Wall clock time and date at job start Tue Mar 31 2020 04:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46901 * 111.00243 * 2 1 4 4 C 1.50701 * 109.46921 * 293.95400 * 3 2 1 5 5 H 1.07998 * 120.00129 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99861 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47432 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46890 * 120.00210 * 8 6 4 11 11 H 1.48501 * 109.47062 * 240.00257 * 8 6 4 12 12 C 1.46906 * 111.00136 * 123.95472 * 2 1 3 13 13 C 1.53003 * 109.47132 * 66.04414 * 12 2 1 14 14 H 1.08999 * 109.47139 * 305.00070 * 13 12 2 15 15 O 1.42903 * 109.46910 * 65.00194 * 13 12 2 16 16 C 1.52995 * 109.46886 * 184.99996 * 13 12 2 17 17 N 1.46900 * 109.46980 * 179.97438 * 16 13 12 18 18 C 1.46903 * 111.00097 * 180.02562 * 17 16 13 19 19 C 1.52998 * 109.46996 * 180.02562 * 18 17 16 20 20 H 1.08994 * 110.85930 * 59.29838 * 19 18 17 21 21 C 1.54951 * 110.96591 * 183.08190 * 19 18 17 22 22 O 1.44312 * 103.08796 * 153.46025 * 21 19 18 23 23 C 1.42975 * 107.09771 * 338.58571 * 22 21 19 24 24 C 1.53912 * 110.16389 * 238.62087 * 23 22 21 25 25 C 1.54968 * 104.11712 * 216.63092 * 24 23 22 26 26 C 1.54915 * 102.79084 * 37.65642 * 25 24 23 27 27 C 1.53538 * 110.36771 * 120.74284 * 23 22 21 28 28 O 1.43405 * 109.28608 * 359.52360 * 23 22 21 29 29 H 1.08999 * 109.47439 * 60.00146 * 1 2 3 30 30 H 1.08997 * 109.47257 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46808 * 299.99830 * 1 2 3 32 32 H 1.09002 * 109.47401 * 173.95428 * 3 2 1 33 33 H 1.09001 * 109.46874 * 53.95440 * 3 2 1 34 34 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47257 * 186.04513 * 12 2 1 36 36 H 1.09006 * 109.46871 * 306.04551 * 12 2 1 37 37 H 0.96701 * 113.99748 * 60.00230 * 15 13 12 38 38 H 1.08999 * 109.47292 * 299.99981 * 16 13 12 39 39 H 1.09007 * 109.47541 * 60.00079 * 16 13 12 40 40 H 1.00896 * 110.99967 * 56.05086 * 17 16 13 41 41 H 1.09000 * 109.46953 * 299.99981 * 18 17 16 42 42 H 1.08997 * 109.47251 * 59.99794 * 18 17 16 43 43 H 1.09000 * 110.69448 * 271.86241 * 21 19 18 44 44 H 1.09001 * 110.69236 * 35.06288 * 21 19 18 45 45 H 1.09005 * 110.50164 * 335.28815 * 24 23 22 46 46 H 1.08997 * 110.50517 * 97.97317 * 24 23 22 47 47 H 1.08997 * 110.75051 * 279.32736 * 25 24 23 48 48 H 1.09009 * 110.90354 * 156.05187 * 25 24 23 49 49 H 1.09002 * 110.48889 * 203.57299 * 26 25 24 50 50 H 1.09000 * 110.59957 * 80.98657 * 26 25 24 51 51 H 1.09000 * 110.06090 * 239.00422 * 27 23 22 52 52 H 1.09004 * 110.06037 * 0.44849 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0739 1.5115 -2.0485 6 6 2.0268 3.3495 -1.5285 7 7 2.7120 4.0018 -0.6150 8 14 1.5818 4.1872 -3.1377 9 1 0.8136 3.2449 -3.9905 10 1 0.7543 5.3882 -2.8582 11 1 2.8232 4.5947 -3.8435 12 6 1.9954 -0.7660 1.1376 13 6 1.6314 -2.2427 0.9704 14 1 0.5531 -2.3389 0.8433 15 8 2.2956 -2.7696 -0.1800 16 6 2.0699 -3.0199 2.2131 17 7 1.7199 -4.4375 2.0528 18 6 2.1264 -5.2166 3.2301 19 6 1.7467 -6.6846 3.0261 20 1 2.2320 -7.0913 2.1390 21 6 2.0906 -7.5257 4.2812 22 8 1.1506 -8.6184 4.2099 23 6 0.0663 -8.1869 3.3838 24 6 -1.2570 -8.2551 4.1668 25 6 -2.2977 -8.7076 3.1115 26 6 -1.4996 -9.7232 2.2562 27 6 -0.0833 -9.1154 2.1702 28 8 0.3085 -6.8421 2.9486 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 3.0797 1.3444 0.1082 33 1 1.5611 1.9273 0.8309 34 1 2.9866 4.9179 -0.7770 35 1 3.0797 -0.6611 1.1756 36 1 1.5611 -0.3872 2.0628 37 1 3.2601 -2.7167 -0.1359 38 1 3.1482 -2.9236 2.3401 39 1 1.5634 -2.6179 3.0907 40 1 2.1251 -4.8170 1.2103 41 1 3.2051 -5.1359 3.3643 42 1 1.6203 -4.8294 4.1144 43 1 3.1149 -7.8948 4.2287 44 1 1.9360 -6.9433 5.1894 45 1 -1.1870 -8.9867 4.9719 46 1 -1.5172 -7.2737 4.5632 47 1 -2.6239 -7.8633 2.5041 48 1 -3.1506 -9.1905 3.5885 49 1 -1.9375 -9.8120 1.2620 50 1 -1.4680 -10.6962 2.7464 51 1 0.0233 -8.5449 1.2476 52 1 0.6665 -9.9057 2.2094 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819204270.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:23 Heat of formation + Delta-G solvation = -140.112769 kcal Electronic energy + Delta-G solvation = -28529.683915 eV Core-core repulsion = 24528.872051 eV Total energy + Delta-G solvation = -4000.811864 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.14561 -38.40837 -37.07179 -36.09264 -35.41588 -34.69051 -32.52251 -31.33772 -29.44972 -29.19672 -27.33319 -26.92630 -26.14147 -24.73712 -23.09882 -22.12258 -21.26957 -21.11167 -20.68463 -20.15485 -17.74178 -16.99895 -16.58982 -16.38508 -16.15868 -15.85001 -15.62492 -15.04642 -14.84693 -14.75719 -14.32439 -14.26217 -14.14418 -13.72161 -13.50804 -13.46374 -13.27823 -12.87656 -12.64798 -12.46932 -12.23094 -11.98808 -11.86038 -11.77108 -11.53964 -11.47860 -11.42530 -11.30219 -11.10609 -10.99198 -10.88312 -10.75401 -10.65481 -10.42387 -10.27049 -10.01162 -9.85207 -9.61446 -9.10161 -8.57922 -8.43132 -7.18211 -6.02083 -4.02764 3.04473 3.32053 3.39246 3.45177 3.55534 3.67010 4.15618 4.19354 4.34292 4.44440 4.45734 4.57884 4.63868 4.68884 4.84320 4.93147 5.03605 5.06448 5.09262 5.11327 5.17098 5.25892 5.30843 5.32702 5.36516 5.37479 5.50606 5.52992 5.55631 5.61350 5.64842 5.68521 5.72325 5.73843 5.84780 5.98456 6.06353 6.21199 6.35034 6.43319 6.76064 6.80412 6.88408 7.21806 7.27795 7.33818 7.81699 7.95258 8.10774 8.21730 8.56724 9.05746 9.61467 11.08964 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.025150 B = 0.001839 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.060430 B =15225.681718 C =15778.355981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.530 5.530 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.065 0.935 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.025 3.975 13 C 0.114 3.886 14 H 0.105 0.895 15 O -0.546 6.546 16 C 0.028 3.972 17 N -0.676 5.676 18 C 0.067 3.933 19 C 0.050 3.950 20 H 0.083 0.917 21 C 0.025 3.975 22 O -0.377 6.377 23 C 0.248 3.752 24 C -0.127 4.127 25 C -0.123 4.123 26 C -0.121 4.121 27 C -0.147 4.147 28 O -0.342 6.342 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.009 0.991 32 H 0.028 0.972 33 H -0.011 1.011 34 H 0.260 0.740 35 H 0.068 0.932 36 H 0.029 0.971 37 H 0.365 0.635 38 H 0.032 0.968 39 H 0.079 0.921 40 H 0.348 0.652 41 H 0.047 0.953 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.068 0.932 51 H 0.083 0.917 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.674 -27.567 11.866 30.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.254 5.254 3 C 0.067 3.933 4 C -0.542 4.542 5 H 0.083 0.917 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.105 4.105 13 C 0.054 3.946 14 H 0.123 0.877 15 O -0.349 6.349 16 C -0.102 4.102 17 N -0.308 5.308 18 C -0.063 4.063 19 C -0.008 4.008 20 H 0.101 0.899 21 C -0.052 4.052 22 O -0.298 6.298 23 C 0.171 3.829 24 C -0.165 4.165 25 C -0.161 4.161 26 C -0.158 4.158 27 C -0.185 4.185 28 O -0.262 6.262 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.028 0.972 32 H 0.046 0.954 33 H 0.007 0.993 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.211 0.789 38 H 0.050 0.950 39 H 0.097 0.903 40 H 0.168 0.832 41 H 0.065 0.935 42 H 0.100 0.900 43 H 0.117 0.883 44 H 0.096 0.904 45 H 0.103 0.897 46 H 0.100 0.900 47 H 0.093 0.907 48 H 0.090 0.910 49 H 0.089 0.911 50 H 0.086 0.914 51 H 0.102 0.898 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.846 -27.677 11.512 30.222 hybrid contribution 1.340 1.211 0.124 1.810 sum -2.506 -26.466 11.635 29.020 Atomic orbital electron populations 1.22256 0.88917 0.99320 1.00727 1.62031 1.06910 1.17412 1.39087 1.19753 0.95221 0.81642 0.96656 1.21216 1.34515 0.96820 1.01680 0.91720 1.25006 0.95369 0.97379 0.97061 1.69970 1.38634 1.11388 1.34069 0.86429 0.78140 0.79270 0.83521 1.19596 1.21152 1.21035 1.22705 1.00339 0.93868 0.93545 1.22008 0.98395 0.90668 0.83527 0.87711 1.86625 1.22709 1.83819 1.41764 1.22698 0.98425 0.88746 1.00286 1.60244 1.64317 1.01930 1.04311 1.21938 0.98127 0.90588 0.95660 1.23969 0.82531 0.96728 0.97570 0.89920 1.24208 0.94452 0.88293 0.98265 1.88881 1.32853 1.37616 1.70468 1.23883 0.88359 0.81911 0.88760 1.22630 0.92643 1.02990 0.98236 1.22469 0.97308 0.99197 0.97098 1.22301 0.94458 0.98547 1.00542 1.22763 0.98529 0.99294 0.97893 1.89430 1.21219 1.28772 1.86807 0.90807 0.93354 0.97209 0.95432 0.99294 0.93037 0.91332 0.95326 0.78873 0.94997 0.90273 0.83236 0.93521 0.89951 0.88301 0.90419 0.89668 0.90032 0.90695 0.91005 0.91091 0.91370 0.89811 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.17 60.06 0.55 1.29 16 2 N -0.53 -11.62 4.70 -244.36 -1.15 -12.77 16 3 C 0.19 5.08 4.72 -4.97 -0.02 5.05 16 4 C -0.50 -14.40 8.52 -34.44 -0.29 -14.69 16 5 H 0.06 1.85 7.10 -52.49 -0.37 1.48 16 6 C 0.05 1.51 5.46 -17.82 -0.10 1.42 16 7 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 8 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.03 0.44 4.60 -3.82 -0.02 0.42 16 13 C 0.11 1.64 3.20 -26.73 -0.09 1.55 16 14 H 0.11 1.67 6.26 -51.93 -0.33 1.35 16 15 O -0.55 -8.18 12.62 -35.23 -0.44 -8.63 16 16 C 0.03 0.32 5.39 -3.83 -0.02 0.30 16 17 N -0.68 -7.27 6.48 -113.78 -0.74 -8.01 16 18 C 0.07 0.56 5.46 -3.82 -0.02 0.54 16 19 C 0.05 0.43 3.72 -25.70 -0.10 0.33 16 20 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 21 C 0.02 0.19 7.55 38.19 0.29 0.47 16 22 O -0.38 -3.70 10.78 -59.03 -0.64 -4.34 16 23 C 0.25 2.40 1.37 -25.98 -0.04 2.36 16 24 C -0.13 -1.09 6.30 -25.22 -0.16 -1.25 16 25 C -0.12 -0.92 6.91 -24.68 -0.17 -1.09 16 26 C -0.12 -0.86 6.84 -25.01 -0.17 -1.04 16 27 C -0.15 -1.25 6.43 -25.74 -0.17 -1.42 16 28 O -0.34 -3.80 10.58 -59.03 -0.62 -4.42 16 29 H 0.07 1.60 6.86 -51.93 -0.36 1.24 16 30 H 0.05 0.86 6.21 -51.93 -0.32 0.54 16 31 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16 33 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 36 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 37 H 0.37 4.33 9.05 45.56 0.41 4.74 16 38 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 40 H 0.35 3.71 8.12 -39.29 -0.32 3.39 16 41 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.53 8.03 -51.93 -0.42 0.11 16 45 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 46 H 0.08 0.74 8.06 -51.93 -0.42 0.32 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 49 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 50 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.08 0.76 7.95 -51.93 -0.41 0.34 16 52 H 0.08 0.64 7.96 -51.93 -0.41 0.22 16 LS Contribution 408.59 15.07 6.16 6.16 Total: -1.00 -32.72 408.59 -11.05 -43.78 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -8.82 Total: 3.32 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -0.52 Total: -5.75 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -1.15 Total: -47.02 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -1.71 Total: -17.39 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.72 -11.05 -43.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819204270.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.336 kcal (2) G-P(sol) polarization free energy of solvation -32.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds