Wall clock time and date at job start Tue Mar 31 2020 04:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 111.00054 * 2 1 4 4 C 1.50703 * 109.47080 * 66.04249 * 3 2 1 5 5 H 1.08002 * 120.00066 * 0.02562 * 4 3 2 6 6 C 1.37882 * 120.00021 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99526 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00090 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47300 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47376 * 119.99883 * 8 6 4 11 11 H 1.48504 * 109.47004 * 240.00191 * 8 6 4 12 12 C 1.46898 * 111.00164 * 236.04265 * 2 1 3 13 13 C 1.53000 * 109.47336 * 293.95413 * 12 2 1 14 14 H 1.08993 * 109.46688 * 59.99714 * 13 12 2 15 15 O 1.42901 * 109.47027 * 299.99891 * 13 12 2 16 16 C 1.53001 * 109.47057 * 179.97438 * 13 12 2 17 17 N 1.46899 * 109.46968 * 184.99676 * 16 13 12 18 18 C 1.46896 * 110.99996 * 179.97438 * 17 16 13 19 19 C 1.53000 * 109.47283 * 180.02562 * 18 17 16 20 20 H 1.09002 * 110.85585 * 59.30028 * 19 18 17 21 21 C 1.54952 * 110.97050 * 183.08559 * 19 18 17 22 22 O 1.44295 * 103.08857 * 153.49804 * 21 19 18 23 23 C 1.42979 * 107.10353 * 338.59047 * 22 21 19 24 24 C 1.53921 * 110.16095 * 238.62354 * 23 22 21 25 25 C 1.54975 * 104.11467 * 216.62457 * 24 23 22 26 26 C 1.54920 * 102.78815 * 37.65208 * 25 24 23 27 27 C 1.53534 * 110.37565 * 120.74322 * 23 22 21 28 28 O 1.43365 * 109.25969 * 359.48483 * 23 22 21 29 29 H 1.09005 * 109.46640 * 183.95834 * 1 2 3 30 30 H 1.09002 * 109.47184 * 303.95275 * 1 2 3 31 31 H 1.08991 * 109.46845 * 63.95538 * 1 2 3 32 32 H 1.08996 * 109.47196 * 186.04590 * 3 2 1 33 33 H 1.08996 * 109.47116 * 306.04754 * 3 2 1 34 34 H 0.97000 * 119.99611 * 179.97438 * 7 6 4 35 35 H 1.09003 * 109.46955 * 173.95601 * 12 2 1 36 36 H 1.09001 * 109.46743 * 53.95788 * 12 2 1 37 37 H 0.96703 * 114.00035 * 299.99913 * 15 13 12 38 38 H 1.09005 * 109.47091 * 65.00548 * 16 13 12 39 39 H 1.08994 * 109.47338 * 304.99983 * 16 13 12 40 40 H 1.00908 * 110.99779 * 56.04969 * 17 16 13 41 41 H 1.09000 * 109.47141 * 60.00444 * 18 17 16 42 42 H 1.09002 * 109.47146 * 300.00303 * 18 17 16 43 43 H 1.09001 * 110.68991 * 271.90152 * 21 19 18 44 44 H 1.08999 * 110.69211 * 35.09910 * 21 19 18 45 45 H 1.08995 * 110.50169 * 335.28028 * 24 23 22 46 46 H 1.08997 * 110.50356 * 97.97059 * 24 23 22 47 47 H 1.08995 * 110.74912 * 279.33048 * 25 24 23 48 48 H 1.08999 * 110.90740 * 156.04997 * 25 24 23 49 49 H 1.09001 * 110.48272 * 203.56724 * 26 25 24 50 50 H 1.09005 * 110.59648 * 80.98867 * 26 25 24 51 51 H 1.08998 * 110.05745 * 239.00796 * 27 23 22 52 52 H 1.09004 * 110.05315 * 0.44614 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0745 1.5113 2.0488 6 6 2.0267 3.3496 1.5285 7 7 2.7119 4.0019 0.6149 8 14 1.5828 4.1869 3.1382 9 1 0.8155 3.2443 3.9914 10 1 2.8246 4.5945 3.8430 11 1 0.7548 5.3878 2.8596 12 6 1.9955 -0.7660 -1.1375 13 6 1.6315 -2.2427 -0.9702 14 1 0.5473 -2.3475 -0.9322 15 8 2.2009 -2.7391 0.2428 16 6 2.1793 -3.0404 -2.1554 17 7 1.7289 -4.4351 -2.0569 18 6 2.2365 -5.2328 -3.1811 19 6 1.7471 -6.6760 -3.0444 20 1 0.6579 -6.7172 -3.0353 21 6 2.3263 -7.5671 -4.1720 22 8 2.3330 -8.8823 -3.5783 23 6 2.3089 -8.7035 -2.1600 24 6 3.5409 -9.3686 -1.5205 25 6 3.0083 -9.9449 -0.1841 26 6 1.5923 -10.4440 -0.5661 27 6 1.0705 -9.3814 -1.5566 28 8 2.2996 -7.3016 -1.8602 29 1 -0.3633 -1.0253 0.0709 30 1 -0.3634 0.5740 0.8525 31 1 -0.3633 0.4512 -0.9232 32 1 3.0797 1.3444 -0.1082 33 1 1.5611 1.9273 -0.8309 34 1 2.9858 4.9182 0.7766 35 1 3.0798 -0.6611 -1.1755 36 1 1.5611 -0.3873 -2.0627 37 1 3.1653 -2.6771 0.2788 38 1 3.2688 -3.0087 -2.1421 39 1 1.8144 -2.6055 -3.0858 40 1 0.7227 -4.4872 -2.0022 41 1 3.3264 -5.2164 -3.1755 42 1 1.8715 -4.8131 -4.1185 43 1 1.6814 -7.5443 -5.0505 44 1 3.3388 -7.2549 -4.4280 45 1 3.9170 -10.1685 -2.1582 46 1 4.3200 -8.6296 -1.3338 47 1 2.9511 -9.1665 0.5766 48 1 3.6300 -10.7723 0.1580 49 1 0.9533 -10.4899 0.3158 50 1 1.6468 -11.4204 -1.0477 51 1 0.4614 -8.6467 -1.0302 52 1 0.4848 -9.8577 -2.3429 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819204271.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:25 Heat of formation + Delta-G solvation = -138.357972 kcal Electronic energy + Delta-G solvation = -28547.459603 eV Core-core repulsion = 24546.723833 eV Total energy + Delta-G solvation = -4000.735770 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.13851 -38.31007 -37.06404 -36.08538 -35.36023 -34.68169 -32.50316 -31.33747 -29.38854 -29.18006 -27.33036 -26.92608 -26.13119 -24.70484 -23.13170 -22.15358 -21.27679 -21.09201 -20.67447 -20.13094 -17.72414 -16.97059 -16.54921 -16.42597 -16.11142 -15.66326 -15.59894 -15.06169 -14.88970 -14.66840 -14.35614 -14.27264 -14.13646 -13.69067 -13.49595 -13.41339 -13.31443 -12.88038 -12.62535 -12.52535 -12.19477 -11.95271 -11.83703 -11.73161 -11.52804 -11.48110 -11.42037 -11.29195 -11.10411 -10.97620 -10.87582 -10.72608 -10.64223 -10.41516 -10.27988 -9.95633 -9.83959 -9.53643 -9.07746 -8.54846 -8.43046 -7.18308 -6.01952 -4.02621 3.05130 3.32272 3.39550 3.45446 3.56066 3.67236 4.16746 4.20865 4.34726 4.44469 4.45171 4.57212 4.65110 4.75430 4.87867 4.90175 5.03926 5.07967 5.09321 5.12305 5.18109 5.27454 5.32011 5.34329 5.37897 5.38918 5.52906 5.55701 5.57273 5.62598 5.63067 5.67907 5.70493 5.73876 5.86420 6.00466 6.06305 6.20540 6.30368 6.41382 6.75055 6.77601 6.89536 7.15772 7.28131 7.33364 7.82084 8.06845 8.17736 8.23225 8.56822 9.05898 9.61589 11.09091 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.024142 B = 0.001856 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.514137 B =15082.750401 C =15679.884684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.529 5.529 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.065 0.935 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.286 1.286 12 C 0.024 3.976 13 C 0.118 3.882 14 H 0.091 0.909 15 O -0.534 6.534 16 C 0.027 3.973 17 N -0.670 5.670 18 C 0.066 3.934 19 C 0.050 3.950 20 H 0.082 0.918 21 C 0.025 3.975 22 O -0.377 6.377 23 C 0.248 3.752 24 C -0.127 4.127 25 C -0.123 4.123 26 C -0.121 4.121 27 C -0.147 4.147 28 O -0.340 6.340 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.007 0.993 32 H 0.028 0.972 33 H -0.011 1.011 34 H 0.260 0.740 35 H 0.070 0.930 36 H 0.026 0.974 37 H 0.369 0.631 38 H 0.076 0.924 39 H 0.035 0.965 40 H 0.341 0.659 41 H 0.083 0.917 42 H 0.046 0.954 43 H 0.098 0.902 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.067 0.933 51 H 0.083 0.917 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.202 -27.828 -11.040 29.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.253 5.253 3 C 0.067 3.933 4 C -0.542 4.542 5 H 0.083 0.917 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.106 4.106 13 C 0.058 3.942 14 H 0.108 0.892 15 O -0.338 6.338 16 C -0.103 4.103 17 N -0.301 5.301 18 C -0.063 4.063 19 C -0.008 4.008 20 H 0.100 0.900 21 C -0.052 4.052 22 O -0.298 6.298 23 C 0.171 3.829 24 C -0.165 4.165 25 C -0.161 4.161 26 C -0.158 4.158 27 C -0.185 4.185 28 O -0.260 6.260 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.025 0.975 32 H 0.046 0.954 33 H 0.006 0.994 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.044 0.956 37 H 0.215 0.785 38 H 0.095 0.905 39 H 0.053 0.947 40 H 0.159 0.841 41 H 0.101 0.899 42 H 0.064 0.936 43 H 0.116 0.884 44 H 0.096 0.904 45 H 0.103 0.897 46 H 0.100 0.900 47 H 0.094 0.906 48 H 0.090 0.910 49 H 0.089 0.911 50 H 0.086 0.914 51 H 0.102 0.898 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.001 -28.265 -9.969 29.989 hybrid contribution -0.522 1.633 -1.132 2.055 sum -1.523 -26.632 -11.102 28.893 Atomic orbital electron populations 1.22246 0.89035 0.99572 1.00316 1.62004 1.06805 1.17360 1.39097 1.19751 0.95279 0.81636 0.96624 1.21218 1.34553 0.96798 1.01671 0.91705 1.25008 0.95358 0.97392 0.97058 1.69972 1.38619 1.11372 1.34090 0.86427 0.78153 0.79240 0.83533 1.19593 1.21004 1.21184 1.22729 1.00557 0.93956 0.93332 1.21827 0.98085 0.90686 0.83632 0.89166 1.86595 1.24916 1.84915 1.37336 1.22760 1.01312 0.87949 0.98251 1.60263 1.16348 1.10261 1.43201 1.21946 1.01554 0.90163 0.92662 1.23961 0.98605 0.94086 0.84136 0.90031 1.24203 1.02089 0.82107 0.96828 1.88878 1.95414 1.26911 1.18645 1.23883 0.95463 0.83066 0.80518 1.22629 0.96481 1.00449 0.96921 1.22470 0.96049 1.00707 0.96848 1.22300 0.96719 0.98065 0.98761 1.22756 0.97107 0.99135 0.99455 1.89438 1.83532 1.16840 1.36221 0.93480 0.90672 0.97464 0.95364 0.99363 0.93037 0.91163 0.95608 0.78497 0.90509 0.94663 0.84134 0.89865 0.93604 0.88354 0.90411 0.89698 0.89990 0.90631 0.91008 0.91099 0.91393 0.89841 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.14 60.06 0.55 1.29 16 2 N -0.53 -11.55 4.62 -244.37 -1.13 -12.68 16 3 C 0.19 5.06 4.72 -4.97 -0.02 5.04 16 4 C -0.50 -14.38 8.46 -34.44 -0.29 -14.67 16 5 H 0.06 1.85 7.12 -52.49 -0.37 1.48 16 6 C 0.05 1.51 5.46 -17.82 -0.10 1.42 16 7 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 8 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 C 0.02 0.42 4.62 -3.83 -0.02 0.40 16 13 C 0.12 1.70 3.01 -26.73 -0.08 1.62 16 14 H 0.09 1.33 6.55 -51.93 -0.34 0.99 16 15 O -0.53 -8.77 13.15 -35.23 -0.46 -9.23 16 16 C 0.03 0.30 5.32 -3.82 -0.02 0.28 16 17 N -0.67 -7.14 6.43 -113.78 -0.73 -7.87 16 18 C 0.07 0.56 5.46 -3.83 -0.02 0.54 16 19 C 0.05 0.43 3.71 -25.70 -0.10 0.33 16 20 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 21 C 0.02 0.19 7.55 38.19 0.29 0.47 16 22 O -0.38 -3.72 10.78 -59.03 -0.64 -4.36 16 23 C 0.25 2.42 1.37 -25.97 -0.04 2.38 16 24 C -0.13 -1.11 6.30 -25.21 -0.16 -1.27 16 25 C -0.12 -0.94 6.91 -24.68 -0.17 -1.11 16 26 C -0.12 -0.88 6.84 -25.01 -0.17 -1.05 16 27 C -0.15 -1.26 6.43 -25.75 -0.17 -1.42 16 28 O -0.34 -3.81 10.58 -59.03 -0.62 -4.44 16 29 H 0.05 0.82 6.47 -51.93 -0.34 0.49 16 30 H 0.07 1.62 6.76 -51.93 -0.35 1.27 16 31 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 33 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 34 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 35 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 36 H 0.03 0.44 8.12 -51.93 -0.42 0.01 16 37 H 0.37 5.16 9.05 45.56 0.41 5.57 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.34 3.43 8.73 -39.29 -0.34 3.09 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.53 8.03 -51.93 -0.42 0.11 16 45 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 46 H 0.08 0.76 8.06 -51.93 -0.42 0.34 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 50 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.08 0.76 7.96 -51.93 -0.41 0.34 16 52 H 0.08 0.64 7.96 -51.93 -0.41 0.22 16 LS Contribution 409.76 15.07 6.17 6.17 Total: -1.00 -32.96 409.76 -11.07 -44.03 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -8.87 Total: 3.47 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -0.51 Total: -5.76 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: -1.12 Total: -46.79 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -1.72 Total: -18.03 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.96 -11.07 -44.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819204271.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.326 kcal (2) G-P(sol) polarization free energy of solvation -32.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds