Wall clock time and date at job start Tue Mar 31 2020 05:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99957 * 2 1 4 4 H 1.48503 * 109.47212 * 270.00409 * 3 2 1 5 5 H 1.48498 * 109.47097 * 30.00431 * 3 2 1 6 6 H 1.48499 * 109.47045 * 150.00458 * 3 2 1 7 7 C 1.37874 * 119.99827 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99953 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00221 * 359.97438 * 7 2 1 10 10 O 1.42892 * 109.47374 * 180.02562 * 9 7 2 11 11 C 1.42905 * 114.00250 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47043 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.46903 * 65.00260 * 12 11 10 14 14 C 1.34717 * 117.00181 * 179.97438 * 13 12 11 15 15 O 1.21471 * 119.99334 * 0.02562 * 14 13 12 16 16 C 1.47721 * 120.00368 * 179.97438 * 14 13 12 17 17 C 1.39628 * 120.14900 * 180.02562 * 16 14 13 18 18 C 1.37947 * 119.84604 * 180.02562 * 17 16 14 19 19 C 1.38363 * 120.15233 * 0.02562 * 18 17 16 20 20 S 1.76193 * 119.85048 * 179.97438 * 19 18 17 21 21 N 1.65606 * 107.21910 * 90.00418 * 20 19 18 22 22 O 1.42105 * 106.40403 * 203.54307 * 20 19 18 23 23 O 1.42098 * 106.40145 * 336.46236 * 20 19 18 24 24 C 1.38375 * 120.30328 * 0.23802 * 19 18 17 25 25 C 1.37945 * 120.14617 * 359.49053 * 24 19 18 26 26 H 0.96998 * 119.99845 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46957 * 60.00380 * 9 7 2 28 28 H 1.09000 * 109.46866 * 300.00508 * 9 7 2 29 29 H 1.09001 * 109.46768 * 60.00050 * 11 10 9 30 30 H 1.08997 * 109.47118 * 300.00003 * 11 10 9 31 31 H 1.08996 * 109.47837 * 304.99968 * 12 11 10 32 32 H 1.09001 * 109.47127 * 184.99575 * 12 11 10 33 33 H 1.08003 * 120.07632 * 359.97438 * 17 16 14 34 34 H 1.07999 * 119.92216 * 179.97438 * 18 17 16 35 35 H 0.97003 * 119.99610 * 270.00212 * 21 20 19 36 36 H 0.96993 * 120.00139 * 89.99542 * 21 20 19 37 37 H 1.07999 * 119.92492 * 179.71831 * 24 19 18 38 38 H 1.08000 * 120.07508 * 180.25691 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8755 -0.0011 12 6 2.6480 -5.9562 -0.0017 13 8 3.3993 -5.8892 1.2390 14 6 4.3970 -6.7802 1.3988 15 8 4.6331 -7.5906 0.5253 16 6 5.2045 -6.7709 2.6357 17 6 6.2397 -7.6927 2.8043 18 6 6.9895 -7.6788 3.9621 19 6 6.7174 -6.7547 4.9553 20 16 7.6797 -6.7446 6.4312 21 7 8.9603 -5.7263 6.1745 22 8 6.8753 -6.1335 7.4306 23 8 8.2253 -8.0499 6.5634 24 6 5.6895 -5.8419 4.7971 25 6 4.9355 -5.8411 3.6420 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5570 0.8896 29 1 0.9452 -4.9822 -0.8914 30 1 0.9446 -4.9828 0.8886 31 1 3.3215 -5.7953 -0.8434 32 1 2.1820 -6.9375 -0.0916 33 1 6.4523 -8.4154 2.0304 34 1 7.7902 -8.3915 4.0940 35 1 9.7890 -6.0722 5.8079 36 1 8.8815 -4.7840 6.3907 37 1 5.4796 -5.1263 5.5782 38 1 4.1362 -5.1254 3.5180 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815178473.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:05 Heat of formation + Delta-G solvation = -183.381005 kcal Electronic energy + Delta-G solvation = -24593.072444 eV Core-core repulsion = 20527.919254 eV Total energy + Delta-G solvation = -4065.153190 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.74408 -39.13377 -37.65576 -37.14995 -36.29388 -36.15405 -33.68876 -32.84738 -32.21602 -31.54893 -30.10372 -27.03817 -25.28386 -23.31540 -22.57048 -22.23096 -21.21114 -20.01423 -18.68731 -18.11860 -17.85993 -17.50601 -17.02485 -16.64484 -16.41163 -15.75220 -15.42710 -15.14414 -14.91392 -14.66734 -14.45451 -14.12481 -13.97276 -13.57131 -13.39543 -12.91744 -12.69546 -12.66308 -12.53432 -12.45524 -12.05030 -11.69608 -11.60451 -11.51248 -11.05370 -10.95165 -10.88870 -10.83253 -10.60499 -10.50664 -10.11067 -9.89226 -9.51302 -9.19262 -8.94602 -8.28011 -6.17212 -4.19288 -0.22437 0.07128 0.85530 2.07780 2.48538 2.76229 3.18114 3.26163 3.31411 3.36273 3.40977 3.85324 4.26182 4.29136 4.42210 4.45709 4.64596 4.82489 4.91499 5.09788 5.17060 5.19483 5.34791 5.44836 5.49001 5.53107 5.61094 5.76296 5.79882 5.88522 5.98467 6.28725 6.35596 6.59910 6.98626 7.33217 7.58205 7.72247 8.06316 8.44989 8.92903 9.45721 10.94308 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.012442 B = 0.002543 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.851458 B =11005.985124 C =12732.350080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.516 4.516 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.075 3.925 13 O -0.333 6.333 14 C 0.502 3.498 15 O -0.504 6.504 16 C -0.064 4.064 17 C -0.080 4.080 18 C -0.035 4.035 19 C -0.659 4.659 20 S 2.706 3.294 21 N -1.241 6.241 22 O -0.952 6.952 23 O -0.956 6.956 24 C -0.032 4.032 25 C -0.079 4.079 26 H 0.265 0.735 27 H 0.006 0.994 28 H 0.008 0.992 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.421 0.579 36 H 0.423 0.577 37 H 0.152 0.848 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.594 -15.079 10.385 24.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.017 4.017 12 C 0.002 3.998 13 O -0.248 6.248 14 C 0.346 3.654 15 O -0.393 6.393 16 C -0.065 4.065 17 C -0.099 4.099 18 C -0.055 4.055 19 C -0.745 4.745 20 S 2.791 3.209 21 N -0.913 5.913 22 O -0.942 6.942 23 O -0.946 6.946 24 C -0.052 4.052 25 C -0.098 4.098 26 H 0.074 0.926 27 H 0.024 0.976 28 H 0.025 0.975 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.166 0.834 34 H 0.167 0.833 35 H 0.250 0.750 36 H 0.252 0.748 37 H 0.169 0.831 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 15.325 -15.724 10.880 24.504 hybrid contribution -0.015 1.278 -1.165 1.730 sum 15.310 -14.446 9.715 23.183 Atomic orbital electron populations 1.69959 1.06117 1.27275 1.50372 1.24953 0.94994 0.99482 0.95059 0.86319 0.79650 0.82159 0.78259 1.20451 1.21022 1.19607 1.21031 0.94068 0.89267 1.51064 0.91531 1.20245 0.88726 0.83438 0.95555 1.87914 1.35372 1.12598 1.95247 1.22333 0.93136 0.85424 1.00776 1.23315 0.93646 0.99118 0.83747 1.86640 1.42958 1.53237 1.41994 1.21111 0.79201 0.78570 0.86508 1.90831 1.67893 1.37892 1.42730 1.19570 0.96220 0.97889 0.92848 1.21410 0.93164 0.97345 0.97950 1.20865 0.98052 0.95334 0.91210 1.31347 1.14363 1.06237 1.22545 1.01572 0.72752 0.73082 0.73483 1.53325 1.30119 1.24536 1.83369 1.93636 1.68777 1.77240 1.54571 1.93618 1.78146 1.37224 1.85573 1.21010 0.91600 0.95336 0.97215 1.21812 0.99100 0.96984 0.91867 0.92573 0.97579 0.97453 0.91699 0.93057 0.90190 0.90119 0.83442 0.83268 0.75001 0.74829 0.83078 0.82622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.38 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.91 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -14.90 9.43 -34.44 -0.32 -15.22 16 8 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 9 C 0.19 5.18 5.69 36.01 0.20 5.39 16 10 O -0.39 -9.14 10.30 -38.80 -0.40 -9.54 16 11 C 0.06 1.06 6.33 37.16 0.24 1.30 16 12 C 0.08 1.13 5.85 37.16 0.22 1.35 16 13 O -0.33 -5.26 9.44 -43.32 -0.41 -5.67 16 14 C 0.50 7.28 7.90 34.61 0.27 7.55 16 15 O -0.50 -8.01 16.14 -19.24 -0.31 -8.32 16 16 C -0.06 -0.77 5.87 -104.98 -0.62 -1.38 16 17 C -0.08 -0.80 9.60 -39.17 -0.38 -1.17 16 18 C -0.04 -0.29 9.50 -39.64 -0.38 -0.67 16 19 C -0.66 -5.50 5.98 -39.48 -0.24 -5.74 16 20 S 2.71 19.57 6.28 -107.50 -0.67 18.90 16 21 N -1.24 -4.38 9.52 60.35 0.57 -3.80 16 22 O -0.95 -9.89 17.26 -57.17 -0.99 -10.88 16 23 O -0.96 -9.41 17.27 -57.17 -0.99 -10.40 16 24 C -0.03 -0.30 9.50 -39.64 -0.38 -0.68 16 25 C -0.08 -0.87 9.62 -39.17 -0.38 -1.24 16 26 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.15 1.32 7.65 -52.48 -0.40 0.91 16 34 H 0.15 0.87 7.60 -52.49 -0.40 0.48 16 35 H 0.42 0.70 8.96 -34.47 -0.31 0.40 16 36 H 0.42 0.89 8.96 -34.47 -0.31 0.58 16 37 H 0.15 1.12 7.60 -52.49 -0.40 0.72 16 38 H 0.16 1.72 7.61 -52.49 -0.40 1.32 16 LS Contribution 354.44 15.07 5.34 5.34 Total: -1.00 -37.64 354.44 -8.28 -45.93 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -4.30 Total: -3.29 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -1.85 Total: -9.03 kcal Atomic # 7 Polarization: -30.76 SS G_CDS: 1.31 Total: -29.45 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -3.09 Total: -44.80 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 19.57 SS G_CDS: -0.67 Total: 18.90 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.64 -8.28 -45.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815178473.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.455 kcal (2) G-P(sol) polarization free energy of solvation -37.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds