Wall clock time and date at job start Tue Mar 31 2020 05:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86801 * 119.99710 * 2 1 4 4 H 1.48506 * 109.46830 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46903 * 299.99486 * 3 2 1 6 6 H 1.48492 * 109.47354 * 59.99589 * 3 2 1 7 7 C 1.38948 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99948 * 179.97438 * 7 2 1 9 9 N 1.37103 * 119.99557 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99452 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00070 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99700 * 179.97438 * 10 9 7 13 13 N 1.46496 * 109.46988 * 179.97438 * 12 10 9 14 14 C 1.34776 * 120.00203 * 179.97438 * 13 12 10 15 15 O 1.21565 * 119.99614 * 359.72658 * 14 13 12 16 16 C 1.47728 * 120.00061 * 180.02562 * 14 13 12 17 17 C 1.39669 * 120.11203 * 353.21841 * 16 14 13 18 18 C 1.38017 * 119.85554 * 179.97438 * 17 16 14 19 19 F 1.35100 * 119.96257 * 180.02562 * 18 17 16 20 20 C 1.38874 * 120.06834 * 359.97438 * 18 17 16 21 21 F 1.35102 * 119.88488 * 180.02562 * 20 18 17 22 22 C 1.38564 * 120.22541 * 359.97438 * 20 18 17 23 23 C 1.37890 * 120.14539 * 359.78826 * 22 20 18 24 24 N 1.48022 * 120.03878 * 180.23227 * 23 22 20 25 25 O 1.21800 * 119.99689 * 129.38408 * 24 23 22 26 26 O 1.21792 * 119.99927 * 309.38266 * 24 23 22 27 27 H 0.97006 * 120.00066 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00348 * 359.97438 * 9 7 2 29 29 H 1.08996 * 109.46883 * 60.00103 * 12 10 9 30 30 H 1.08996 * 109.47192 * 299.99919 * 12 10 9 31 31 H 0.97006 * 119.99815 * 0.02562 * 13 12 10 32 32 H 1.08008 * 120.07016 * 359.95155 * 17 16 14 33 33 H 1.07999 * 119.93073 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2126 6 1 1.8892 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2437 -4.8629 0.0011 13 7 2.1957 -5.9764 0.0004 14 6 1.7465 -7.2471 0.0013 15 8 0.5514 -7.4692 0.0077 16 6 2.7065 -8.3699 0.0011 17 6 4.0737 -8.1229 -0.1426 18 6 4.9660 -9.1759 -0.1415 19 9 6.2889 -8.9393 -0.2799 20 6 4.5054 -10.4780 0.0027 21 9 5.3822 -11.5059 0.0038 22 6 3.1498 -10.7266 0.1466 23 6 2.2509 -9.6810 0.1516 24 7 0.8038 -9.9488 0.3106 25 8 0.1601 -9.3401 1.1465 26 8 0.2568 -10.7778 -0.3944 27 1 -0.4850 0.8401 -0.0004 28 1 0.3533 -2.3906 0.0005 29 1 0.6168 -4.9208 -0.8886 30 1 0.6174 -4.9205 0.8913 31 1 3.1494 -5.7991 0.0000 32 1 4.4318 -7.1101 -0.2548 33 1 2.7969 -11.7411 0.2588 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809064893.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:16 Heat of formation + Delta-G solvation = -139.483505 kcal Electronic energy + Delta-G solvation = -26967.457518 eV Core-core repulsion = 22246.827136 eV Total energy + Delta-G solvation = -4720.630381 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.070 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.02386 -50.08279 -43.40558 -41.58770 -40.31074 -39.52980 -37.60474 -36.37294 -35.60573 -33.45403 -33.18691 -32.82557 -29.53112 -27.82522 -26.59345 -25.61689 -23.99128 -22.24342 -21.53131 -20.85638 -20.17567 -19.96523 -19.73371 -19.18866 -18.56785 -18.04929 -17.84635 -17.52192 -17.15654 -16.97703 -16.92876 -16.42828 -16.37095 -16.05380 -15.72508 -15.70338 -15.25313 -14.89181 -14.81423 -14.03416 -14.01168 -13.55790 -13.53847 -13.45957 -12.92492 -12.75457 -12.44904 -12.37119 -12.25937 -12.10922 -11.58500 -11.47736 -11.00333 -10.63222 -10.59415 -10.38464 -10.10314 -8.51811 -6.01941 -1.59534 -1.01369 -0.37488 0.06304 1.00159 1.34950 1.42766 1.50151 1.58826 1.81692 1.89793 1.99513 2.28066 2.53542 2.68818 2.90522 3.06057 3.15854 3.17707 3.44282 3.72379 3.84562 4.06667 4.14576 4.20797 4.37098 4.40798 4.77220 4.95973 5.11198 5.38501 5.90188 6.10060 6.36549 6.45901 6.73774 7.02740 7.42686 7.91711 8.65053 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.017782 B = 0.002745 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.243785 B =10198.094401 C =11684.562742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 0.995 3.005 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.336 4.336 8 H 0.089 0.911 9 N -0.557 5.557 10 C 0.433 3.567 11 O -0.622 6.622 12 C 0.120 3.880 13 N -0.686 5.686 14 C 0.545 3.455 15 O -0.540 6.540 16 C -0.065 4.065 17 C -0.071 4.071 18 C 0.123 3.877 19 F -0.103 7.103 20 C 0.118 3.882 21 F -0.101 7.101 22 C -0.061 4.061 23 C 0.022 3.978 24 N 0.022 4.978 25 O -0.120 6.120 26 O -0.158 6.158 27 H 0.280 0.720 28 H 0.399 0.601 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.417 0.583 32 H 0.192 0.808 33 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.619 -20.309 -0.082 22.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.211 4.211 3 Si 0.819 3.181 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.465 4.465 8 H 0.107 0.893 9 N -0.193 5.193 10 C 0.220 3.780 11 O -0.511 6.511 12 C -0.007 4.007 13 N -0.341 5.341 14 C 0.330 3.670 15 O -0.418 6.418 16 C -0.069 4.069 17 C -0.091 4.091 18 C 0.103 3.897 19 F -0.081 7.081 20 C 0.096 3.904 21 F -0.079 7.079 22 C -0.080 4.080 23 C -0.061 4.061 24 N 0.549 4.451 25 O -0.347 6.347 26 O -0.374 6.374 27 H 0.089 0.911 28 H 0.234 0.766 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.258 0.742 32 H 0.209 0.791 33 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 9.250 -20.179 -0.206 22.199 hybrid contribution 0.053 0.857 0.004 0.859 sum 9.303 -19.321 -0.202 21.445 Atomic orbital electron populations 1.69683 1.07026 1.29602 1.49208 1.26114 0.96487 1.02691 0.95782 0.84830 0.78241 0.76834 0.78212 1.19257 1.19805 1.19791 1.19776 0.93017 0.83423 1.50269 0.89328 1.41844 1.09677 1.04622 1.63112 1.20297 0.88109 0.85763 0.83834 1.90472 1.14932 1.87463 1.58200 1.20897 0.91370 0.83277 1.05138 1.45451 1.11985 1.03890 1.72746 1.18020 0.87863 0.82988 0.78078 1.90983 1.16406 1.84682 1.49772 1.19415 0.94307 0.90988 1.02227 1.21404 0.88884 1.01718 0.97059 1.17546 0.79377 0.91826 1.00987 1.91674 1.29350 1.94864 1.92245 1.17184 0.86729 0.83383 1.03108 1.91670 1.66935 1.56041 1.93242 1.20724 0.89287 1.01073 0.96964 1.20654 0.81140 0.94452 1.09843 1.43369 1.02903 0.99180 0.99678 1.94647 1.64264 1.47357 1.28400 1.94528 1.72144 1.28223 1.42473 0.91074 0.76647 0.88042 0.87912 0.74235 0.79098 0.78277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.31 13.05 21.66 0.28 -47.02 16 2 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 3 Si 1.00 40.41 29.55 68.60 2.03 42.44 16 4 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.34 -17.67 9.68 84.04 0.81 -16.86 16 8 H 0.09 4.90 7.16 -2.91 -0.02 4.88 16 9 N -0.56 -26.42 5.29 -306.98 -1.62 -28.05 16 10 C 0.43 18.33 7.85 87.66 0.69 19.02 16 11 O -0.62 -29.28 15.24 -3.06 -0.05 -29.32 16 12 C 0.12 3.92 6.15 85.63 0.53 4.45 16 13 N -0.69 -19.26 5.48 -469.84 -2.57 -21.83 16 14 C 0.55 15.20 7.63 86.75 0.66 15.86 16 15 O -0.54 -18.89 12.98 19.60 0.25 -18.63 16 16 C -0.06 -1.32 5.87 -20.09 -0.12 -1.44 16 17 C -0.07 -1.01 9.49 22.56 0.21 -0.80 16 18 C 0.12 1.56 7.30 22.37 0.16 1.72 16 19 F -0.10 -1.44 17.18 44.97 0.77 -0.66 16 20 C 0.12 1.36 7.31 22.50 0.16 1.53 16 21 F -0.10 -1.20 17.18 44.97 0.77 -0.42 16 22 C -0.06 -0.77 9.79 22.27 0.22 -0.55 16 23 C 0.02 0.44 6.32 36.63 0.23 0.67 16 24 N 0.02 0.59 3.60 -45.86 -0.17 0.43 16 25 O -0.12 -3.91 16.09 26.33 0.42 -3.49 16 26 O -0.16 -4.40 19.14 18.90 0.36 -4.04 16 27 H 0.28 13.54 8.31 -92.70 -0.77 12.77 16 28 H 0.40 18.29 7.90 -92.71 -0.73 17.56 16 29 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 30 H 0.10 3.21 8.14 -2.39 -0.02 3.20 16 31 H 0.42 10.71 5.51 -92.70 -0.51 10.20 16 32 H 0.19 2.23 6.46 -2.91 -0.02 2.21 16 33 H 0.20 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -66.27 318.65 4.52 -61.75 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.01 Total: 25.28 kcal Atomic # 6 Polarization: 19.54 SS G_CDS: 4.03 Total: 23.58 kcal Atomic # 7 Polarization: -92.40 SS G_CDS: -4.08 Total: -96.48 kcal Atomic # 8 Polarization: -56.48 SS G_CDS: 0.99 Total: -55.48 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 1.54 Total: -1.09 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Total: -66.27 4.52 -61.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809064893.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.732 kcal (2) G-P(sol) polarization free energy of solvation -66.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds