0.97591 1.12208 1.20981 0.99235 0.90596 0.92784 1.18026 0.89787 0.90996 1.23164 1.21077 0.79752 0.90012 0.73826 1.90913 1.71729 1.29953 1.45567 1.86497 1.21299 1.35092 1.85316 1.22744 0.89187 0.84963 1.03060 1.21188 0.94511 0.93857 1.05528 1.30450 1.24640 1.07601 1.12663 1.04571 0.76486 0.73000 0.74707 1.53227 1.29172 1.28593 1.81449 1.93622 1.77300 1.73933 1.50085 1.93640 1.82219 1.77061 1.41755 0.90653 0.84145 0.86555 0.86630 0.85469 0.90957 0.90961 0.88823 0.88837 0.84369 0.84124 0.74982 0.76046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.44 13.96 55.48 0.77 -23.67 16 2 C 0.07 2.02 5.49 -17.51 -0.10 1.92 16 3 Si 0.90 22.31 28.62 -169.99 -4.86 17.45 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.24 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.40 -11.01 9.95 30.91 0.31 -10.70 16 8 H 0.11 3.03 5.44 -52.49 -0.29 2.75 16 9 O -0.17 -4.44 6.67 -20.99 -0.14 -4.58 16 10 C 0.20 4.70 6.66 -38.58 -0.26 4.44 16 11 C -0.23 -4.67 9.16 -39.44 -0.36 -5.03 16 12 C -0.04 -0.70 10.03 -39.53 -0.40 -1.10 16 13 C -0.22 -3.48 10.02 -39.61 -0.40 -3.88 16 14 C -0.02 -0.29 9.61 -39.18 -0.38 -0.67 16 15 C -0.22 -4.43 5.89 -104.82 -0.62 -5.05 16 16 C 0.51 10.34 7.89 34.46 0.27 10.61 16 17 O -0.49 -11.73 14.96 -26.59 -0.40 -12.12 16 18 O -0.36 -5.89 9.47 -40.65 -0.38 -6.27 16 19 C 0.08 0.96 5.48 37.16 0.20 1.16 16 20 C -0.11 -0.99 5.60 -26.73 -0.15 -1.14 16 21 C -0.62 -3.43 6.18 37.16 0.23 -3.20 16 22 S 2.62 18.02 5.97 -107.50 -0.64 17.37 16 23 N -1.25 -4.46 9.36 60.35 0.57 -3.90 16 24 O -0.96 -10.27 18.10 -57.54 -1.04 -11.31 16 25 O -0.96 -10.44 18.10 -57.54 -1.04 -11.48 16 26 H 0.28 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.14 2.96 5.64 -52.49 -0.30 2.66 16 28 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 29 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 30 H 0.13 1.77 7.61 -52.49 -0.40 1.37 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.14 0.46 8.14 -51.92 -0.42 0.04 16 36 H 0.14 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.42 1.19 8.96 -34.47 -0.31 0.88 16 38 H 0.41 0.39 8.96 -34.46 -0.31 0.08 16 LS Contribution 348.36 15.07 5.25 5.25 Total: -1.00 -37.95 348.36 -7.68 -45.63 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -4.12 Total: 0.29 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -1.64 Total: -12.64 kcal Atomic # 7 Polarization: -28.91 SS G_CDS: 1.34 Total: -27.57 kcal Atomic # 8 Polarization: -42.77 SS G_CDS: -3.01 Total: -45.78 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.86 Total: 17.45 kcal Atomic # 16 Polarization: 18.02 SS G_CDS: -0.64 Total: 17.37 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -37.95 -7.68 -45.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744854415.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.504 kcal (2) G-P(sol) polarization free energy of solvation -37.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds