Wall clock time and date at job start Tue Mar 31 2020 05:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86801 * 119.99710 * 2 1 4 4 H 1.48506 * 109.46830 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46903 * 299.99486 * 3 2 1 6 6 H 1.48492 * 109.47354 * 59.99589 * 3 2 1 7 7 C 1.38948 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99948 * 179.97438 * 7 2 1 9 9 N 1.37103 * 119.99557 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99452 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00070 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99700 * 179.97438 * 10 9 7 13 13 N 1.46496 * 109.46988 * 179.97438 * 12 10 9 14 14 C 1.34776 * 120.00203 * 179.97438 * 13 12 10 15 15 O 1.21565 * 119.99614 * 359.72658 * 14 13 12 16 16 C 1.47728 * 120.00061 * 180.02562 * 14 13 12 17 17 C 1.39669 * 120.11203 * 353.21841 * 16 14 13 18 18 C 1.38017 * 119.85554 * 179.97438 * 17 16 14 19 19 F 1.35100 * 119.96257 * 180.02562 * 18 17 16 20 20 C 1.38874 * 120.06834 * 359.97438 * 18 17 16 21 21 F 1.35102 * 119.88488 * 180.02562 * 20 18 17 22 22 C 1.38564 * 120.22541 * 359.97438 * 20 18 17 23 23 C 1.37890 * 120.14539 * 359.78826 * 22 20 18 24 24 N 1.48022 * 120.03878 * 180.23227 * 23 22 20 25 25 O 1.21800 * 119.99689 * 129.38408 * 24 23 22 26 26 O 1.21792 * 119.99927 * 309.38266 * 24 23 22 27 27 H 0.97006 * 120.00066 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00348 * 359.97438 * 9 7 2 29 29 H 1.08996 * 109.46883 * 60.00103 * 12 10 9 30 30 H 1.08996 * 109.47192 * 299.99919 * 12 10 9 31 31 H 0.97006 * 119.99815 * 0.02562 * 13 12 10 32 32 H 1.08008 * 120.07016 * 359.95155 * 17 16 14 33 33 H 1.07999 * 119.93073 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2126 6 1 1.8892 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2437 -4.8629 0.0011 13 7 2.1957 -5.9764 0.0004 14 6 1.7465 -7.2471 0.0013 15 8 0.5514 -7.4692 0.0077 16 6 2.7065 -8.3699 0.0011 17 6 4.0737 -8.1229 -0.1426 18 6 4.9660 -9.1759 -0.1415 19 9 6.2889 -8.9393 -0.2799 20 6 4.5054 -10.4780 0.0027 21 9 5.3822 -11.5059 0.0038 22 6 3.1498 -10.7266 0.1466 23 6 2.2509 -9.6810 0.1516 24 7 0.8038 -9.9488 0.3106 25 8 0.1601 -9.3401 1.1465 26 8 0.2568 -10.7778 -0.3944 27 1 -0.4850 0.8401 -0.0004 28 1 0.3533 -2.3906 0.0005 29 1 0.6168 -4.9208 -0.8886 30 1 0.6174 -4.9205 0.8913 31 1 3.1494 -5.7991 0.0000 32 1 4.4318 -7.1101 -0.2548 33 1 2.7969 -11.7411 0.2588 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809064893.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:17 Heat of formation + Delta-G solvation = -119.845947 kcal Electronic energy + Delta-G solvation = -26966.605969 eV Core-core repulsion = 22246.827136 eV Total energy + Delta-G solvation = -4719.778833 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.070 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.35913 -49.41916 -42.41058 -40.51392 -39.00943 -38.17432 -36.53572 -34.85611 -33.99515 -32.42869 -32.01749 -31.47484 -28.17563 -26.77457 -25.17955 -24.48481 -23.07847 -21.17798 -20.16184 -19.70783 -19.04962 -18.82344 -18.38400 -18.10804 -17.67744 -17.23503 -16.98349 -16.54253 -15.80471 -15.78688 -15.66416 -15.56438 -15.35236 -14.75813 -14.48561 -14.25213 -14.11141 -14.03104 -13.53733 -13.04208 -12.76448 -12.38117 -12.14421 -11.72981 -11.65021 -11.31889 -11.22033 -11.14312 -10.48704 -10.42753 -10.29885 -10.28809 -9.85600 -9.75368 -9.17976 -8.79646 -8.21527 -6.61299 -4.03954 -0.74364 -0.30790 0.64483 0.97463 1.83362 2.56092 2.72527 2.82134 3.03258 3.17171 3.23185 3.25075 3.40896 3.60044 3.75986 3.90988 4.03121 4.22847 4.53675 4.56440 4.65160 4.72693 4.89814 5.06950 5.46738 5.69795 5.76337 5.87643 6.14225 6.24565 7.24544 7.36937 7.49596 7.77800 7.89355 8.32222 8.93823 9.26841 9.73355 10.55189 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.017782 B = 0.002745 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.243785 B =10198.094401 C =11684.562742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.028 3.972 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.307 4.307 8 H 0.107 0.893 9 N -0.543 5.543 10 C 0.424 3.576 11 O -0.600 6.600 12 C 0.108 3.892 13 N -0.688 5.688 14 C 0.542 3.458 15 O -0.507 6.507 16 C -0.053 4.053 17 C -0.087 4.087 18 C 0.113 3.887 19 F -0.104 7.104 20 C 0.100 3.900 21 F -0.106 7.106 22 C -0.080 4.080 23 C 0.031 3.969 24 N 0.020 4.980 25 O -0.069 6.069 26 O -0.165 6.165 27 H 0.275 0.725 28 H 0.397 0.603 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.411 0.589 32 H 0.179 0.821 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.051 -19.269 0.216 20.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.176 4.176 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.437 4.437 8 H 0.125 0.875 9 N -0.177 5.177 10 C 0.210 3.790 11 O -0.488 6.488 12 C -0.019 4.019 13 N -0.342 5.342 14 C 0.326 3.674 15 O -0.383 6.383 16 C -0.058 4.058 17 C -0.107 4.107 18 C 0.092 3.908 19 F -0.082 7.082 20 C 0.078 3.922 21 F -0.084 7.084 22 C -0.100 4.100 23 C -0.052 4.052 24 N 0.551 4.449 25 O -0.306 6.306 26 O -0.374 6.374 27 H 0.085 0.915 28 H 0.231 0.769 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.251 0.749 32 H 0.196 0.804 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 7.689 -19.170 0.030 20.654 hybrid contribution 0.408 0.716 -0.028 0.825 sum 8.098 -18.453 0.002 20.152 Atomic orbital electron populations 1.69619 1.06052 1.28649 1.48724 1.25354 0.95679 1.00047 0.96520 0.85746 0.79673 0.80681 0.77930 1.19087 1.20537 1.20508 1.19785 0.93517 0.81869 1.48501 0.87517 1.41793 1.09585 1.04455 1.61906 1.19611 0.88245 0.84876 0.86303 1.90493 1.13624 1.86731 1.57933 1.21103 0.91518 0.85154 1.04122 1.45526 1.12096 1.04144 1.72427 1.17666 0.87746 0.82697 0.79336 1.90990 1.14713 1.84221 1.48339 1.19759 0.94067 0.92229 0.99765 1.21416 0.90156 1.00868 0.98281 1.17616 0.79573 0.91886 1.01706 1.91659 1.29349 1.94848 1.92359 1.17306 0.86981 0.83556 1.04347 1.91642 1.67117 1.56184 1.93454 1.20576 0.89856 1.00801 0.98770 1.20666 0.82964 0.93642 1.07903 1.43021 1.01640 0.99858 1.00384 1.94641 1.62841 1.46077 1.27022 1.94565 1.71095 1.28581 1.43180 0.91467 0.76906 0.89142 0.88843 0.74935 0.80381 0.80772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.97 13.05 55.50 0.72 -22.25 16 2 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 3 Si 0.93 19.80 29.55 -169.99 -5.02 14.77 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 6 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.31 -7.98 9.68 -14.93 -0.14 -8.13 16 8 H 0.11 2.89 7.16 -52.49 -0.38 2.51 16 9 N -0.54 -12.71 5.29 -10.96 -0.06 -12.76 16 10 C 0.42 8.96 7.85 -10.98 -0.09 8.88 16 11 O -0.60 -14.13 15.24 5.55 0.08 -14.05 16 12 C 0.11 1.78 6.15 -5.19 -0.03 1.75 16 13 N -0.69 -9.91 5.48 -62.47 -0.34 -10.25 16 14 C 0.54 7.70 7.63 -12.38 -0.09 7.60 16 15 O -0.51 -8.78 12.98 -19.29 -0.25 -9.04 16 16 C -0.05 -0.58 5.87 -104.97 -0.62 -1.20 16 17 C -0.09 -0.72 9.49 -39.13 -0.37 -1.10 16 18 C 0.11 0.88 7.30 -39.43 -0.29 0.60 16 19 F -0.10 -0.88 17.18 2.25 0.04 -0.84 16 20 C 0.10 0.75 7.31 -39.23 -0.29 0.46 16 21 F -0.11 -0.82 17.18 2.25 0.04 -0.78 16 22 C -0.08 -0.62 9.79 -39.59 -0.39 -1.01 16 23 C 0.03 0.34 6.32 -79.56 -0.50 -0.17 16 24 N 0.02 0.27 3.60 34.15 0.12 0.39 16 25 O -0.07 -1.09 16.09 -37.25 -0.60 -1.69 16 26 O -0.16 -2.35 19.14 -29.46 -0.56 -2.92 16 27 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16 28 H 0.40 8.94 7.90 -40.82 -0.32 8.62 16 29 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 31 H 0.41 5.50 5.51 -40.82 -0.22 5.28 16 32 H 0.18 1.25 6.46 -52.48 -0.34 0.91 16 33 H 0.17 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 318.65 15.07 4.80 4.80 Total: -1.00 -30.61 318.65 -5.60 -36.21 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -1.66 Total: 10.12 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: -2.91 Total: 8.28 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.45 Total: -44.87 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -1.33 Total: -27.70 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.08 Total: -1.62 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.61 -5.60 -36.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809064893.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.640 kcal (2) G-P(sol) polarization free energy of solvation -30.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds