Wall clock time and date at job start Tue Mar 31 2020 04:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31522 * 120.00244 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99980 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47229 * 89.99965 * 8 6 4 10 10 H 1.48500 * 109.46876 * 209.99805 * 8 6 4 11 11 H 1.48499 * 109.47161 * 329.99530 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.53000 * 109.47114 * 293.94896 * 12 2 1 14 14 H 1.09000 * 109.46550 * 60.00064 * 13 12 2 15 15 O 1.42901 * 109.46928 * 300.00575 * 13 12 2 16 16 C 1.52996 * 109.47000 * 180.02562 * 13 12 2 17 17 N 1.46899 * 109.46798 * 185.00066 * 16 13 12 18 18 C 1.46901 * 111.00076 * 179.97438 * 17 16 13 19 19 C 1.52997 * 109.46384 * 275.05553 * 18 17 16 20 20 C 1.53016 * 109.46301 * 179.84339 * 19 18 17 21 21 C 1.52969 * 109.43395 * 59.78749 * 20 19 18 22 22 C 1.52960 * 109.81624 * 300.29577 * 21 20 19 23 23 C 1.52992 * 109.46427 * 154.99922 * 18 17 16 24 24 O 1.43704 * 109.40366 * 60.39624 * 21 20 19 25 25 C 1.44799 * 104.78893 * 95.49880 * 24 21 20 26 26 C 1.54913 * 101.72805 * 36.06598 * 25 24 21 27 27 O 1.43293 * 109.65254 * 179.71859 * 21 20 19 28 28 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 29 29 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 31 31 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 32 32 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 33 33 H 0.96992 * 120.00038 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 35 35 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 36 36 H 0.96697 * 113.99735 * 299.99403 * 15 13 12 37 37 H 1.08995 * 109.47058 * 304.99907 * 16 13 12 38 38 H 1.08998 * 109.46953 * 65.00454 * 16 13 12 39 39 H 1.00903 * 111.00138 * 56.05087 * 17 16 13 40 40 H 1.09003 * 109.45938 * 35.01852 * 18 17 16 41 41 H 1.09000 * 109.46665 * 299.83649 * 19 18 17 42 42 H 1.08991 * 109.47368 * 59.84378 * 19 18 17 43 43 H 1.08995 * 109.48277 * 299.79657 * 20 19 18 44 44 H 1.09001 * 109.47681 * 179.76823 * 20 19 18 45 45 H 1.09001 * 109.47780 * 299.71039 * 22 21 20 46 46 H 1.08996 * 109.48133 * 179.68172 * 22 21 20 47 47 H 1.08993 * 109.47286 * 300.14983 * 23 18 17 48 48 H 1.09001 * 109.46752 * 60.15502 * 23 18 17 49 49 H 1.09009 * 110.97548 * 277.95859 * 25 24 21 50 50 H 1.08995 * 111.00766 * 154.19405 * 25 24 21 51 51 H 1.08998 * 110.69976 * 206.08028 * 26 25 24 52 52 H 1.08999 * 110.69302 * 82.87295 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 2.7118 4.0020 0.6149 8 14 1.5829 4.1868 3.1382 9 1 2.6604 3.9508 4.1325 10 1 1.4300 5.6464 2.9112 11 1 0.3056 3.6291 3.6507 12 6 1.9954 -0.7660 -1.1377 13 6 1.6315 -2.2426 -0.9704 14 1 0.5472 -2.3474 -0.9323 15 8 2.2010 -2.7391 0.2426 16 6 2.1803 -3.0404 -2.1549 17 7 1.7299 -4.4352 -2.0566 18 6 2.2384 -5.2331 -3.1803 19 6 1.2997 -5.0819 -4.3789 20 6 1.8314 -5.9100 -5.5506 21 6 1.9093 -7.3815 -5.1400 22 6 2.8431 -7.5359 -3.9385 23 6 2.3099 -6.7051 -2.7692 24 8 0.5968 -7.8490 -4.7881 25 6 0.0906 -8.4714 -5.9936 26 6 1.3729 -9.1145 -6.5783 27 8 2.4007 -8.1624 -6.2364 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.0797 1.3445 -0.1083 32 1 1.5610 1.9274 -0.8309 33 1 2.9857 4.9183 0.7765 34 1 1.5611 -0.3871 -2.0628 35 1 3.0797 -0.6610 -1.1757 36 1 3.1653 -2.6770 0.2786 37 1 1.8160 -2.6058 -3.0857 38 1 3.2698 -3.0086 -2.1409 39 1 0.7237 -4.4873 -2.0027 40 1 3.2342 -4.8833 -3.4528 41 1 0.3044 -5.4338 -4.1074 42 1 1.2475 -4.0328 -4.6695 43 1 2.8253 -5.5560 -5.8244 44 1 1.1606 -5.8057 -6.4034 45 1 3.8407 -7.1878 -4.2064 46 1 2.8902 -8.5851 -3.6471 47 1 2.9770 -6.8115 -1.9139 48 1 1.3137 -7.0555 -2.4990 49 1 -0.3178 -7.7257 -6.6758 50 1 -0.6544 -9.2312 -5.7578 51 1 1.2915 -9.2217 -7.6599 52 1 1.5691 -10.0783 -6.1084 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818963511.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:16 Heat of formation + Delta-G solvation = -140.446958 kcal Electronic energy + Delta-G solvation = -28859.179982 eV Core-core repulsion = 24858.353627 eV Total energy + Delta-G solvation = -4000.826355 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.27809 -38.66964 -37.54531 -35.52210 -35.36428 -34.01303 -32.48367 -31.23974 -30.64535 -29.32760 -27.54945 -26.89114 -25.39925 -23.87669 -23.39152 -23.04991 -21.77905 -21.34162 -20.16210 -20.01309 -17.57355 -17.28694 -16.51609 -16.30740 -15.94418 -15.68880 -15.59816 -15.11016 -14.90054 -14.69910 -14.26698 -14.11519 -13.98469 -13.71740 -13.60395 -13.43783 -13.23238 -13.05412 -12.69999 -12.58082 -12.48761 -12.12637 -11.88319 -11.84277 -11.57261 -11.40945 -11.33444 -11.20016 -11.07564 -10.87808 -10.74959 -10.69214 -10.61841 -10.59884 -10.25304 -9.93467 -9.81589 -9.51586 -9.06778 -8.41611 -8.40667 -7.16380 -6.00459 -4.01288 2.93866 3.34727 3.40203 3.44514 3.50329 3.90649 4.08538 4.27331 4.29649 4.44313 4.45275 4.61230 4.72691 4.76798 4.82959 4.91444 4.93482 5.01651 5.06332 5.12570 5.16172 5.21622 5.26820 5.34387 5.38098 5.42598 5.48267 5.54563 5.60593 5.66614 5.70398 5.74628 5.81516 5.83194 6.04322 6.07923 6.12408 6.22372 6.33530 6.45131 6.69403 6.79150 6.94504 7.28658 7.29801 7.35178 7.83217 8.08351 8.19219 8.24902 8.58505 9.06908 9.62877 11.10527 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.038728 B = 0.001791 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.816960 B =15625.634109 C =15695.612282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.529 5.529 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.024 3.976 13 C 0.117 3.883 14 H 0.091 0.909 15 O -0.535 6.535 16 C 0.027 3.973 17 N -0.672 5.672 18 C 0.087 3.913 19 C -0.144 4.144 20 C -0.131 4.131 21 C 0.258 3.742 22 C -0.118 4.118 23 C -0.101 4.101 24 O -0.363 6.363 25 C 0.013 3.987 26 C 0.020 3.980 27 O -0.380 6.380 28 H 0.008 0.992 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.028 0.972 32 H -0.011 1.011 33 H 0.261 0.739 34 H 0.025 0.975 35 H 0.070 0.930 36 H 0.368 0.632 37 H 0.035 0.965 38 H 0.075 0.925 39 H 0.341 0.659 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.071 0.929 49 H 0.074 0.926 50 H 0.108 0.892 51 H 0.098 0.902 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.726 -26.828 -16.676 31.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.253 5.253 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.106 4.106 13 C 0.057 3.943 14 H 0.108 0.892 15 O -0.339 6.339 16 C -0.103 4.103 17 N -0.301 5.301 18 C -0.024 4.024 19 C -0.183 4.183 20 C -0.169 4.169 21 C 0.181 3.819 22 C -0.156 4.156 23 C -0.139 4.139 24 O -0.284 6.284 25 C -0.063 4.063 26 C -0.056 4.056 27 O -0.301 6.301 28 H 0.026 0.974 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.046 0.954 32 H 0.006 0.994 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.088 0.912 36 H 0.214 0.786 37 H 0.053 0.947 38 H 0.093 0.907 39 H 0.160 0.840 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.093 0.907 47 H 0.095 0.905 48 H 0.090 0.910 49 H 0.092 0.908 50 H 0.126 0.874 51 H 0.116 0.884 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.504 -27.099 -15.566 31.351 hybrid contribution -0.563 1.456 -1.247 1.999 sum -3.067 -25.643 -16.813 30.816 Atomic orbital electron populations 1.22233 0.89055 0.99157 1.00629 1.62022 1.06786 1.17352 1.39097 1.19752 0.95269 0.81648 0.96595 1.21178 1.34612 0.96828 1.01677 0.91775 1.25002 0.95371 0.97364 0.97029 1.69963 1.38612 1.11433 1.34068 0.86478 0.78899 0.78308 0.83604 1.20606 1.21394 1.19852 1.22726 1.00518 0.94030 0.93326 1.21853 0.98085 0.90697 0.83678 0.89161 1.86585 1.24869 1.84939 1.37488 1.22764 1.01010 0.88514 0.98045 1.60480 1.16547 1.10075 1.43033 1.21634 0.98102 0.94170 0.88465 1.22215 1.00665 0.99667 0.95757 1.22013 1.02766 0.93415 0.98734 1.23389 0.81793 0.90379 0.86325 1.21834 0.98403 1.01648 0.93729 1.21408 1.02535 0.93069 0.96882 1.89294 1.29709 1.76678 1.32691 1.24372 0.97313 0.97402 0.87250 1.24182 0.86314 0.93419 1.01694 1.88892 1.40509 1.49201 1.51522 0.97378 0.93517 0.90834 0.95378 0.99368 0.92992 0.95646 0.91196 0.78555 0.94732 0.90679 0.84042 0.90578 0.90860 0.91595 0.90222 0.91449 0.90060 0.90739 0.90505 0.91029 0.90789 0.87378 0.88378 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 9.16 60.06 0.55 1.31 16 2 N -0.53 -11.62 4.62 -244.36 -1.13 -12.75 16 3 C 0.19 5.10 4.72 -4.97 -0.02 5.08 16 4 C -0.50 -14.46 8.52 -34.44 -0.29 -14.76 16 5 H 0.06 1.84 7.10 -52.48 -0.37 1.46 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 8 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.02 0.42 4.62 -3.82 -0.02 0.40 16 13 C 0.12 1.70 3.02 -26.73 -0.08 1.62 16 14 H 0.09 1.35 6.47 -51.93 -0.34 1.01 16 15 O -0.54 -8.67 13.15 -35.23 -0.46 -9.13 16 16 C 0.03 0.31 5.12 -3.83 -0.02 0.29 16 17 N -0.67 -7.22 6.20 -106.73 -0.66 -7.88 16 18 C 0.09 0.80 2.46 -67.72 -0.17 0.63 16 19 C -0.14 -1.24 5.03 -26.72 -0.13 -1.37 16 20 C -0.13 -1.09 5.29 -26.74 -0.14 -1.23 16 21 C 0.26 2.25 1.03 -26.77 -0.03 2.22 16 22 C -0.12 -0.99 5.34 -26.74 -0.14 -1.14 16 23 C -0.10 -0.91 5.39 -26.72 -0.14 -1.05 16 24 O -0.36 -3.24 9.67 -59.04 -0.57 -3.81 16 25 C 0.01 0.08 7.91 38.17 0.30 0.38 16 26 C 0.02 0.12 8.08 38.17 0.31 0.43 16 27 O -0.38 -3.43 10.87 -59.04 -0.64 -4.07 16 28 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.05 0.82 6.30 -51.93 -0.33 0.49 16 30 H 0.07 1.59 6.86 -51.93 -0.36 1.24 16 31 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 32 H -0.01 -0.32 8.12 -51.93 -0.42 -0.75 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 35 H 0.07 1.21 7.93 -51.93 -0.41 0.80 16 36 H 0.37 5.04 9.04 45.56 0.41 5.46 16 37 H 0.03 0.38 7.43 -51.93 -0.39 0.00 16 38 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 39 H 0.34 3.63 8.47 -39.29 -0.33 3.30 16 40 H 0.08 0.72 7.80 -51.93 -0.40 0.32 16 41 H 0.07 0.68 7.68 -51.93 -0.40 0.28 16 42 H 0.07 0.58 7.45 -51.93 -0.39 0.19 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.07 0.71 7.69 -51.93 -0.40 0.31 16 49 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 50 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 52 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 401.97 15.07 6.06 6.06 Total: -1.00 -32.64 401.97 -10.56 -43.19 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -8.74 Total: 3.50 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -0.13 Total: -5.76 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -1.05 Total: -46.96 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -1.68 Total: -17.00 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.64 -10.56 -43.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818963511.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.252 kcal (2) G-P(sol) polarization free energy of solvation -32.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds