Wall clock time and date at job start Tue Mar 31 2020 05:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42896 * 114.00619 * 2 1 4 4 C 1.52996 * 109.47620 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47045 * 64.99960 * 4 3 2 6 6 S 1.65597 * 120.00079 * 164.72323 * 5 4 3 7 7 O 1.42100 * 106.40448 * 178.54099 * 6 5 4 8 8 O 1.42103 * 106.40365 * 311.46606 * 6 5 4 9 9 C 1.76197 * 107.21750 * 65.00357 * 6 5 4 10 10 C 1.38377 * 119.84579 * 269.72512 * 9 6 5 11 11 C 1.37941 * 120.15521 * 179.76519 * 10 9 6 12 12 C 1.39660 * 119.84207 * 0.52831 * 11 10 9 13 13 C 1.47659 * 120.15440 * 179.70322 * 12 11 10 14 14 O 1.21513 * 120.00164 * 180.02562 * 13 12 11 15 15 O 1.34732 * 119.99966 * 0.02562 * 13 12 11 16 16 C 1.34853 * 117.00295 * 179.97438 * 15 13 12 17 17 H 1.07994 * 119.99720 * 0.02562 * 16 15 13 18 18 C 1.38816 * 119.99952 * 179.97438 * 16 15 13 19 19 N 1.31405 * 120.00170 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99676 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47294 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46979 * 120.00320 * 20 18 16 23 23 H 1.48500 * 109.46982 * 240.00363 * 20 18 16 24 24 C 1.39673 * 119.69389 * 359.72450 * 12 11 10 25 25 C 1.37927 * 119.84553 * 359.97438 * 24 12 11 26 26 H 1.09005 * 109.47064 * 300.00135 * 1 2 3 27 27 H 1.09008 * 109.47076 * 59.99732 * 1 2 3 28 28 H 1.09002 * 109.47610 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46777 * 59.99936 * 3 2 1 30 30 H 1.09001 * 109.47388 * 300.00034 * 3 2 1 31 31 H 1.08999 * 109.47565 * 305.00275 * 4 3 2 32 32 H 1.09000 * 109.47473 * 185.00277 * 4 3 2 33 33 H 0.97005 * 119.99811 * 345.00302 * 5 4 3 34 34 H 1.08004 * 119.92138 * 0.02562 * 10 9 6 35 35 H 1.07999 * 120.07795 * 180.23320 * 11 10 9 36 36 H 0.97006 * 120.00026 * 179.97438 * 19 18 16 37 37 H 1.07998 * 120.07641 * 179.97438 * 24 12 11 38 38 H 1.08002 * 119.92291 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 16 5.5686 0.6457 -1.6996 7 8 5.6782 -0.0697 -2.9224 8 8 5.9563 2.0053 -1.5571 9 6 6.4940 -0.2631 -0.5069 10 6 6.9940 0.3793 0.6120 11 6 7.7152 -0.3269 1.5521 12 6 7.9497 -1.6912 1.3671 13 6 8.7264 -2.4525 2.3658 14 8 8.9291 -3.6393 2.2018 15 8 9.2103 -1.8312 3.4590 16 6 9.9104 -2.5842 4.3316 17 1 10.0614 -3.6358 4.1375 18 6 10.4378 -2.0074 5.4789 19 7 10.2544 -0.7278 5.7148 20 14 11.4082 -3.0504 6.6872 21 1 11.4716 -4.4496 6.1940 22 1 12.7848 -2.5082 6.8149 23 1 10.7401 -3.0222 8.0132 24 6 7.4464 -2.3321 0.2327 25 6 6.7216 -1.6149 -0.6961 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6886 1.8463 0.8901 30 1 1.6887 1.8464 -0.8900 31 1 3.8508 0.5683 0.8426 32 1 3.9785 2.1764 0.0903 33 1 3.3355 0.1083 -1.8188 34 1 6.8157 1.4354 0.7516 35 1 8.1017 0.1750 2.4269 36 1 10.6227 -0.3248 6.5167 37 1 7.6244 -3.3868 0.0832 38 1 6.3323 -2.1091 -1.5739 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811835345.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:36 Heat of formation + Delta-G solvation = -169.652695 kcal Electronic energy + Delta-G solvation = -25219.513499 eV Core-core repulsion = 21154.955613 eV Total energy + Delta-G solvation = -4064.557886 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.62393 -38.49712 -38.23537 -37.30198 -35.92619 -35.33531 -35.29349 -32.41879 -31.31696 -30.90137 -29.52170 -26.57446 -25.95302 -23.99144 -23.01056 -22.52500 -20.55617 -19.65913 -18.16997 -17.92703 -17.61556 -17.15407 -16.87950 -16.70859 -15.84490 -15.57542 -15.17849 -14.80458 -14.70030 -14.48189 -14.46181 -14.19384 -13.84047 -13.39658 -13.31164 -13.04681 -12.70347 -12.40761 -12.35807 -12.16803 -12.08205 -11.87347 -11.76437 -11.52223 -11.37513 -11.09275 -10.88290 -10.63877 -10.51471 -10.10483 -10.01768 -9.78237 -9.25566 -9.16512 -8.91422 -8.77121 -6.64303 -4.24020 0.27538 0.64263 1.47686 2.77977 3.00568 3.08990 3.16744 3.21905 3.35950 3.65876 3.76158 4.11247 4.26968 4.33680 4.49132 4.71691 4.89261 4.91205 4.96985 4.97943 4.98382 5.02600 5.17265 5.31042 5.36230 5.46443 5.51369 5.65306 5.80135 5.91551 6.05206 6.22954 6.49218 6.70341 6.76415 6.79156 6.94697 7.20510 7.73667 8.52017 8.83901 9.62287 10.52490 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.015725 B = 0.002800 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.166603 B = 9998.865417 C =10664.515065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.054 3.946 4 C 0.117 3.883 5 N -1.114 6.114 6 S 2.701 3.299 7 O -0.960 6.960 8 O -0.959 6.959 9 C -0.675 4.675 10 C -0.033 4.033 11 C -0.098 4.098 12 C -0.024 4.024 13 C 0.416 3.584 14 O -0.549 6.549 15 O -0.198 6.198 16 C -0.369 4.369 17 H 0.101 0.899 18 C 0.041 3.959 19 N -0.850 5.850 20 Si 0.948 3.052 21 H -0.263 1.263 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.096 4.096 25 C -0.029 4.029 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.421 0.579 34 H 0.142 0.858 35 H 0.151 0.849 36 H 0.274 0.726 37 H 0.143 0.857 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.355 6.183 -10.461 21.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.024 4.024 4 C -0.010 4.010 5 N -0.875 5.875 6 S 2.791 3.209 7 O -0.951 6.951 8 O -0.949 6.949 9 C -0.763 4.763 10 C -0.053 4.053 11 C -0.117 4.117 12 C -0.026 4.026 13 C 0.265 3.735 14 O -0.448 6.448 15 O -0.104 6.104 16 C -0.445 4.445 17 H 0.119 0.881 18 C -0.165 4.165 19 N -0.485 5.485 20 Si 0.772 3.228 21 H -0.187 1.187 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.115 4.115 25 C -0.049 4.049 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.256 0.744 34 H 0.160 0.840 35 H 0.169 0.831 36 H 0.084 0.916 37 H 0.161 0.839 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.662 6.434 -10.895 20.922 hybrid contribution 0.110 -0.889 1.112 1.427 sum -16.553 5.546 -9.783 20.012 Atomic orbital electron populations 1.22764 0.80769 1.03009 1.00003 1.87926 1.19866 1.27460 1.95434 1.22736 0.92859 0.85417 1.01438 1.21403 0.94038 0.99235 0.86276 1.55441 1.27284 1.71653 1.33085 1.01623 0.72203 0.73839 0.73229 1.93586 1.85575 1.74393 1.41522 1.93580 1.81752 1.32967 1.86581 1.30795 1.20482 1.07823 1.17181 1.20857 0.93657 0.99679 0.91063 1.21748 0.96885 0.93372 0.99710 1.19809 0.95319 0.93836 0.93633 1.20683 0.83030 0.86214 0.83621 1.90647 1.60102 1.16418 1.77611 1.83876 1.57436 1.41427 1.27668 1.21471 1.29474 0.94245 0.99299 0.88098 1.25465 0.97240 0.96472 0.97284 1.69972 1.41443 1.10637 1.26458 0.85531 0.78720 0.79559 0.79025 1.18697 1.19901 1.19902 1.21345 0.96576 1.01066 0.92559 1.20732 0.94694 0.91597 0.97848 0.93940 0.94027 0.89471 0.91545 0.92240 0.90288 0.88490 0.74369 0.84032 0.83136 0.91616 0.83946 0.84059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.32 10.50 -35.23 -0.37 -3.69 16 3 C 0.05 0.36 6.13 37.16 0.23 0.58 16 4 C 0.12 0.92 6.61 -4.04 -0.03 0.89 16 5 N -1.11 -9.90 5.96 -10.61 -0.06 -9.96 16 6 S 2.70 32.14 5.74 -107.50 -0.62 31.53 16 7 O -0.96 -13.64 17.27 -57.17 -0.99 -14.63 16 8 O -0.96 -13.41 16.73 -57.17 -0.96 -14.37 16 9 C -0.67 -9.29 5.95 -39.48 -0.24 -9.52 16 10 C -0.03 -0.48 9.50 -39.64 -0.38 -0.86 16 11 C -0.10 -1.73 9.62 -39.16 -0.38 -2.11 16 12 C -0.02 -0.48 5.87 -104.98 -0.62 -1.10 16 13 C 0.42 10.41 7.84 34.58 0.27 10.68 16 14 O -0.55 -14.80 15.59 -19.28 -0.30 -15.10 16 15 O -0.20 -5.50 8.99 -21.64 -0.19 -5.70 16 16 C -0.37 -10.56 9.65 30.95 0.30 -10.26 16 17 H 0.10 2.91 6.86 -52.49 -0.36 2.55 16 18 C 0.04 1.11 5.50 -17.52 -0.10 1.02 16 19 N -0.85 -23.61 13.67 55.49 0.76 -22.85 16 20 Si 0.95 20.36 29.55 -169.99 -5.02 15.34 16 21 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 C -0.10 -1.65 9.60 -39.16 -0.38 -2.03 16 25 C -0.03 -0.42 9.50 -39.64 -0.38 -0.80 16 26 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 27 H 0.04 0.19 8.14 -51.92 -0.42 -0.23 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.10 0.65 7.75 -51.93 -0.40 0.25 16 33 H 0.42 3.19 8.51 -34.47 -0.29 2.90 16 34 H 0.14 1.68 7.60 -52.48 -0.40 1.28 16 35 H 0.15 2.75 7.61 -52.49 -0.40 2.35 16 36 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.14 2.36 7.65 -52.49 -0.40 1.96 16 38 H 0.14 1.68 7.60 -52.49 -0.40 1.28 16 LS Contribution 352.84 15.07 5.32 5.32 Total: -1.00 -35.96 352.84 -7.33 -43.29 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -4.33 Total: 3.02 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -0.57 Total: -12.21 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.70 Total: -32.81 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: -2.81 Total: -53.48 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 32.14 SS G_CDS: -0.62 Total: 31.53 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.96 -7.33 -43.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811835345.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.360 kcal (2) G-P(sol) polarization free energy of solvation -35.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds