Wall clock time and date at job start Tue Mar 31 2020 04:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46897 * 111.00290 * 2 1 4 4 C 1.50699 * 109.46938 * 66.04507 * 3 2 1 5 5 H 1.07999 * 120.00181 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99569 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00388 * 0.02562 * 6 4 3 8 8 Si 1.86808 * 119.99819 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.46891 * 180.02562 * 8 6 4 10 10 H 1.48496 * 109.46784 * 300.00071 * 8 6 4 11 11 H 1.48492 * 109.47162 * 60.00088 * 8 6 4 12 12 C 1.46905 * 110.99532 * 236.04622 * 2 1 3 13 13 C 1.53000 * 109.46869 * 199.76862 * 12 2 1 14 14 H 1.09001 * 109.47239 * 302.15751 * 13 12 2 15 15 O 1.42903 * 109.47326 * 62.15991 * 13 12 2 16 16 C 1.53001 * 109.47454 * 182.16009 * 13 12 2 17 17 N 1.46897 * 109.47574 * 180.02562 * 16 13 12 18 18 C 1.46897 * 111.00103 * 179.97438 * 17 16 13 19 19 C 1.52993 * 109.47092 * 179.97438 * 18 17 16 20 20 H 1.09006 * 110.63041 * 305.69626 * 19 18 17 21 21 C 1.54503 * 110.71081 * 182.58846 * 19 18 17 22 22 O 1.44064 * 105.07636 * 219.92409 * 21 19 18 23 23 C 1.43040 * 106.89269 * 358.97392 * 22 21 19 24 24 C 1.53663 * 110.68503 * 263.77292 * 23 22 21 25 25 C 1.55030 * 104.04571 * 215.63849 * 24 23 22 26 26 C 1.54941 * 102.82520 * 37.42476 * 25 24 23 27 27 C 1.53259 * 110.93585 * 144.86261 * 23 22 21 28 28 O 1.43859 * 107.27556 * 23.97514 * 23 22 21 29 29 H 1.08997 * 109.47424 * 54.96313 * 1 2 3 30 30 H 1.08998 * 109.47402 * 174.96766 * 1 2 3 31 31 H 1.09004 * 109.46588 * 294.96280 * 1 2 3 32 32 H 1.08997 * 109.46967 * 306.04553 * 3 2 1 33 33 H 1.09002 * 109.47001 * 186.04731 * 3 2 1 34 34 H 0.97001 * 119.99681 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.47179 * 319.76453 * 12 2 1 36 36 H 1.08997 * 109.46984 * 79.76927 * 12 2 1 37 37 H 0.96698 * 114.00107 * 59.99637 * 15 13 12 38 38 H 1.09001 * 109.46687 * 300.00080 * 16 13 12 39 39 H 1.08994 * 109.47163 * 59.99379 * 16 13 12 40 40 H 1.00900 * 110.99313 * 303.95013 * 17 16 13 41 41 H 1.09001 * 109.46831 * 299.99981 * 18 17 16 42 42 H 1.09005 * 109.47243 * 59.99462 * 18 17 16 43 43 H 1.09000 * 110.31852 * 338.82023 * 21 19 18 44 44 H 1.09003 * 110.32605 * 100.91933 * 21 19 18 45 45 H 1.08994 * 110.51123 * 334.28273 * 24 23 22 46 46 H 1.09006 * 110.50875 * 96.99531 * 24 23 22 47 47 H 1.08995 * 110.74096 * 279.08692 * 25 24 23 48 48 H 1.08997 * 110.89472 * 155.82876 * 25 24 23 49 49 H 1.08995 * 110.48097 * 203.72401 * 26 25 24 50 50 H 1.09000 * 110.48693 * 81.08373 * 26 25 24 51 51 H 1.08998 * 110.07421 * 240.04534 * 27 23 22 52 52 H 1.09000 * 110.07564 * 1.59228 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0747 1.5112 2.0488 6 6 2.0278 3.3490 1.5288 7 7 2.7130 4.0014 0.6153 8 14 1.5841 4.1864 3.1387 9 1 2.1162 5.5728 3.1385 10 1 0.1069 4.2237 3.2864 11 1 2.1757 3.4286 4.2703 12 6 1.9954 -0.7660 -1.1377 13 6 3.4455 -1.1650 -0.8566 14 1 4.0400 -0.2696 -0.6749 15 8 3.4925 -2.0098 0.2950 16 6 4.0109 -1.9162 -2.0636 17 7 5.4030 -2.2998 -1.7936 18 6 5.9797 -3.0254 -2.9332 19 6 7.4269 -3.4067 -2.6155 20 1 8.0014 -2.5264 -2.3268 21 6 8.0825 -4.1155 -3.8216 22 8 8.8726 -5.1755 -3.2491 23 6 8.7204 -5.0872 -1.8296 24 6 9.8843 -4.3005 -1.2069 25 6 10.1332 -5.0079 0.1500 26 6 9.8990 -6.5007 -0.1924 27 6 8.7211 -6.4804 -1.1910 28 8 7.4748 -4.4142 -1.5745 29 1 -0.3634 0.5900 -0.8414 30 1 -0.3634 -1.0237 -0.0901 31 1 -0.3633 0.4337 0.9317 32 1 1.5612 1.9273 -0.8309 33 1 3.0798 1.3443 -0.1083 34 1 2.9883 4.9173 0.7777 35 1 1.3931 -1.6631 -1.2815 36 1 1.9551 -0.1531 -2.0381 37 1 2.9841 -2.8273 0.2041 38 1 3.4164 -2.8116 -2.2453 39 1 3.9750 -1.2719 -2.9420 40 1 5.9612 -1.4928 -1.5584 41 1 5.3984 -3.9282 -3.1208 42 1 5.9578 -2.3889 -3.8179 43 1 7.3178 -4.5269 -4.4804 44 1 8.7190 -3.4204 -4.3692 45 1 10.7699 -4.3643 -1.8391 46 1 9.6007 -3.2599 -1.0489 47 1 9.4192 -4.6671 0.8997 48 1 11.1557 -4.8459 0.4910 49 1 9.6296 -7.0598 0.7037 50 1 10.7865 -6.9292 -0.6581 51 1 7.7817 -6.6514 -0.6652 52 1 8.8662 -7.2427 -1.9564 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819204272.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:27 Heat of formation + Delta-G solvation = -138.719872 kcal Electronic energy + Delta-G solvation = -28802.823969 eV Core-core repulsion = 24802.072506 eV Total energy + Delta-G solvation = -4000.751463 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.14310 -38.18798 -36.97538 -36.03280 -35.31042 -34.58727 -32.46350 -31.30515 -29.45072 -29.05333 -27.34952 -27.05251 -26.05114 -24.34820 -23.09500 -22.19616 -21.46757 -20.90099 -20.55508 -20.00656 -17.61302 -16.97454 -16.50140 -16.42743 -15.97957 -15.61270 -15.42700 -15.14576 -14.79494 -14.62991 -14.48036 -14.21929 -14.11552 -13.65064 -13.36473 -13.27894 -13.15080 -12.85629 -12.51310 -12.33835 -12.10292 -11.94120 -11.82722 -11.69742 -11.48442 -11.43653 -11.39354 -11.36043 -11.07264 -10.91251 -10.90187 -10.68278 -10.61199 -10.42665 -10.34893 -9.83800 -9.74036 -9.47799 -9.10881 -8.43621 -8.39535 -7.17718 -6.00207 -4.00431 3.23322 3.36350 3.39644 3.43741 3.59429 3.74978 4.19300 4.23447 4.42602 4.45765 4.49206 4.69068 4.69809 4.82981 4.97102 4.98920 5.03297 5.11201 5.15958 5.19602 5.29378 5.32361 5.35183 5.39303 5.42786 5.48551 5.56855 5.58240 5.63816 5.67305 5.71630 5.72537 5.75787 5.76748 5.95191 6.03273 6.05821 6.10661 6.36361 6.51410 6.72983 6.85619 6.89620 7.27846 7.29207 7.32599 7.82903 8.10623 8.20394 8.31081 8.58417 9.06674 9.63422 11.10949 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.015967 B = 0.002166 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.164584 B =12924.700400 C =13601.332976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.531 5.531 3 C 0.193 3.807 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.902 5.902 8 Si 0.898 3.102 9 H -0.288 1.288 10 H -0.278 1.278 11 H -0.275 1.275 12 C 0.026 3.974 13 C 0.119 3.881 14 H 0.099 0.901 15 O -0.530 6.530 16 C 0.028 3.972 17 N -0.671 5.671 18 C 0.066 3.934 19 C 0.048 3.952 20 H 0.083 0.917 21 C 0.025 3.975 22 O -0.376 6.376 23 C 0.246 3.754 24 C -0.157 4.157 25 C -0.121 4.121 26 C -0.123 4.123 27 C -0.117 4.117 28 O -0.338 6.338 29 H 0.011 0.989 30 H 0.042 0.958 31 H 0.072 0.928 32 H -0.012 1.012 33 H 0.030 0.970 34 H 0.261 0.739 35 H 0.060 0.940 36 H 0.030 0.970 37 H 0.361 0.639 38 H 0.072 0.928 39 H 0.035 0.965 40 H 0.344 0.656 41 H 0.082 0.918 42 H 0.045 0.955 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.071 0.929 49 H 0.073 0.927 50 H 0.068 0.932 51 H 0.088 0.912 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.672 -19.640 -9.986 25.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.255 5.255 3 C 0.068 3.932 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.542 5.542 8 Si 0.726 3.274 9 H -0.214 1.214 10 H -0.203 1.203 11 H -0.201 1.201 12 C -0.104 4.104 13 C 0.059 3.941 14 H 0.117 0.883 15 O -0.332 6.332 16 C -0.102 4.102 17 N -0.302 5.302 18 C -0.064 4.064 19 C -0.010 4.010 20 H 0.101 0.899 21 C -0.052 4.052 22 O -0.297 6.297 23 C 0.169 3.831 24 C -0.195 4.195 25 C -0.159 4.159 26 C -0.160 4.160 27 C -0.154 4.154 28 O -0.258 6.258 29 H 0.029 0.971 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.006 0.994 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.206 0.794 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.163 0.837 41 H 0.101 0.899 42 H 0.063 0.937 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.094 0.906 48 H 0.089 0.911 49 H 0.091 0.909 50 H 0.087 0.913 51 H 0.107 0.893 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.075 -19.970 -8.950 25.492 hybrid contribution -0.679 1.617 -1.069 2.054 sum 12.396 -18.353 -10.019 24.308 Atomic orbital electron populations 1.22193 0.88839 0.98590 1.01113 1.62023 1.06513 1.17769 1.39209 1.19770 0.95387 0.81480 0.96522 1.21123 1.34597 0.96788 1.01677 0.91915 1.24986 0.95345 0.97368 0.96995 1.69946 1.38581 1.11493 1.34151 0.86552 0.78639 0.78257 0.83924 1.21410 1.20335 1.20077 1.22690 0.96127 0.98053 0.93529 1.21840 0.94963 0.92997 0.84321 0.88303 1.86686 1.74228 1.34158 1.38118 1.22730 0.89818 0.99549 0.98061 1.60243 1.02713 1.30078 1.37165 1.21973 0.92608 0.99367 0.92405 1.23831 0.97737 0.92829 0.86583 0.89938 1.23985 0.95163 0.89819 0.96281 1.88854 1.69270 1.52185 1.19386 1.23939 0.84958 0.93528 0.80707 1.23084 0.98489 1.00131 0.97747 1.22449 1.02027 0.94811 0.96599 1.22369 0.97763 0.97025 0.98852 1.22133 1.00494 0.93912 0.98869 1.89632 1.38484 1.47512 1.50150 0.97093 0.93899 0.90946 0.99437 0.95224 0.92956 0.92138 0.95223 0.79414 0.90939 0.94649 0.83740 0.89938 0.93683 0.89801 0.89809 0.89972 0.90432 0.90590 0.91051 0.90852 0.91282 0.89344 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 9.31 60.07 0.56 1.37 16 2 N -0.53 -11.60 4.59 -244.37 -1.12 -12.73 16 3 C 0.19 5.10 4.55 -4.98 -0.02 5.07 16 4 C -0.50 -14.44 8.58 -34.44 -0.30 -14.74 16 5 H 0.06 1.79 7.10 -52.49 -0.37 1.42 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 8 Si 0.90 22.05 29.54 -169.99 -5.02 17.02 16 9 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.03 0.45 4.65 -3.82 -0.02 0.43 16 13 C 0.12 1.95 3.25 -26.73 -0.09 1.87 16 14 H 0.10 1.91 6.73 -51.93 -0.35 1.56 16 15 O -0.53 -9.37 13.11 -35.23 -0.46 -9.83 16 16 C 0.03 0.36 5.35 -3.82 -0.02 0.33 16 17 N -0.67 -8.26 6.37 -113.79 -0.72 -8.98 16 18 C 0.07 0.65 5.31 -3.83 -0.02 0.63 16 19 C 0.05 0.47 3.20 -25.95 -0.08 0.39 16 20 H 0.08 0.76 7.51 -51.93 -0.39 0.37 16 21 C 0.02 0.21 7.67 37.95 0.29 0.50 16 22 O -0.38 -4.06 10.86 -59.23 -0.64 -4.70 16 23 C 0.25 2.58 1.41 -26.25 -0.04 2.54 16 24 C -0.16 -1.44 6.08 -25.31 -0.15 -1.59 16 25 C -0.12 -1.00 6.91 -24.63 -0.17 -1.17 16 26 C -0.12 -0.92 6.84 -24.95 -0.17 -1.10 16 27 C -0.12 -1.07 6.46 -25.84 -0.17 -1.24 16 28 O -0.34 -4.16 10.85 -59.23 -0.64 -4.80 16 29 H 0.01 0.21 8.08 -51.93 -0.42 -0.21 16 30 H 0.04 0.70 7.85 -51.93 -0.41 0.30 16 31 H 0.07 1.52 7.01 -51.93 -0.36 1.15 16 32 H -0.01 -0.34 8.07 -51.93 -0.42 -0.76 16 33 H 0.03 0.83 6.60 -51.93 -0.34 0.49 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.06 0.90 7.75 -51.93 -0.40 0.50 16 36 H 0.03 0.52 8.00 -51.93 -0.42 0.10 16 37 H 0.36 5.08 9.05 45.56 0.41 5.50 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.34 4.30 8.73 -39.29 -0.34 3.95 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.63 7.85 -51.93 -0.41 0.22 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 46 H 0.08 0.74 7.22 -51.93 -0.38 0.36 16 47 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.09 0.86 7.97 -51.93 -0.41 0.44 16 52 H 0.08 0.73 7.98 -51.93 -0.41 0.31 16 LS Contribution 408.14 15.07 6.15 6.15 Total: -1.00 -33.15 408.14 -11.01 -44.16 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -8.79 Total: 5.24 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -0.49 Total: -5.23 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -1.11 Total: -48.00 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -1.75 Total: -19.34 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.15 -11.01 -44.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819204272.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.564 kcal (2) G-P(sol) polarization free energy of solvation -33.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds