Wall clock time and date at job start Tue Mar 31 2020 05:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35911 * 117.00147 * 2 1 4 4 C 1.38728 * 119.95247 * 0.02562 * 3 2 1 5 5 C 1.38728 * 120.18729 * 180.02562 * 4 3 2 6 6 O 1.35908 * 119.95551 * 179.97438 * 5 4 3 7 7 C 1.42906 * 116.99998 * 0.02562 * 6 5 4 8 8 C 1.38513 * 120.09410 * 359.97438 * 5 4 3 9 9 C 1.39517 * 119.90520 * 0.02562 * 8 5 4 10 10 C 1.47869 * 120.09210 * 180.02562 * 9 8 5 11 11 O 1.21553 * 120.00090 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99621 * 179.97438 * 10 9 8 13 13 S 1.65602 * 119.99511 * 179.72146 * 12 10 9 14 14 O 1.42109 * 104.27511 * 181.34842 * 13 12 10 15 15 O 1.42098 * 104.28120 * 309.20840 * 13 12 10 16 16 C 1.81394 * 104.44973 * 65.28308 * 13 12 10 17 17 C 1.50697 * 109.47387 * 179.97438 * 16 13 12 18 18 H 1.07996 * 120.00269 * 359.97438 * 17 16 13 19 19 C 1.37880 * 119.99990 * 179.97438 * 17 16 13 20 20 N 1.31509 * 120.00199 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99823 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47041 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47065 * 120.00371 * 21 19 17 24 24 H 1.48497 * 109.47342 * 240.00263 * 21 19 17 25 25 C 1.38511 * 119.95246 * 180.25768 * 3 2 1 26 26 H 1.09003 * 109.46561 * 299.99669 * 1 2 3 27 27 H 1.09002 * 109.47487 * 59.98978 * 1 2 3 28 28 H 1.08997 * 109.47309 * 179.97438 * 1 2 3 29 29 H 1.07998 * 119.90977 * 359.97438 * 4 3 2 30 30 H 1.08996 * 109.47278 * 180.02562 * 7 6 5 31 31 H 1.08992 * 109.47135 * 300.00678 * 7 6 5 32 32 H 1.09003 * 109.46491 * 60.00552 * 7 6 5 33 33 H 1.07995 * 120.04781 * 179.97438 * 8 5 4 34 34 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 35 35 H 1.09009 * 109.47044 * 299.99503 * 16 13 12 36 36 H 1.09001 * 109.47747 * 59.99183 * 16 13 12 37 37 H 0.96996 * 120.00318 * 180.02562 * 20 19 17 38 38 H 1.07999 * 120.04809 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2895 2.3738 0.0005 5 6 1.9143 3.6124 0.0000 6 8 1.1686 4.7487 0.0000 7 6 -0.2519 4.5924 0.0011 8 6 3.2971 3.6928 -0.0005 9 6 4.0617 2.5259 -0.0011 10 6 5.5382 2.6069 -0.0011 11 8 6.0874 3.6913 -0.0011 12 7 6.2749 1.4783 -0.0011 13 16 7.9284 1.5690 -0.0081 14 8 8.3536 0.2134 -0.0386 15 8 8.2264 2.4546 -1.0787 16 6 8.3466 2.3314 1.5839 17 6 9.8430 2.4685 1.6976 18 1 10.4790 2.1304 0.8928 19 6 10.4003 3.0257 2.8290 20 7 9.6260 3.4370 3.8092 21 14 12.2553 3.1950 2.9702 22 1 12.8960 2.6604 1.7418 23 1 12.6108 4.6278 3.1300 24 1 12.7336 2.4317 4.1508 25 6 3.4293 1.2823 -0.0054 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 0.2111 2.3147 0.0005 30 1 -0.7255 5.5741 0.0006 31 1 -0.5575 4.0414 -0.8882 32 1 -0.5561 4.0424 0.8917 33 1 3.7827 4.6575 -0.0014 34 1 5.8367 0.6129 -0.0015 35 1 7.8853 3.3171 1.6470 36 1 7.9768 1.7046 2.3953 37 1 10.0180 3.8292 4.6050 38 1 4.0175 0.3765 -0.0100 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821582122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:20 Heat of formation + Delta-G solvation = -153.522259 kcal Electronic energy + Delta-G solvation = -25649.693285 eV Core-core repulsion = 21585.834867 eV Total energy + Delta-G solvation = -4063.858418 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.03178 -39.68837 -39.17735 -36.66744 -36.16732 -35.16329 -34.23899 -33.32813 -30.81106 -30.63637 -29.03305 -28.42696 -26.95273 -24.39118 -23.48788 -22.72407 -21.12950 -19.55960 -19.04425 -17.41249 -17.37063 -16.92367 -16.51795 -16.36584 -16.34204 -15.90697 -15.85728 -15.63908 -15.09732 -14.84185 -14.63914 -14.44026 -14.17084 -13.54842 -12.97235 -12.82038 -12.58427 -12.51244 -12.15080 -11.99085 -11.91833 -11.76034 -11.53135 -11.43117 -11.28183 -11.18169 -10.93402 -10.91114 -10.63504 -10.49426 -10.17723 -9.77224 -9.16417 -9.08100 -8.68845 -8.34325 -6.30348 -4.41456 0.47321 1.03469 1.14083 2.53644 2.75704 2.85916 3.21600 3.23390 3.30588 3.37172 3.54854 4.17290 4.27701 4.43933 4.56836 4.59861 4.67336 4.71439 4.74489 4.77299 4.82150 4.97600 5.03364 5.03840 5.08354 5.15442 5.23255 5.29810 5.79892 5.87463 6.01843 6.13740 6.60674 6.75441 6.79626 6.99370 7.09417 7.44791 7.68758 7.77090 8.59822 9.25806 10.81474 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.018446 B = 0.003066 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.592413 B = 9130.466522 C = 9786.449061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.310 6.310 3 C 0.158 3.842 4 C -0.273 4.273 5 C 0.159 3.841 6 O -0.308 6.308 7 C 0.026 3.974 8 C -0.122 4.122 9 C -0.056 4.056 10 C 0.582 3.418 11 O -0.473 6.473 12 N -1.055 6.055 13 S 2.553 3.447 14 O -0.966 6.966 15 O -0.950 6.950 16 C -0.404 4.404 17 C -0.534 4.534 18 H 0.072 0.928 19 C 0.077 3.923 20 N -0.876 5.876 21 Si 0.907 3.093 22 H -0.265 1.265 23 H -0.277 1.277 24 H -0.278 1.278 25 C -0.151 4.151 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.103 0.897 29 H 0.139 0.861 30 H 0.103 0.897 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.153 0.847 34 H 0.424 0.576 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.268 0.732 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.284 -3.725 -5.295 25.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.223 6.223 3 C 0.113 3.887 4 C -0.292 4.292 5 C 0.113 3.887 6 O -0.221 6.221 7 C -0.069 4.069 8 C -0.141 4.141 9 C -0.061 4.061 10 C 0.368 3.632 11 O -0.344 6.344 12 N -0.815 5.815 13 S 2.655 3.345 14 O -0.957 6.957 15 O -0.940 6.940 16 C -0.541 4.541 17 C -0.574 4.574 18 H 0.090 0.910 19 C -0.130 4.130 20 N -0.512 5.512 21 Si 0.733 3.267 22 H -0.190 1.190 23 H -0.203 1.203 24 H -0.203 1.203 25 C -0.170 4.170 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.121 0.879 29 H 0.157 0.843 30 H 0.121 0.879 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.170 0.830 34 H 0.260 0.740 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -23.248 -3.144 -5.892 24.189 hybrid contribution -0.241 -0.242 0.759 0.832 sum -23.490 -3.387 -5.133 24.281 Atomic orbital electron populations 1.23099 0.78203 1.04291 1.01312 1.86122 1.21523 1.26245 1.88419 1.18456 0.91596 0.83869 0.94812 1.21423 1.00748 0.91915 1.15129 1.18516 0.90793 0.84739 0.94681 1.86147 1.19014 1.28656 1.88292 1.23103 0.78387 1.04173 1.01252 1.20453 0.90065 0.99701 1.03915 1.19385 0.92552 0.92793 1.01383 1.17905 0.87237 0.83521 0.74575 1.91002 1.72683 1.26571 1.44193 1.55465 1.30625 1.14829 1.80587 1.07200 0.71235 0.75260 0.80765 1.93526 1.78000 1.35300 1.88871 1.93534 1.80525 1.66725 1.53250 1.27614 1.06713 1.08883 1.10886 1.20327 0.87186 1.44785 1.05068 0.91027 1.24925 0.99422 0.93771 0.94843 1.69963 1.35672 1.38798 1.06788 0.86274 0.83424 0.78279 0.78699 1.18951 1.20286 1.20344 1.20453 0.91728 0.97773 1.07071 0.92552 0.92614 0.87874 0.84347 0.87859 0.92627 0.92566 0.82975 0.74026 0.88234 0.89539 0.92200 0.84089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -2.92 10.49 -19.46 -0.20 -3.13 16 3 C 0.16 1.68 6.68 -39.30 -0.26 1.42 16 4 C -0.27 -2.60 8.02 -39.22 -0.31 -2.91 16 5 C 0.16 1.81 6.68 -39.30 -0.26 1.55 16 6 O -0.31 -3.21 10.49 -19.45 -0.20 -3.41 16 7 C 0.03 0.15 9.81 101.05 0.99 1.14 16 8 C -0.12 -1.66 9.53 -39.00 -0.37 -2.03 16 9 C -0.06 -0.79 5.87 -105.00 -0.62 -1.41 16 10 C 0.58 10.23 7.51 -12.32 -0.09 10.13 16 11 O -0.47 -10.08 14.45 -11.90 -0.17 -10.25 16 12 N -1.06 -17.77 5.55 30.53 0.17 -17.60 16 13 S 2.55 56.20 5.03 -107.50 -0.54 55.66 16 14 O -0.97 -22.23 18.08 -57.54 -1.04 -23.27 16 15 O -0.95 -23.89 17.03 -64.81 -1.10 -24.99 16 16 C -0.40 -10.16 5.65 36.00 0.20 -9.96 16 17 C -0.53 -15.08 9.13 -34.44 -0.31 -15.40 16 18 H 0.07 1.97 7.71 -52.49 -0.40 1.57 16 19 C 0.08 2.16 5.46 -17.82 -0.10 2.07 16 20 N -0.88 -25.25 13.29 55.43 0.74 -24.51 16 21 Si 0.91 21.32 29.54 -169.99 -5.02 16.30 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 C -0.15 -1.79 9.48 -39.00 -0.37 -2.16 16 26 H 0.06 0.24 7.65 -51.93 -0.40 -0.16 16 27 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 28 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.14 0.89 4.49 -52.49 -0.24 0.65 16 30 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 32 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 33 H 0.15 2.15 7.64 -52.49 -0.40 1.75 16 34 H 0.42 5.36 6.82 -34.47 -0.24 5.12 16 35 H 0.10 2.61 7.20 -51.92 -0.37 2.24 16 36 H 0.09 2.09 8.14 -51.92 -0.42 1.67 16 37 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.14 1.40 6.40 -52.49 -0.34 1.06 16 LS Contribution 342.50 15.07 5.16 5.16 Total: -1.00 -37.21 342.50 -6.71 -43.92 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -3.98 Total: 2.55 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: -0.52 Total: -16.42 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 0.91 Total: -42.11 kcal Atomic # 8 Polarization: -62.33 SS G_CDS: -2.72 Total: -65.05 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 56.20 SS G_CDS: -0.54 Total: 55.66 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -37.21 -6.71 -43.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821582122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.603 kcal (2) G-P(sol) polarization free energy of solvation -37.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds