Wall clock time and date at job start Tue Mar 31 2020 05:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99957 * 2 1 4 4 H 1.48503 * 109.47212 * 270.00409 * 3 2 1 5 5 H 1.48498 * 109.47097 * 30.00431 * 3 2 1 6 6 H 1.48499 * 109.47045 * 150.00458 * 3 2 1 7 7 C 1.37874 * 119.99827 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99953 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00221 * 359.97438 * 7 2 1 10 10 O 1.42892 * 109.47374 * 180.02562 * 9 7 2 11 11 C 1.42905 * 114.00250 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47043 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.46903 * 65.00260 * 12 11 10 14 14 C 1.34717 * 117.00181 * 179.97438 * 13 12 11 15 15 O 1.21471 * 119.99334 * 0.02562 * 14 13 12 16 16 C 1.47721 * 120.00368 * 179.97438 * 14 13 12 17 17 C 1.39628 * 120.14900 * 180.02562 * 16 14 13 18 18 C 1.37947 * 119.84604 * 180.02562 * 17 16 14 19 19 C 1.38363 * 120.15233 * 0.02562 * 18 17 16 20 20 S 1.76193 * 119.85048 * 179.97438 * 19 18 17 21 21 N 1.65606 * 107.21910 * 90.00418 * 20 19 18 22 22 O 1.42105 * 106.40403 * 203.54307 * 20 19 18 23 23 O 1.42098 * 106.40145 * 336.46236 * 20 19 18 24 24 C 1.38375 * 120.30328 * 0.23802 * 19 18 17 25 25 C 1.37945 * 120.14617 * 359.49053 * 24 19 18 26 26 H 0.96998 * 119.99845 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46957 * 60.00380 * 9 7 2 28 28 H 1.09000 * 109.46866 * 300.00508 * 9 7 2 29 29 H 1.09001 * 109.46768 * 60.00050 * 11 10 9 30 30 H 1.08997 * 109.47118 * 300.00003 * 11 10 9 31 31 H 1.08996 * 109.47837 * 304.99968 * 12 11 10 32 32 H 1.09001 * 109.47127 * 184.99575 * 12 11 10 33 33 H 1.08003 * 120.07632 * 359.97438 * 17 16 14 34 34 H 1.07999 * 119.92216 * 179.97438 * 18 17 16 35 35 H 0.97003 * 119.99610 * 270.00212 * 21 20 19 36 36 H 0.96993 * 120.00139 * 89.99542 * 21 20 19 37 37 H 1.07999 * 119.92492 * 179.71831 * 24 19 18 38 38 H 1.08000 * 120.07508 * 180.25691 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8755 -0.0011 12 6 2.6480 -5.9562 -0.0017 13 8 3.3993 -5.8892 1.2390 14 6 4.3970 -6.7802 1.3988 15 8 4.6331 -7.5906 0.5253 16 6 5.2045 -6.7709 2.6357 17 6 6.2397 -7.6927 2.8043 18 6 6.9895 -7.6788 3.9621 19 6 6.7174 -6.7547 4.9553 20 16 7.6797 -6.7446 6.4312 21 7 8.9603 -5.7263 6.1745 22 8 6.8753 -6.1335 7.4306 23 8 8.2253 -8.0499 6.5634 24 6 5.6895 -5.8419 4.7971 25 6 4.9355 -5.8411 3.6420 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5570 0.8896 29 1 0.9452 -4.9822 -0.8914 30 1 0.9446 -4.9828 0.8886 31 1 3.3215 -5.7953 -0.8434 32 1 2.1820 -6.9375 -0.0916 33 1 6.4523 -8.4154 2.0304 34 1 7.7902 -8.3915 4.0940 35 1 9.7890 -6.0722 5.8079 36 1 8.8815 -4.7840 6.3907 37 1 5.4796 -5.1263 5.5782 38 1 4.1362 -5.1254 3.5180 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815178473.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:05 Heat of formation + Delta-G solvation = -212.522606 kcal Electronic energy + Delta-G solvation = -24594.336118 eV Core-core repulsion = 20527.919254 eV Total energy + Delta-G solvation = -4066.416865 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.82325 -40.01416 -38.74713 -38.36598 -37.53562 -37.00671 -34.96201 -34.08261 -33.10674 -32.30806 -31.53971 -29.06240 -26.25940 -24.58295 -24.11318 -23.55335 -22.27441 -20.61811 -19.50445 -18.98580 -18.72192 -18.32211 -18.19922 -18.00012 -17.88589 -17.11472 -16.60620 -16.36712 -16.20606 -15.90007 -15.53422 -15.41060 -14.75086 -14.71972 -14.57584 -14.09137 -13.96533 -13.73194 -13.30102 -13.27402 -13.25550 -13.18720 -12.94110 -12.71908 -12.53688 -12.42040 -12.31296 -12.05124 -11.84006 -11.78147 -11.30691 -11.29172 -10.91233 -10.69464 -10.29395 -10.26199 -8.33387 -6.45653 -1.00301 -0.58956 0.10364 1.09439 1.40358 1.40865 1.42726 1.54819 2.15372 2.33617 2.41839 2.79188 3.00850 3.02354 3.20435 3.34342 3.65236 3.72590 3.86375 4.05974 4.08058 4.17940 4.36078 4.42154 4.46202 4.58253 4.76640 4.80572 4.83605 4.84118 5.05372 5.15445 5.20348 5.25939 5.53074 5.53746 5.93701 6.38641 6.43220 6.49528 6.77697 7.26070 8.78782 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.012442 B = 0.002543 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.851458 B =11005.985124 C =12732.350080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.982 3.018 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.550 4.550 8 H 0.061 0.939 9 C 0.208 3.792 10 O -0.409 6.409 11 C 0.053 3.947 12 C 0.078 3.922 13 O -0.349 6.349 14 C 0.503 3.497 15 O -0.523 6.523 16 C -0.086 4.086 17 C -0.081 4.081 18 C -0.031 4.031 19 C -0.654 4.654 20 S 2.736 3.264 21 N -1.223 6.223 22 O -0.982 6.982 23 O -0.977 6.977 24 C -0.036 4.036 25 C -0.090 4.090 26 H 0.271 0.729 27 H -0.008 1.008 28 H -0.010 1.010 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.156 0.844 34 H 0.178 0.822 35 H 0.433 0.567 36 H 0.432 0.568 37 H 0.168 0.832 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.434 -14.922 11.094 25.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.587 4.587 8 H 0.079 0.921 9 C 0.133 3.867 10 O -0.329 6.329 11 C -0.024 4.024 12 C 0.005 3.995 13 O -0.265 6.265 14 C 0.349 3.651 15 O -0.414 6.414 16 C -0.088 4.088 17 C -0.099 4.099 18 C -0.050 4.050 19 C -0.738 4.738 20 S 2.820 3.180 21 N -0.901 5.901 22 O -0.972 6.972 23 O -0.967 6.967 24 C -0.055 4.055 25 C -0.109 4.109 26 H 0.080 0.920 27 H 0.010 0.990 28 H 0.008 0.992 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.130 0.870 33 H 0.174 0.826 34 H 0.195 0.805 35 H 0.265 0.735 36 H 0.264 0.736 37 H 0.185 0.815 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 17.168 -15.586 11.578 25.918 hybrid contribution -0.552 1.143 -1.346 1.850 sum 16.616 -14.443 10.233 24.278 Atomic orbital electron populations 1.70060 1.07708 1.28710 1.50392 1.25942 0.95963 1.03339 0.93888 0.85194 0.78420 0.77062 0.78816 1.19371 1.19893 1.18817 1.21374 0.94081 0.90875 1.52397 0.92124 1.19871 0.88549 0.84350 0.93908 1.87858 1.35514 1.14158 1.95345 1.22655 0.94388 0.83292 1.02028 1.23299 0.93131 0.99510 0.83552 1.86632 1.43637 1.54030 1.42197 1.21531 0.78716 0.77772 0.87107 1.90806 1.68413 1.38576 1.43606 1.19585 0.97286 0.99621 0.92283 1.21588 0.92603 0.96911 0.98835 1.21217 0.98103 0.95398 0.90245 1.31615 1.13909 1.05510 1.22799 1.00585 0.72448 0.72496 0.72513 1.52952 1.29403 1.24731 1.83022 1.93599 1.70062 1.77752 1.55744 1.93589 1.78463 1.38913 1.85772 1.21210 0.91474 0.95925 0.96909 1.21804 0.99522 0.96984 0.92541 0.91991 0.99039 0.99217 0.89786 0.92412 0.90612 0.86997 0.82601 0.80457 0.73508 0.73603 0.81489 0.83508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.97 13.29 21.45 0.28 -54.68 16 2 C 0.01 0.42 5.46 84.65 0.46 0.88 16 3 Si 0.98 43.57 29.54 68.60 2.03 45.60 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.55 -32.29 9.43 25.60 0.24 -32.05 16 8 H 0.06 3.54 7.81 -2.91 -0.02 3.51 16 9 C 0.21 11.42 5.69 71.24 0.41 11.83 16 10 O -0.41 -19.53 10.30 -145.57 -1.50 -21.03 16 11 C 0.05 1.86 6.33 71.98 0.46 2.31 16 12 C 0.08 2.33 5.85 71.98 0.42 2.75 16 13 O -0.35 -11.19 9.44 -53.61 -0.51 -11.70 16 14 C 0.50 14.73 7.90 70.33 0.56 15.28 16 15 O -0.52 -16.61 16.14 19.93 0.32 -16.29 16 16 C -0.09 -2.07 5.87 -20.10 -0.12 -2.19 16 17 C -0.08 -1.52 9.60 22.54 0.22 -1.30 16 18 C -0.03 -0.45 9.50 22.23 0.21 -0.24 16 19 C -0.65 -9.78 5.98 22.33 0.13 -9.65 16 20 S 2.74 34.18 6.28 -56.49 -0.35 33.82 16 21 N -1.22 -5.51 9.52 37.02 0.35 -5.16 16 22 O -0.98 -18.91 17.26 -128.00 -2.21 -21.12 16 23 O -0.98 -17.16 17.27 -128.00 -2.21 -19.37 16 24 C -0.04 -0.64 9.50 22.23 0.21 -0.43 16 25 C -0.09 -1.98 9.62 22.54 0.22 -1.77 16 26 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 27 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 28 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 29 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.16 2.61 7.65 -2.91 -0.02 2.59 16 34 H 0.18 1.55 7.60 -2.91 -0.02 1.53 16 35 H 0.43 0.20 8.96 -96.74 -0.87 -0.67 16 36 H 0.43 0.72 8.96 -96.75 -0.87 -0.15 16 37 H 0.17 2.30 7.60 -2.91 -0.02 2.28 16 38 H 0.15 3.42 7.61 -2.91 -0.02 3.40 16 Total: -1.00 -80.80 354.44 -0.99 -81.79 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -0.61 Total: 2.71 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 3.41 Total: -14.56 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: 0.64 Total: -59.84 kcal Atomic # 8 Polarization: -83.41 SS G_CDS: -6.10 Total: -89.52 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 34.18 SS G_CDS: -0.35 Total: 33.82 kcal Total: -80.80 -0.99 -81.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815178473.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.732 kcal (2) G-P(sol) polarization free energy of solvation -80.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds